Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46785 * 2 1 4 4 C 1.42898 * 113.99936 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.84710 * 18.80295 * 4 3 2 6 6 C 1.53952 * 113.74119 * 247.59705 * 4 3 2 7 7 C 1.53777 * 87.02228 * 220.05496 * 6 4 3 8 8 H 1.09005 * 113.61372 * 270.77801 * 7 6 4 9 9 N 1.46501 * 113.61589 * 139.95350 * 7 6 4 10 10 C 1.34774 * 119.99935 * 105.86790 * 9 7 6 11 11 O 1.21582 * 120.00028 * 354.91348 * 10 9 7 12 12 N 1.34774 * 119.99566 * 175.18976 * 10 9 7 13 13 C 1.46926 * 120.62880 * 184.46640 * 12 10 9 14 14 C 1.53621 * 108.54221 * 126.37043 * 13 12 10 15 15 C 1.53037 * 109.24304 * 54.85844 * 14 13 12 16 16 C 1.52997 * 109.46373 * 178.49060 * 15 14 13 17 17 C 1.50706 * 109.47037 * 295.07041 * 16 15 14 18 18 H 1.07995 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99832 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00177 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99847 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47148 * 89.99599 * 21 19 17 23 23 H 1.48504 * 109.46883 * 209.99914 * 21 19 17 24 24 H 1.48501 * 109.46976 * 329.99611 * 21 19 17 25 25 C 1.53039 * 109.53641 * 298.51337 * 15 14 13 26 26 C 1.46932 * 120.63301 * 4.74990 * 12 10 9 27 27 C 1.53778 * 113.61439 * 150.00178 * 4 3 2 28 28 H 1.08996 * 113.69323 * 25.50074 * 27 4 3 29 29 O 1.42903 * 113.61106 * 254.60877 * 27 4 3 30 30 C 1.42907 * 113.99577 * 112.50568 * 29 27 4 31 31 H 1.08997 * 109.47761 * 60.00083 * 1 2 3 32 32 H 1.09007 * 109.46975 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47296 * 299.99590 * 1 2 3 34 34 H 1.08999 * 109.46778 * 240.00441 * 2 1 3 35 35 H 1.08998 * 109.47020 * 119.99951 * 2 1 3 36 36 H 1.09003 * 113.66569 * 105.52733 * 6 4 3 37 37 H 1.08994 * 113.61830 * 334.57777 * 6 4 3 38 38 H 0.96999 * 119.99717 * 285.86134 * 9 7 6 39 39 H 1.09001 * 109.59000 * 246.20695 * 13 12 10 40 40 H 1.09002 * 109.58828 * 6.62827 * 13 12 10 41 41 H 1.09000 * 109.63857 * 294.86416 * 14 13 12 42 42 H 1.09001 * 109.45860 * 174.74166 * 14 13 12 43 43 H 1.09002 * 109.46120 * 58.52899 * 15 14 13 44 44 H 1.09004 * 109.47341 * 55.06851 * 16 15 14 45 45 H 1.09001 * 109.47295 * 175.06834 * 16 15 14 46 46 H 0.97002 * 119.99692 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.49629 * 301.40806 * 25 15 14 48 48 H 1.09000 * 109.49733 * 181.31881 * 25 15 14 49 49 H 1.08992 * 109.58400 * 353.37511 * 26 12 10 50 50 H 1.09002 * 109.58469 * 113.65286 * 26 12 10 51 51 H 1.08993 * 109.46898 * 60.00144 * 30 29 27 52 52 H 1.08996 * 109.46827 * 179.97438 * 30 29 27 53 53 H 1.09001 * 109.46802 * 299.99591 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9277 0.5458 -0.3247 6 6 4.0068 2.0444 1.3021 7 6 4.9913 2.8302 0.4201 8 1 5.9154 2.2915 0.2102 9 7 5.2240 4.2020 0.8787 10 6 6.3860 4.5231 1.4813 11 8 7.2027 3.6568 1.7275 12 7 6.6402 5.8037 1.8158 13 6 7.9405 6.1850 2.3836 14 6 8.5222 7.3329 1.5446 15 6 7.5060 8.4752 1.4793 16 6 8.0952 9.6365 0.6761 17 6 9.2854 10.2009 1.4084 18 1 9.5907 9.7742 2.3524 19 6 9.9839 11.2625 0.8737 20 7 9.6119 11.7824 -0.2757 21 14 11.4587 11.9625 1.7817 22 1 12.6895 11.2549 1.3465 23 1 11.5860 13.4104 1.4769 24 1 11.2727 11.7789 3.2435 25 6 6.2259 7.9833 0.8000 26 6 5.6200 6.8438 1.6253 27 6 3.9482 2.7254 -0.7051 28 1 3.2311 3.5463 -0.7136 29 8 4.5171 2.4723 -1.9913 30 6 3.7634 3.0152 -3.0773 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.4880 1.3023 1.9392 37 1 3.3050 2.6779 1.8444 38 1 4.5417 4.8792 0.7486 39 1 7.8070 6.5134 3.4144 40 1 8.6166 5.3305 2.3549 41 1 8.7358 6.9779 0.5363 42 1 9.4423 7.6905 2.0068 43 1 7.2742 8.8133 2.4893 44 1 8.4085 9.2781 -0.3045 45 1 7.3410 10.4141 0.5548 46 1 10.1035 12.5291 -0.6520 47 1 6.4610 7.6222 -0.2012 48 1 5.5113 8.8036 0.7328 49 1 4.7646 6.4241 1.0962 50 1 5.2993 7.2231 2.5956 51 1 3.6916 4.0970 -2.9646 52 1 4.2612 2.7806 -4.0181 53 1 2.7630 2.5826 -3.0773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575918724.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -127.480613 kcal Electronic energy + Delta-G solvation = -30434.685857 eV Core-core repulsion = 26306.195625 eV Total energy + Delta-G solvation = -4128.490233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.76403 -40.68737 -38.79433 -38.25170 -36.90756 -35.72833 -34.45664 -33.61284 -31.95427 -31.58618 -29.74466 -27.99997 -26.52157 -25.56403 -25.35127 -23.99842 -23.68136 -23.38052 -21.47735 -21.36592 -20.42077 -19.12596 -18.60308 -18.34596 -17.63514 -17.06278 -16.80372 -16.53604 -16.43099 -16.37910 -15.97742 -15.49916 -15.37260 -15.00578 -14.76618 -14.59641 -14.52880 -14.35714 -14.07897 -13.91638 -13.76452 -13.50800 -13.31488 -13.04307 -12.95936 -12.72360 -12.67411 -12.51712 -12.38672 -12.33056 -12.27261 -12.13202 -12.06599 -11.82393 -11.73942 -11.34553 -11.29580 -11.03208 -10.95619 -10.79469 -10.51282 -10.45482 -10.07758 -9.45035 -8.16093 -6.24812 1.41160 1.41750 1.52269 1.54059 2.09311 2.42928 2.46344 2.95408 2.99975 3.17656 3.35616 3.44289 3.73982 3.78533 3.92054 4.01326 4.08598 4.19021 4.21243 4.22017 4.31583 4.41321 4.43654 4.51427 4.52190 4.53059 4.54688 4.68114 4.73949 4.80506 4.82903 4.88147 4.89969 4.91270 4.98791 5.02744 5.05559 5.10747 5.29364 5.31716 5.34340 5.39799 5.45793 5.55797 5.61557 5.82563 5.91271 5.96637 6.07145 6.30100 6.31153 6.91670 6.92889 7.43610 7.51483 8.95550 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.002001 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.910603 B =13988.449624 C =14435.281005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.385 6.385 4 C 0.061 3.939 5 H 0.103 0.897 6 C -0.155 4.155 7 C 0.143 3.857 8 H 0.100 0.900 9 N -0.722 5.722 10 C 0.706 3.294 11 O -0.633 6.633 12 N -0.624 5.624 13 C 0.137 3.863 14 C -0.110 4.110 15 C -0.073 4.073 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.063 0.937 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.958 3.042 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.262 1.262 25 C -0.124 4.124 26 C 0.119 3.881 27 C 0.064 3.936 28 H 0.111 0.889 29 O -0.394 6.394 30 C 0.025 3.975 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.409 0.591 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.065 0.935 44 H -0.017 1.017 45 H -0.007 1.007 46 H 0.261 0.739 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.048 0.952 52 H 0.094 0.906 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.574 -22.657 0.524 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.305 6.305 4 C 0.002 3.998 5 H 0.121 0.879 6 C -0.194 4.194 7 C 0.037 3.963 8 H 0.118 0.882 9 N -0.379 5.379 10 C 0.407 3.593 11 O -0.514 6.514 12 N -0.360 5.360 13 C 0.014 3.986 14 C -0.148 4.148 15 C -0.091 4.091 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.081 0.919 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.186 1.186 25 C -0.162 4.162 26 C -0.004 4.004 27 C 0.005 3.995 28 H 0.129 0.871 29 O -0.313 6.313 30 C -0.071 4.071 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.248 0.752 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.001 0.999 45 H 0.011 0.989 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.117 0.883 50 H 0.107 0.893 51 H 0.067 0.933 52 H 0.113 0.887 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.909 -23.076 0.536 30.482 hybrid contribution 0.818 1.116 -0.216 1.400 sum -19.092 -21.960 0.320 29.100 Atomic orbital electron populations 1.21764 0.92826 1.03343 1.02739 1.22733 0.96330 0.82871 1.00872 1.87895 1.19891 1.28078 1.94593 1.23945 0.81689 0.98561 0.95630 0.87918 1.23696 0.98175 1.00418 0.97143 1.22241 0.98142 0.82260 0.93665 0.88170 1.45017 1.17533 1.12096 1.63289 1.15981 0.82371 0.82601 0.78313 1.90857 1.49502 1.48700 1.62374 1.47383 1.16539 1.05848 1.66267 1.21551 0.83348 0.97116 0.96626 1.21842 0.99118 0.94733 0.99141 1.21030 0.94316 0.94570 0.99230 1.19024 0.94499 0.92782 0.94143 1.21688 1.13262 1.15014 1.06633 0.91867 1.25928 1.00688 0.97515 0.95849 1.70098 1.41976 1.25630 1.19893 0.85553 0.79451 0.77305 0.79381 1.20302 1.21077 1.18567 1.21932 0.97473 0.98162 0.98649 1.21804 0.89705 0.87614 1.01239 1.24557 0.94375 0.98045 0.82554 0.87112 1.87943 1.50902 1.77745 1.14689 1.22981 0.96447 0.98140 0.89532 0.92257 0.89376 0.92184 0.92684 0.92490 0.89522 0.87912 0.75204 0.90236 0.90600 0.94368 0.91360 0.91694 0.99897 0.98892 0.93070 0.93279 0.89977 0.88259 0.89345 0.93286 0.88722 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 71.98 0.74 -0.59 16 2 C 0.05 0.55 6.50 71.98 0.47 1.01 16 3 O -0.39 -6.10 10.36 -148.98 -1.54 -7.64 16 4 C 0.06 0.95 4.14 31.18 0.13 1.08 16 5 H 0.10 1.52 7.87 -2.38 -0.02 1.50 16 6 C -0.16 -2.53 7.73 31.18 0.24 -2.29 16 7 C 0.14 2.98 4.01 45.52 0.18 3.16 16 8 H 0.10 2.63 7.57 -2.38 -0.02 2.61 16 9 N -0.72 -15.87 5.27 -455.30 -2.40 -18.27 16 10 C 0.71 21.21 8.30 179.06 1.49 22.69 16 11 O -0.63 -24.03 15.44 -3.98 -0.06 -24.09 16 12 N -0.62 -17.64 2.97 -836.09 -2.48 -20.12 16 13 C 0.14 4.27 6.45 86.51 0.56 4.83 16 14 C -0.11 -4.08 5.21 30.82 0.16 -3.92 16 15 C -0.07 -2.78 2.10 -10.77 -0.02 -2.80 16 16 C 0.03 1.66 4.45 29.85 0.13 1.79 16 17 C -0.53 -29.17 8.39 25.60 0.21 -28.96 16 18 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.94 -56.82 13.29 21.45 0.28 -56.54 16 21 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 C -0.12 -3.68 5.36 30.67 0.16 -3.52 16 26 C 0.12 2.65 6.43 86.36 0.56 3.20 16 27 C 0.06 1.11 3.89 31.12 0.12 1.23 16 28 H 0.11 1.63 7.84 -2.39 -0.02 1.61 16 29 O -0.39 -8.07 10.71 -148.98 -1.60 -9.67 16 30 C 0.02 0.37 10.85 113.37 1.23 1.60 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.41 6.68 6.17 -92.71 -0.57 6.11 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 2.56 7.03 -2.39 -0.02 2.54 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 2.72 6.91 -2.39 -0.02 2.70 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 45 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.10 1.56 5.56 -2.39 -0.01 1.55 16 50 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -73.05 419.29 1.36 -71.70 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.31 Total: 19.50 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 6.82 Total: -1.16 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -4.60 Total: -94.93 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -3.20 Total: -41.40 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -73.05 1.36 -71.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575918724.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.783 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds