Wall clock time and date at job start Sat Apr 11 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47146 * 2 1 4 4 C 1.42902 * 113.99964 * 182.42067 * 3 2 1 5 5 H 1.08999 * 109.47215 * 340.80127 * 4 3 2 6 6 C 1.50705 * 109.46952 * 220.80223 * 4 3 2 7 7 O 1.21274 * 120.00003 * 349.65577 * 6 4 3 8 8 N 1.34773 * 119.99398 * 169.66030 * 6 4 3 9 9 C 1.46492 * 120.00474 * 4.74510 * 8 6 4 10 10 C 1.50708 * 109.46901 * 268.48590 * 9 8 6 11 11 H 1.07994 * 119.99912 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99874 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00335 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99750 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47221 * 89.99829 * 14 12 10 16 16 H 1.48496 * 109.47139 * 209.99650 * 14 12 10 17 17 H 1.48496 * 109.46998 * 329.99892 * 14 12 10 18 18 C 1.46503 * 119.99487 * 184.73879 * 8 6 4 19 19 C 1.52995 * 109.47439 * 269.99879 * 18 8 6 20 20 N 1.46903 * 109.47420 * 179.97438 * 19 18 8 21 21 C 1.47006 * 110.99879 * 293.63868 * 20 19 18 22 22 C 1.53102 * 109.25783 * 177.60377 * 21 20 19 23 23 O 1.43019 * 109.25644 * 56.84603 * 22 21 20 24 24 C 1.43012 * 113.73926 * 301.33431 * 23 22 21 25 25 C 1.47012 * 110.99981 * 170.00369 * 20 19 18 26 26 C 1.52997 * 109.47072 * 100.80260 * 4 3 2 27 27 C 1.53007 * 117.49956 * 9.03432 * 26 4 3 28 28 C 1.52999 * 117.49908 * 300.37747 * 26 4 3 29 29 H 1.08995 * 109.47121 * 60.00166 * 1 2 3 30 30 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46677 * 299.99951 * 1 2 3 32 32 H 1.09000 * 109.47150 * 240.00090 * 2 1 3 33 33 H 1.09003 * 109.46911 * 120.00014 * 2 1 3 34 34 H 1.08996 * 109.47288 * 28.48497 * 9 8 6 35 35 H 1.08999 * 109.47787 * 148.49220 * 9 8 6 36 36 H 0.97001 * 120.00027 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.47301 * 30.00354 * 18 8 6 38 38 H 1.09004 * 109.46831 * 150.00303 * 18 8 6 39 39 H 1.08999 * 109.47262 * 300.00499 * 19 18 8 40 40 H 1.09004 * 109.46763 * 60.00382 * 19 18 8 41 41 H 1.08996 * 109.51444 * 297.53811 * 21 20 19 42 42 H 1.09001 * 109.50866 * 57.67489 * 21 20 19 43 43 H 1.09000 * 109.50795 * 296.91890 * 22 21 20 44 44 H 1.08995 * 109.54834 * 176.80577 * 22 21 20 45 45 H 1.09005 * 109.50570 * 298.73010 * 24 23 22 46 46 H 1.09000 * 109.53805 * 178.62821 * 24 23 22 47 47 H 1.09008 * 109.50495 * 302.32299 * 25 20 19 48 48 H 1.08990 * 109.50965 * 62.41853 * 25 20 19 49 49 H 1.08996 * 115.55214 * 154.70846 * 26 4 3 50 50 H 1.09005 * 117.49769 * 0.02562 * 27 26 4 51 51 H 1.08995 * 117.49545 * 145.01710 * 27 26 4 52 52 H 1.08997 * 117.49992 * 214.97693 * 28 26 4 53 53 H 1.09001 * 117.49880 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4298 1.4605 -0.0551 5 1 3.8815 0.5171 0.2518 6 6 3.8826 2.5592 0.8716 7 8 3.0676 3.3057 1.3709 8 7 5.1933 2.7123 1.1454 9 6 6.1864 1.8791 0.4630 10 6 6.4517 0.6418 1.2815 11 1 5.9321 0.4910 2.2161 12 6 7.3576 -0.2977 0.8369 13 7 7.9900 -0.1143 -0.3015 14 14 7.6858 -1.8317 1.8511 15 1 6.7467 -2.9065 1.4410 16 1 9.0827 -2.2833 1.6277 17 1 7.4889 -1.5249 3.2906 18 6 5.6250 3.7121 2.1254 19 6 5.8797 5.0440 1.4169 20 7 6.3119 6.0467 2.3997 21 6 5.2288 6.3611 3.3427 22 6 5.7393 7.3622 4.3825 23 8 6.2306 8.5272 3.7141 24 6 7.2869 8.2575 2.7884 25 6 6.7919 7.2656 1.7326 26 6 3.8602 1.7903 -1.4858 27 6 2.7612 2.1402 -2.4912 28 6 3.4837 0.7940 -2.5842 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8074 1.5917 -0.5177 35 1 7.1126 2.4414 0.3441 36 1 8.6271 -0.7755 -0.6144 37 1 4.8469 3.8434 2.8773 38 1 6.5430 3.3757 2.6074 39 1 6.6578 4.9127 0.6650 40 1 4.9617 5.3804 0.9349 41 1 4.3890 6.7958 2.8007 42 1 4.9062 5.4485 3.8439 43 1 6.5440 6.9080 4.9607 44 1 4.9245 7.6421 5.0501 45 1 8.1365 7.8293 3.3204 46 1 7.5914 9.1845 2.3026 47 1 7.6105 7.0131 1.0584 48 1 5.9774 7.7143 1.1642 49 1 4.8140 2.3088 -1.5821 50 1 1.7316 2.1359 -2.1332 51 1 2.9922 2.8888 -3.2491 52 1 4.1897 0.6574 -3.4033 53 1 2.9298 -0.0967 -2.2875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599230239.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:24 Heat of formation + Delta-G solvation = -104.524892 kcal Electronic energy + Delta-G solvation = -31779.446508 eV Core-core repulsion = 27651.951709 eV Total energy + Delta-G solvation = -4127.494798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42306 -40.53192 -39.27785 -37.43180 -36.96404 -36.30963 -34.53525 -32.50895 -32.21445 -31.40342 -29.16920 -28.89410 -26.76664 -25.10538 -24.94822 -24.01145 -23.37994 -22.96131 -21.98153 -21.41103 -20.29204 -18.70154 -18.08990 -17.99819 -17.56442 -17.32953 -17.14241 -16.65729 -16.33670 -16.17927 -16.00809 -15.95838 -15.86405 -15.55949 -15.00724 -14.79786 -14.37816 -14.28265 -14.21517 -13.78922 -13.66909 -13.44305 -13.32295 -13.10556 -13.06400 -12.85406 -12.66644 -12.55112 -12.50343 -12.35236 -12.25312 -12.12635 -12.10912 -11.79898 -11.73881 -11.53865 -11.48615 -11.15713 -10.75191 -10.72906 -10.56524 -10.23834 -9.62068 -9.44987 -8.19488 -6.32935 1.40541 1.43833 1.51773 1.61730 1.87681 2.40576 2.62197 2.87775 2.95837 3.03676 3.11827 3.56643 3.73503 3.79595 3.88985 3.96120 3.97344 4.07464 4.14075 4.15978 4.18692 4.25754 4.28838 4.36112 4.36588 4.40984 4.43077 4.55189 4.57332 4.68880 4.73979 4.78609 4.79195 4.82861 4.84512 4.89346 4.93438 4.97109 5.00025 5.03400 5.16206 5.25072 5.27812 5.32173 5.60281 5.73035 5.86431 5.89340 6.05928 6.13865 6.14167 6.50532 6.78878 7.23977 7.39353 8.86015 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008246 B = 0.003893 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.719282 B = 7190.801783 C = 9157.882914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 O -0.373 6.373 4 C 0.118 3.882 5 H 0.088 0.912 6 C 0.514 3.486 7 O -0.581 6.581 8 N -0.592 5.592 9 C 0.239 3.761 10 C -0.549 4.549 11 H 0.049 0.951 12 C 0.030 3.970 13 N -0.912 5.912 14 Si 0.949 3.051 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.274 1.274 18 C 0.130 3.870 19 C 0.061 3.939 20 N -0.537 5.537 21 C 0.015 3.985 22 C 0.069 3.931 23 O -0.403 6.403 24 C 0.066 3.934 25 C 0.016 3.984 26 C -0.191 4.191 27 C -0.153 4.153 28 C -0.158 4.158 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.021 0.979 36 H 0.268 0.732 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.019 0.981 41 H 0.029 0.971 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.115 0.885 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.097 0.903 48 H 0.034 0.966 49 H 0.107 0.893 50 H 0.100 0.900 51 H 0.104 0.896 52 H 0.106 0.894 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 6.828 -0.147 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 O -0.292 6.292 4 C 0.057 3.943 5 H 0.106 0.894 6 C 0.303 3.697 7 O -0.462 6.462 8 N -0.324 5.324 9 C 0.119 3.881 10 C -0.587 4.587 11 H 0.067 0.933 12 C -0.171 4.171 13 N -0.551 5.551 14 Si 0.775 3.225 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.199 1.199 18 C 0.006 3.994 19 C -0.068 4.068 20 N -0.262 5.262 21 C -0.113 4.113 22 C -0.008 4.008 23 O -0.321 6.321 24 C -0.011 4.011 25 C -0.112 4.112 26 C -0.210 4.210 27 C -0.190 4.190 28 C -0.194 4.194 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.133 0.867 45 H 0.084 0.916 46 H 0.138 0.862 47 H 0.115 0.885 48 H 0.052 0.948 49 H 0.125 0.875 50 H 0.118 0.882 51 H 0.123 0.877 52 H 0.124 0.876 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.715 7.275 0.299 9.256 hybrid contribution 0.166 -1.163 -0.046 1.176 sum -5.549 6.112 0.253 8.259 Atomic orbital electron populations 1.21718 0.91644 1.03588 1.02837 1.22945 0.97187 0.82834 1.00643 1.87937 1.18684 1.27877 1.94667 1.21104 0.82581 0.97381 0.93275 0.89447 1.20730 0.82214 0.85126 0.81667 1.90566 1.53730 1.47026 1.54847 1.48119 1.06101 1.36626 1.41518 1.19474 0.86624 0.88661 0.93374 1.21607 1.24535 1.05510 1.07072 0.93301 1.25519 0.95115 1.00620 0.95874 1.69986 1.27348 1.36664 1.21115 0.85693 0.77644 0.80032 0.79171 1.19771 1.20632 1.19926 1.21209 1.00278 0.87101 0.90783 1.22225 0.98547 0.91786 0.94235 1.62174 1.35508 1.10615 1.17948 1.22863 0.92443 1.00368 0.95626 1.22740 0.99858 0.84996 0.93201 1.87938 1.54087 1.32382 1.57739 1.22794 0.89387 0.99248 0.89624 1.22887 1.00543 0.90269 0.97514 1.22628 1.00679 1.07839 0.89819 1.22950 0.97332 0.98688 0.99983 1.23059 1.03170 0.93647 0.99547 0.91469 0.88601 0.92758 0.91855 0.93926 0.92882 0.96067 0.92293 0.91691 0.89981 0.90538 0.96231 0.95294 0.89768 0.91521 0.86676 0.91634 0.86157 0.88508 0.94786 0.87534 0.88167 0.87724 0.87575 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.04 1.14 6.29 71.98 0.45 1.60 16 3 O -0.37 -13.66 7.90 -130.15 -1.03 -14.68 16 4 C 0.12 4.61 2.19 29.85 0.07 4.68 16 5 H 0.09 3.66 7.01 -2.39 -0.02 3.65 16 6 C 0.51 22.64 7.03 87.66 0.62 23.25 16 7 O -0.58 -28.09 16.16 15.82 0.26 -27.84 16 8 N -0.59 -25.33 2.46 -826.17 -2.03 -27.36 16 9 C 0.24 11.11 4.66 85.64 0.40 11.51 16 10 C -0.55 -27.82 8.93 25.60 0.23 -27.59 16 11 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 12 C 0.03 1.52 5.46 84.65 0.46 1.98 16 13 N -0.91 -48.22 13.29 21.45 0.28 -47.93 16 14 Si 0.95 40.64 29.54 68.60 2.03 42.67 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 C 0.13 4.98 5.32 86.38 0.46 5.44 16 19 C 0.06 2.08 5.28 86.30 0.46 2.53 16 20 N -0.54 -15.64 4.73 -895.24 -4.23 -19.87 16 21 C 0.02 0.42 5.44 86.32 0.47 0.89 16 22 C 0.07 1.55 7.01 72.02 0.50 2.05 16 23 O -0.40 -9.85 10.83 -148.98 -1.61 -11.46 16 24 C 0.07 1.36 7.01 72.01 0.50 1.86 16 25 C 0.02 0.38 5.64 86.31 0.49 0.87 16 26 C -0.19 -6.68 4.57 -10.79 -0.05 -6.73 16 27 C -0.15 -4.39 9.88 30.62 0.30 -4.09 16 28 C -0.16 -4.49 10.07 30.62 0.31 -4.18 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.06 1.63 5.85 -2.39 -0.01 1.61 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.05 2.50 4.24 -2.39 -0.01 2.49 16 35 H 0.02 1.05 8.08 -2.39 -0.02 1.03 16 36 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.06 2.55 5.87 -2.39 -0.01 2.54 16 38 H 0.08 3.22 8.07 -2.38 -0.02 3.20 16 39 H 0.08 2.60 8.04 -2.39 -0.02 2.58 16 40 H 0.02 0.73 8.12 -2.38 -0.02 0.71 16 41 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 2.40 6.38 -2.39 -0.02 2.39 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.10 2.12 8.09 -2.38 -0.02 2.10 16 48 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.11 4.03 6.19 -2.39 -0.01 4.02 16 50 H 0.10 2.96 7.07 -2.38 -0.02 2.94 16 51 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 52 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 53 H 0.10 2.65 5.88 -2.39 -0.01 2.64 16 Total: -1.00 -62.22 413.96 0.95 -61.27 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.88 Total: 33.50 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.41 Total: 11.70 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -5.97 Total: -95.15 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -2.39 Total: -53.98 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -62.22 0.95 -61.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599230239.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.256 kcal (2) G-P(sol) polarization free energy of solvation -62.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds