Wall clock time and date at job start Sat Apr 11 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42906 * 109.46641 * 2 1 4 4 C 1.42898 * 113.99509 * 184.35084 * 3 2 1 5 5 H 1.08991 * 109.47383 * 22.03439 * 4 3 2 6 6 C 1.50699 * 109.46852 * 142.03514 * 4 3 2 7 7 O 1.21284 * 120.00189 * 17.46938 * 6 4 3 8 8 N 1.34778 * 119.99905 * 197.74531 * 6 4 3 9 9 C 1.46497 * 120.00105 * 355.03580 * 8 6 4 10 10 C 1.50704 * 109.47034 * 95.02811 * 9 8 6 11 11 H 1.07998 * 119.99815 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99948 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99924 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00185 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.46902 * 90.00201 * 14 12 10 16 16 H 1.48492 * 109.47186 * 210.00346 * 14 12 10 17 17 H 1.48501 * 109.46889 * 330.00513 * 14 12 10 18 18 C 1.46506 * 119.99792 * 175.03125 * 8 6 4 19 19 C 1.53000 * 109.46935 * 90.00503 * 18 8 6 20 20 N 1.46901 * 109.47285 * 180.02562 * 19 18 8 21 21 C 1.47013 * 110.99632 * 293.63243 * 20 19 18 22 22 C 1.53095 * 109.25760 * 177.60503 * 21 20 19 23 23 O 1.43022 * 109.25740 * 56.85418 * 22 21 20 24 24 C 1.43019 * 113.73277 * 301.32871 * 23 22 21 25 25 C 1.47016 * 111.00081 * 169.99931 * 20 19 18 26 26 C 1.52998 * 109.47157 * 262.03346 * 4 3 2 27 27 C 1.53000 * 117.49910 * 13.93945 * 26 4 3 28 28 C 1.53007 * 117.50000 * 305.28025 * 26 4 3 29 29 H 1.09003 * 109.47423 * 299.99999 * 1 2 3 30 30 H 1.09002 * 109.46949 * 60.00448 * 1 2 3 31 31 H 1.09005 * 109.46757 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47269 * 239.99926 * 2 1 3 33 33 H 1.09002 * 109.46949 * 119.99552 * 2 1 3 34 34 H 1.08997 * 109.47036 * 215.02869 * 9 8 6 35 35 H 1.08996 * 109.46849 * 335.03239 * 9 8 6 36 36 H 0.97003 * 120.00064 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.46744 * 209.99862 * 18 8 6 38 38 H 1.08992 * 109.47377 * 330.00463 * 18 8 6 39 39 H 1.09001 * 109.47090 * 299.99985 * 19 18 8 40 40 H 1.09002 * 109.47218 * 59.99299 * 19 18 8 41 41 H 1.09003 * 109.50824 * 297.54244 * 21 20 19 42 42 H 1.08997 * 109.50910 * 57.67382 * 21 20 19 43 43 H 1.08999 * 109.51023 * 296.91612 * 22 21 20 44 44 H 1.09004 * 109.54288 * 176.80148 * 22 21 20 45 45 H 1.09004 * 109.50457 * 298.73464 * 24 23 22 46 46 H 1.09004 * 109.53953 * 178.62952 * 24 23 22 47 47 H 1.08991 * 109.50449 * 302.32673 * 25 20 19 48 48 H 1.09002 * 109.50195 * 62.41481 * 25 20 19 49 49 H 1.08997 * 115.55094 * 159.61267 * 26 4 3 50 50 H 1.08999 * 117.49775 * 0.02562 * 27 26 4 51 51 H 1.09003 * 117.49621 * 145.02028 * 27 26 4 52 52 H 1.08995 * 117.50038 * 214.98374 * 28 26 4 53 53 H 1.09005 * 117.49339 * 0.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4273 1.4615 -0.0990 5 1 3.8352 0.5511 -0.5380 6 6 3.7770 2.6399 -0.9708 7 8 2.9459 3.4932 -1.1991 8 7 5.0116 2.7427 -1.5015 9 6 6.0459 1.7685 -1.1443 10 6 6.0840 0.6740 -2.1795 11 1 5.4059 0.7015 -3.0197 12 6 6.9852 -0.3619 -2.0546 13 7 7.8112 -0.3952 -1.0317 14 14 7.0320 -1.7191 -3.3374 15 1 7.9851 -1.3493 -4.4146 16 1 7.4716 -2.9867 -2.7011 17 1 5.6765 -1.8999 -3.9163 18 6 5.3194 3.8286 -2.4356 19 6 5.8317 5.0416 -1.6564 20 7 6.1397 6.1307 -2.5929 21 6 7.2731 5.7757 -3.4593 22 6 7.5212 6.9105 -4.4565 23 8 7.7480 8.1271 -3.7397 24 6 6.6636 8.5032 -2.8864 25 6 6.4068 7.3846 -1.8733 26 6 4.0210 1.6653 1.2962 27 6 3.1151 1.3861 2.4972 28 6 3.4796 2.8272 2.1316 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 7.0151 2.2656 -1.1052 35 1 5.8184 1.3384 -0.1690 36 1 8.4450 -1.1242 -0.9436 37 1 6.0849 3.4979 -3.1375 38 1 4.4180 4.1029 -2.9835 39 1 5.0662 5.3722 -0.9544 40 1 6.7331 4.7672 -1.1084 41 1 8.1642 5.6255 -2.8497 42 1 7.0435 4.8584 -4.0015 43 1 6.6502 7.0250 -5.1017 44 1 8.3959 6.6775 -5.0638 45 1 5.7676 8.6641 -3.4860 46 1 6.9175 9.4220 -2.3576 47 1 5.5448 7.6417 -1.2579 48 1 7.2836 7.2598 -1.2379 49 1 5.0790 1.4233 1.3969 50 1 2.0963 1.0568 2.2933 51 1 3.5773 0.9607 3.3880 52 1 4.1813 3.3493 2.7820 53 1 2.7000 3.4461 1.6873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599230240.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:29 Heat of formation + Delta-G solvation = -108.116668 kcal Electronic energy + Delta-G solvation = -31788.440416 eV Core-core repulsion = 27660.789867 eV Total energy + Delta-G solvation = -4127.650549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.40403 -40.52796 -39.20155 -37.38118 -36.99439 -36.35752 -34.55764 -32.45472 -32.19950 -31.39440 -29.18926 -28.87021 -26.79718 -25.05966 -24.97854 -23.92789 -23.46521 -23.07510 -21.93831 -21.38246 -20.11649 -18.65300 -18.19095 -17.85294 -17.68207 -17.45762 -17.11234 -16.61185 -16.34988 -16.24885 -15.99131 -15.94546 -15.82263 -15.48696 -15.00290 -14.83304 -14.50990 -14.33326 -14.11806 -13.67520 -13.54453 -13.40135 -13.26144 -13.18110 -13.11464 -12.88942 -12.66215 -12.54119 -12.39968 -12.33478 -12.22761 -12.16285 -12.07389 -11.89930 -11.75111 -11.55199 -11.47816 -11.28494 -10.75070 -10.72506 -10.62871 -10.24591 -9.61238 -9.42840 -8.22880 -6.37464 1.39588 1.42543 1.50886 1.63648 1.89127 2.38415 2.67678 2.78661 2.92574 3.06978 3.07787 3.65044 3.73800 3.82704 3.90920 3.92335 3.97060 4.06076 4.15231 4.17533 4.23798 4.26259 4.30765 4.36870 4.42307 4.43139 4.48379 4.51979 4.56891 4.69842 4.75435 4.75544 4.79024 4.80751 4.83987 4.90219 4.93401 4.95528 4.99532 5.03052 5.11452 5.24076 5.27683 5.31289 5.60947 5.71973 5.85752 5.90026 6.01813 6.14637 6.16092 6.51351 6.76487 7.25342 7.37142 8.82548 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008107 B = 0.004034 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.793462 B = 6939.235452 C = 9189.734734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 O -0.375 6.375 4 C 0.114 3.886 5 H 0.086 0.914 6 C 0.519 3.481 7 O -0.576 6.576 8 N -0.593 5.593 9 C 0.247 3.753 10 C -0.550 4.550 11 H 0.051 0.949 12 C 0.028 3.972 13 N -0.915 5.915 14 Si 0.952 3.048 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.272 1.272 18 C 0.131 3.869 19 C 0.063 3.937 20 N -0.539 5.539 21 C 0.011 3.989 22 C 0.068 3.932 23 O -0.402 6.402 24 C 0.067 3.933 25 C 0.017 3.983 26 C -0.191 4.191 27 C -0.143 4.143 28 C -0.166 4.166 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.017 0.983 35 H 0.045 0.955 36 H 0.269 0.731 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.034 0.966 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.064 0.936 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.036 0.964 49 H 0.113 0.887 50 H 0.103 0.897 51 H 0.115 0.885 52 H 0.105 0.895 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 7.314 2.044 9.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 O -0.293 6.293 4 C 0.052 3.948 5 H 0.104 0.896 6 C 0.307 3.693 7 O -0.457 6.457 8 N -0.325 5.325 9 C 0.126 3.874 10 C -0.589 4.589 11 H 0.069 0.931 12 C -0.173 4.173 13 N -0.554 5.554 14 Si 0.777 3.223 15 H -0.200 1.200 16 H -0.204 1.204 17 H -0.196 1.196 18 C 0.008 3.992 19 C -0.066 4.066 20 N -0.265 5.265 21 C -0.117 4.117 22 C -0.008 4.008 23 O -0.321 6.321 24 C -0.010 4.010 25 C -0.111 4.111 26 C -0.210 4.210 27 C -0.180 4.180 28 C -0.203 4.203 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.138 0.862 47 H 0.111 0.889 48 H 0.055 0.945 49 H 0.131 0.869 50 H 0.121 0.879 51 H 0.133 0.867 52 H 0.124 0.876 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.494 7.986 1.700 9.841 hybrid contribution 1.112 -1.483 -0.157 1.860 sum -4.382 6.503 1.543 7.992 Atomic orbital electron populations 1.21727 0.91791 1.03559 1.02769 1.22882 0.96987 0.82700 1.00811 1.87919 1.19029 1.28074 1.94315 1.21169 0.82639 0.96835 0.94124 0.89572 1.20635 0.81636 0.87000 0.79993 1.90579 1.49565 1.43111 1.62433 1.48080 1.11391 1.28681 1.44332 1.19291 0.85481 0.86084 0.96529 1.21644 1.19570 1.08000 1.09671 0.93069 1.25565 0.94614 0.99813 0.97280 1.69994 1.21534 1.33476 1.30384 0.85650 0.78499 0.78807 0.79344 1.20044 1.20442 1.19632 1.21179 1.00778 0.85844 0.91420 1.22195 0.99023 0.91162 0.94259 1.62161 1.39052 1.03315 1.21924 1.22921 0.91753 1.00420 0.96581 1.22742 1.02959 0.82329 0.92817 1.87944 1.42666 1.41476 1.60022 1.22780 0.90264 0.96594 0.91362 1.22865 1.01127 0.90311 0.96833 1.22656 0.99697 1.07637 0.90970 1.23011 1.00233 0.97872 0.96843 1.22852 1.03192 0.91622 1.02596 0.91461 0.92928 0.88582 0.93948 0.91655 0.96521 0.93717 0.92230 0.90477 0.91318 0.91532 0.95386 0.94768 0.89373 0.91671 0.86632 0.91806 0.86173 0.88943 0.94535 0.86922 0.87911 0.86716 0.87624 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 10.28 71.98 0.74 -2.44 16 2 C 0.04 1.22 5.85 71.98 0.42 1.64 16 3 O -0.37 -13.73 8.29 -130.55 -1.08 -14.81 16 4 C 0.11 4.43 2.14 29.85 0.06 4.50 16 5 H 0.09 3.62 6.69 -2.39 -0.02 3.61 16 6 C 0.52 22.69 6.74 87.66 0.59 23.28 16 7 O -0.58 -27.67 16.22 15.39 0.25 -27.42 16 8 N -0.59 -25.42 2.46 -826.16 -2.03 -27.45 16 9 C 0.25 11.53 4.78 85.63 0.41 11.94 16 10 C -0.55 -27.90 9.06 25.60 0.23 -27.67 16 11 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 12 C 0.03 1.44 5.46 84.65 0.46 1.90 16 13 N -0.92 -48.56 13.29 21.45 0.28 -48.27 16 14 Si 0.95 40.54 29.54 68.60 2.03 42.57 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 16 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 C 0.13 5.06 5.33 86.38 0.46 5.52 16 19 C 0.06 2.14 5.28 86.30 0.46 2.59 16 20 N -0.54 -15.75 4.73 -895.23 -4.23 -19.98 16 21 C 0.01 0.31 5.44 86.31 0.47 0.78 16 22 C 0.07 1.54 7.01 72.01 0.50 2.04 16 23 O -0.40 -9.87 10.83 -148.98 -1.61 -11.48 16 24 C 0.07 1.38 7.01 72.01 0.50 1.88 16 25 C 0.02 0.41 5.64 86.31 0.49 0.89 16 26 C -0.19 -6.51 5.14 -10.79 -0.06 -6.57 16 27 C -0.14 -3.87 9.59 30.62 0.29 -3.57 16 28 C -0.17 -5.05 9.88 30.62 0.30 -4.75 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.04 1.27 8.01 -2.39 -0.02 1.25 16 33 H 0.07 1.66 7.27 -2.39 -0.02 1.65 16 34 H 0.02 0.83 8.11 -2.39 -0.02 0.81 16 35 H 0.05 2.12 4.45 -2.39 -0.01 2.11 16 36 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.08 2.96 6.45 -2.39 -0.02 2.94 16 38 H 0.07 2.79 7.49 -2.39 -0.02 2.77 16 39 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 40 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 2.44 6.38 -2.39 -0.02 2.42 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 48 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.11 4.09 6.42 -2.39 -0.02 4.07 16 50 H 0.10 2.73 6.06 -2.39 -0.01 2.71 16 51 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 52 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 53 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -62.12 416.69 0.82 -61.30 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.88 Total: 33.56 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.34 Total: 11.97 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -5.98 Total: -95.70 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -2.45 Total: -53.70 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -62.12 0.82 -61.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599230240.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.818 kcal (2) G-P(sol) polarization free energy of solvation -62.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds