Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46911 * 2 1 4 4 C 1.34779 * 120.00223 * 80.46475 * 3 2 1 5 5 O 1.21509 * 120.00010 * 179.97438 * 4 3 2 6 6 O 1.34634 * 119.99663 * 359.72949 * 4 3 2 7 7 C 1.45201 * 117.00044 * 180.27494 * 6 4 3 8 8 C 1.52997 * 109.47315 * 59.99691 * 7 6 4 9 9 C 1.53002 * 109.47014 * 179.97438 * 7 6 4 10 10 C 1.52998 * 109.46750 * 299.99458 * 7 6 4 11 11 C 1.46503 * 120.00066 * 260.46841 * 3 2 1 12 12 H 1.08998 * 109.47271 * 173.83560 * 11 3 2 13 13 C 1.53001 * 109.46953 * 293.83543 * 11 3 2 14 14 C 1.50703 * 109.47152 * 53.83878 * 11 3 2 15 15 O 1.21278 * 119.99731 * 315.75772 * 14 11 3 16 16 N 1.34769 * 119.99968 * 135.76600 * 14 11 3 17 17 C 1.46500 * 119.99784 * 185.26671 * 16 14 11 18 18 C 1.53009 * 109.47273 * 184.90793 * 17 16 14 19 19 C 1.50703 * 115.54508 * 65.35482 * 18 17 16 20 20 H 1.08001 * 119.99854 * 268.61723 * 19 18 17 21 21 C 1.37870 * 119.99716 * 88.62236 * 19 18 17 22 22 N 1.31513 * 120.00301 * 3.11746 * 21 19 18 23 23 Si 1.86803 * 119.99883 * 183.11836 * 21 19 18 24 24 H 1.48497 * 109.47263 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47026 * 120.00035 * 23 21 19 26 26 H 1.48504 * 109.47090 * 239.99850 * 23 21 19 27 27 C 1.52998 * 117.49613 * 279.69076 * 18 17 16 28 28 C 1.52993 * 117.50183 * 211.02974 * 18 17 16 29 29 H 1.09005 * 109.46647 * 305.48948 * 1 2 3 30 30 H 1.08996 * 109.47446 * 65.49428 * 1 2 3 31 31 H 1.09003 * 109.46800 * 185.49871 * 1 2 3 32 32 H 1.09003 * 109.46983 * 240.00409 * 2 1 3 33 33 H 1.08998 * 109.47603 * 119.99795 * 2 1 3 34 34 H 1.08994 * 109.47132 * 59.99819 * 8 7 6 35 35 H 1.09001 * 109.47052 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.46646 * 300.00255 * 8 7 6 37 37 H 1.09007 * 109.47257 * 60.00044 * 9 7 6 38 38 H 1.09001 * 109.46937 * 179.97438 * 9 7 6 39 39 H 1.08993 * 109.47319 * 299.99488 * 9 7 6 40 40 H 1.08997 * 109.47306 * 60.00185 * 10 7 6 41 41 H 1.09001 * 109.47090 * 180.02562 * 10 7 6 42 42 H 1.09007 * 109.47534 * 299.99964 * 10 7 6 43 43 H 1.09000 * 109.46691 * 177.56281 * 13 11 3 44 44 H 1.09000 * 109.47263 * 297.56554 * 13 11 3 45 45 H 1.09002 * 109.46808 * 57.57047 * 13 11 3 46 46 H 0.97003 * 120.00342 * 5.26719 * 16 14 11 47 47 H 1.08998 * 109.47194 * 304.90967 * 17 16 14 48 48 H 1.09001 * 109.47402 * 64.90973 * 17 16 14 49 49 H 0.96999 * 120.00127 * 185.00703 * 22 21 19 50 50 H 1.08994 * 117.50268 * 359.97438 * 27 18 17 51 51 H 1.09003 * 117.49756 * 145.02393 * 27 18 17 52 52 H 1.09004 * 117.49871 * 214.98265 * 28 18 17 53 53 H 1.09011 * 117.49831 * 359.97136 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0607 2.0811 1.1511 5 8 2.4661 3.2265 1.1511 6 8 1.6491 1.5126 2.3000 7 6 1.7170 2.3273 3.5000 8 6 0.8450 3.5717 3.3216 9 6 1.2109 1.5176 4.6955 10 6 3.1662 2.7511 3.7472 11 6 2.4606 2.0018 -1.2512 12 1 2.6828 3.0545 -1.0760 13 6 3.7186 1.2921 -1.7557 14 6 1.3690 1.8840 -2.2836 15 8 0.7737 0.8362 -2.4198 16 7 1.0546 2.9430 -3.0557 17 6 -0.0811 2.8656 -3.9778 18 6 -0.1457 4.1442 -4.8158 19 6 1.0120 4.3647 -5.7551 20 1 1.8741 4.9264 -5.4270 21 6 0.9704 3.8496 -7.0333 22 7 -0.1043 3.2186 -7.4534 23 14 2.4407 4.0477 -8.1684 24 1 3.5155 4.7895 -7.4614 25 1 2.9434 2.7081 -8.5657 26 1 2.0323 4.8026 -9.3803 27 6 -0.7784 5.3795 -4.1721 28 6 -1.5261 4.6212 -5.2717 29 1 -0.3633 0.5967 0.8368 30 1 -0.3634 0.4262 -0.9350 31 1 -0.3633 -1.0230 0.0985 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 -0.1873 3.2698 3.1454 35 1 0.8964 4.1835 4.2222 36 1 1.2052 4.1486 2.4697 37 1 1.8319 0.6308 4.8228 38 1 1.2624 2.1291 5.5963 39 1 0.1785 1.2160 4.5192 40 1 3.5264 3.3281 2.8954 41 1 3.2173 3.3624 4.6482 42 1 3.7875 1.8645 3.8743 43 1 4.0227 1.7254 -2.7085 44 1 4.5211 1.4143 -1.0283 45 1 3.5081 0.2311 -1.8898 46 1 1.5803 3.7564 -3.0008 47 1 0.0431 2.0057 -4.6359 48 1 -1.0045 2.7572 -3.4088 49 1 -0.1073 2.7934 -8.3252 50 1 -1.1491 5.2814 -3.1518 51 1 -0.3577 6.3519 -4.4284 52 1 -1.5969 5.0948 -6.2509 53 1 -2.3883 4.0238 -4.9749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861498172.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -110.423223 kcal Electronic energy + Delta-G solvation = -31875.866415 eV Core-core repulsion = 27748.115846 eV Total energy + Delta-G solvation = -4127.750569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11536 -40.88390 -38.89852 -38.21372 -36.89084 -35.08358 -34.94413 -33.94910 -33.09552 -30.57183 -28.37295 -28.32604 -28.25941 -27.26992 -25.33923 -24.67472 -23.08433 -22.75014 -21.35903 -20.94272 -20.18423 -19.00462 -18.53052 -17.81589 -17.63623 -17.23429 -16.81614 -16.66918 -16.37964 -15.95069 -15.74223 -15.34637 -15.30641 -14.95879 -14.66533 -14.51031 -14.27110 -14.11386 -13.72378 -13.52419 -13.38795 -13.29039 -13.17516 -13.06216 -12.94356 -12.90165 -12.84701 -12.83370 -12.82140 -12.48910 -12.37684 -12.33491 -12.22930 -12.04117 -11.78718 -11.39753 -11.35033 -11.06504 -10.97882 -10.93079 -10.40951 -10.11654 -9.87001 -9.73165 -8.09956 -6.23205 0.89593 1.41164 1.45199 1.54216 1.65392 1.73719 2.32969 2.43693 2.80319 3.18645 3.47623 3.75380 3.79055 3.83340 3.90452 3.98462 4.05946 4.09028 4.24155 4.42124 4.50437 4.53566 4.54641 4.61777 4.64136 4.65108 4.68497 4.70494 4.79837 4.80931 4.87032 4.91461 4.92651 4.95058 4.97957 5.01731 5.13349 5.16480 5.28584 5.31464 5.32993 5.38743 5.43101 5.48503 5.58115 5.63695 5.72087 5.77929 6.25366 6.36748 6.69423 6.84425 7.22106 7.29831 7.46551 8.97562 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002832 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.672637 B = 9885.830252 C =10132.348389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.580 5.580 4 C 0.653 3.347 5 O -0.587 6.587 6 O -0.359 6.359 7 C 0.122 3.878 8 C -0.181 4.181 9 C -0.134 4.134 10 C -0.178 4.178 11 C 0.144 3.856 12 H 0.119 0.881 13 C -0.148 4.148 14 C 0.495 3.505 15 O -0.560 6.560 16 N -0.696 5.696 17 C 0.183 3.817 18 C 0.003 3.997 19 C -0.502 4.502 20 H 0.062 0.938 21 C 0.025 3.975 22 N -0.907 5.907 23 Si 0.947 3.053 24 H -0.262 1.262 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.182 4.182 28 C -0.149 4.149 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.408 0.592 47 H 0.034 0.966 48 H 0.036 0.964 49 H 0.258 0.742 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.064 0.936 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -4.206 22.997 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.320 5.320 4 C 0.409 3.591 5 O -0.478 6.478 6 O -0.274 6.274 7 C 0.086 3.914 8 C -0.238 4.238 9 C -0.191 4.191 10 C -0.235 4.235 11 C 0.038 3.962 12 H 0.137 0.863 13 C -0.206 4.206 14 C 0.280 3.720 15 O -0.439 6.439 16 N -0.345 5.345 17 C 0.059 3.941 18 C 0.002 3.998 19 C -0.539 4.539 20 H 0.080 0.920 21 C -0.176 4.176 22 N -0.545 5.545 23 Si 0.773 3.227 24 H -0.186 1.186 25 H -0.212 1.212 26 H -0.213 1.213 27 C -0.219 4.219 28 C -0.187 4.187 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.244 0.756 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.067 0.933 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.083 0.917 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.390 -4.622 22.814 23.894 hybrid contribution 0.432 0.446 -1.346 1.483 sum 5.821 -4.176 21.468 22.632 Atomic orbital electron populations 1.22251 0.96140 1.02502 1.01545 1.21540 0.94656 0.80195 1.03461 1.46707 1.66472 1.15002 1.03836 1.18069 0.76718 0.82779 0.81575 1.90879 1.52974 1.17689 1.86287 1.86352 1.78895 1.46288 1.15816 1.22453 0.97022 0.90747 0.81179 1.22480 0.99278 0.97754 1.04301 1.21869 1.02017 1.00708 0.94499 1.22457 0.94496 1.02612 1.03910 1.20900 0.92855 1.01107 0.81366 0.86299 1.22040 0.94573 1.01320 1.02670 1.21152 0.84546 0.83619 0.82645 1.90583 1.54633 1.28792 1.69896 1.45912 1.32444 1.16495 1.39686 1.20569 0.86257 0.98124 0.89191 1.19096 0.93729 0.90165 0.96762 1.20687 1.02314 1.34798 0.96126 0.91992 1.25670 0.97684 0.95179 0.99024 1.70125 1.28310 1.35855 1.20170 0.85676 0.80419 0.77578 0.78991 1.18570 1.21194 1.21255 1.23019 1.05710 0.97011 0.96210 1.22352 0.95355 1.03847 0.97184 0.93828 0.92684 0.90581 0.89339 0.89200 0.92595 0.88898 0.92119 0.90936 0.87899 0.91595 0.91906 0.89087 0.91706 0.89973 0.89522 0.91234 0.75625 0.94795 0.94621 0.93269 0.89603 0.89880 0.91711 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 9.78 71.98 0.70 -3.77 16 2 C 0.12 3.02 5.01 86.38 0.43 3.46 16 3 N -0.58 -15.68 2.39 -932.23 -2.22 -17.91 16 4 C 0.65 18.26 7.54 129.79 0.98 19.24 16 5 O -0.59 -18.34 11.22 19.81 0.22 -18.12 16 6 O -0.36 -8.66 8.60 -55.44 -0.48 -9.14 16 7 C 0.12 2.30 1.13 -10.79 -0.01 2.29 16 8 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 9 C -0.13 -1.63 8.85 71.98 0.64 -1.00 16 10 C -0.18 -3.13 8.37 71.98 0.60 -2.52 16 11 C 0.14 4.00 3.04 44.25 0.13 4.14 16 12 H 0.12 3.30 6.81 -2.39 -0.02 3.29 16 13 C -0.15 -3.36 9.28 71.98 0.67 -2.69 16 14 C 0.50 17.23 6.80 87.66 0.60 17.82 16 15 O -0.56 -22.02 11.83 -3.02 -0.04 -22.05 16 16 N -0.70 -25.88 5.46 -463.06 -2.53 -28.41 16 17 C 0.18 8.09 5.53 86.38 0.48 8.57 16 18 C 0.00 0.15 1.50 -52.93 -0.08 0.07 16 19 C -0.50 -25.49 8.74 25.60 0.22 -25.26 16 20 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 21 C 0.02 1.32 5.42 84.65 0.46 1.77 16 22 N -0.91 -50.79 12.42 21.44 0.27 -50.53 16 23 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 27 C -0.18 -7.37 9.96 30.62 0.30 -7.06 16 28 C -0.15 -6.86 8.99 30.62 0.28 -6.59 16 29 H 0.04 1.17 7.77 -2.38 -0.02 1.15 16 30 H 0.05 1.87 5.30 -2.39 -0.01 1.86 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.25 5.98 -2.39 -0.01 2.23 16 33 H 0.09 1.83 7.70 -2.39 -0.02 1.82 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 37 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 1.58 6.94 -2.39 -0.02 1.57 16 46 H 0.41 13.96 8.38 -92.71 -0.78 13.19 16 47 H 0.03 1.75 8.10 -2.39 -0.02 1.73 16 48 H 0.04 1.56 8.09 -2.39 -0.02 1.54 16 49 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 50 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 51 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 52 H 0.06 3.27 8.03 -2.39 -0.02 3.25 16 53 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 Total: -1.00 -62.95 417.94 4.37 -58.58 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.11 Total: 38.04 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 7.01 Total: 5.47 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -4.49 Total: -96.84 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.29 Total: -49.31 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -62.95 4.37 -58.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861498172.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.843 kcal (2) G-P(sol) polarization free energy of solvation -62.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds