Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46831 * 2 1 4 4 C 1.37091 * 120.00028 * 264.77694 * 3 2 1 5 5 H 1.07994 * 120.00534 * 138.88646 * 4 3 2 6 6 C 1.38952 * 119.99874 * 318.87852 * 4 3 2 7 7 N 1.31413 * 120.00019 * 341.81062 * 6 4 3 8 8 Si 1.86800 * 119.99967 * 161.81169 * 6 4 3 9 9 H 1.48501 * 109.47317 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47237 * 120.00185 * 8 6 4 11 11 H 1.48507 * 109.46931 * 240.00205 * 8 6 4 12 12 C 1.34780 * 119.99664 * 84.77664 * 3 2 1 13 13 O 1.21293 * 119.99492 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00400 * 359.97438 * 12 3 2 15 15 C 1.53000 * 109.47132 * 180.02562 * 14 12 3 16 16 N 1.46503 * 109.46706 * 180.02562 * 15 14 12 17 17 C 1.46499 * 119.99854 * 269.99368 * 16 15 14 18 18 C 1.52999 * 109.46712 * 90.00888 * 17 16 15 19 19 C 1.53004 * 117.49391 * 243.61941 * 18 17 16 20 20 C 1.52998 * 117.49749 * 175.00038 * 18 17 16 21 21 C 1.34771 * 119.99748 * 90.00420 * 16 15 14 22 22 O 1.21510 * 120.00623 * 359.97438 * 21 16 15 23 23 O 1.34640 * 119.99952 * 179.97438 * 21 16 15 24 24 C 1.45200 * 117.00295 * 179.97438 * 23 21 16 25 25 C 1.53002 * 109.47241 * 59.99740 * 24 23 21 26 26 C 1.53008 * 109.47031 * 179.97438 * 24 23 21 27 27 C 1.52992 * 109.47088 * 299.99639 * 24 23 21 28 28 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46937 * 299.99982 * 1 2 3 30 30 H 1.08999 * 109.46788 * 60.00370 * 1 2 3 31 31 H 1.08991 * 109.47323 * 239.99894 * 2 1 3 32 32 H 1.08999 * 109.46788 * 119.99630 * 2 1 3 33 33 H 0.97002 * 119.99564 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47046 * 60.00280 * 14 12 3 35 35 H 1.09003 * 109.47100 * 300.00020 * 14 12 3 36 36 H 1.08998 * 109.47076 * 60.00114 * 15 14 12 37 37 H 1.09003 * 109.46994 * 299.99900 * 15 14 12 38 38 H 1.09003 * 109.46900 * 210.00302 * 17 16 15 39 39 H 1.08995 * 109.47333 * 330.00351 * 17 16 15 40 40 H 1.08994 * 115.55322 * 29.32611 * 18 17 16 41 41 H 1.08998 * 117.49851 * 0.02562 * 19 18 17 42 42 H 1.09009 * 117.49516 * 145.01947 * 19 18 17 43 43 H 1.09007 * 117.49795 * 214.97238 * 20 18 17 44 44 H 1.09001 * 117.50011 * 359.97438 * 20 18 17 45 45 H 1.09008 * 109.46796 * 60.00075 * 25 24 23 46 46 H 1.09000 * 109.47166 * 179.97438 * 25 24 23 47 47 H 1.08998 * 109.47262 * 300.00405 * 25 24 23 48 48 H 1.08998 * 109.46590 * 60.00274 * 26 24 23 49 49 H 1.09000 * 109.46587 * 180.02562 * 26 24 23 50 50 H 1.08998 * 109.47174 * 299.99712 * 26 24 23 51 51 H 1.09001 * 109.47339 * 59.99816 * 27 24 23 52 52 H 1.09000 * 109.47221 * 179.97438 * 27 24 23 53 53 H 1.09005 * 109.47437 * 300.00146 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3487 1.9915 -1.1823 5 1 2.0746 3.0220 -1.3532 6 6 3.0364 1.2842 -2.1608 7 7 3.6784 0.1817 -1.8457 8 14 3.0484 1.9004 -3.9242 9 1 2.2561 3.1531 -4.0162 10 1 4.4471 2.1667 -4.3460 11 1 2.4509 0.8711 -4.8123 12 6 2.1427 2.0520 1.1624 13 8 2.5465 3.1957 1.1623 14 6 1.7790 1.3814 2.4620 15 6 2.0101 2.3543 3.6201 16 7 1.6571 1.7020 4.8835 17 6 0.2893 1.7967 5.3996 18 6 -0.5408 0.6298 4.8610 19 6 -1.7227 0.9652 3.9491 20 6 -1.9728 0.4830 5.3794 21 6 2.5907 1.0151 5.5711 22 8 3.7252 0.9363 5.1430 23 8 2.2665 0.4161 6.7325 24 6 3.3223 -0.3068 7.4187 25 6 4.4628 0.6555 7.7568 26 6 2.7689 -0.9145 8.7093 27 6 3.8480 -1.4226 6.5136 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.1582 -0.3123 -2.5289 34 1 2.4005 0.4968 2.6008 35 1 0.7295 1.0881 2.4383 36 1 1.3884 3.2387 3.4812 37 1 3.0595 2.6479 3.6440 38 1 0.3083 1.7569 6.4887 39 1 -0.1560 2.7382 5.0781 40 1 0.0143 -0.2842 4.6503 41 1 -1.9086 2.0172 3.7326 42 1 -1.9453 0.2718 3.1380 43 1 -2.3599 -0.5277 5.5094 44 1 -2.3234 1.2175 6.1045 45 1 4.0882 1.4505 8.4018 46 1 5.2552 0.1129 8.2724 47 1 4.8571 1.0888 6.8377 48 1 1.9563 -1.5999 8.4686 49 1 3.5617 -1.4567 9.2246 50 1 2.3947 -0.1193 9.3540 51 1 4.2424 -0.9894 5.5943 52 1 4.6409 -1.9650 7.0285 53 1 3.0355 -2.1082 6.2726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864997976.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -108.630227 kcal Electronic energy + Delta-G solvation = -32011.464536 eV Core-core repulsion = 27883.791717 eV Total energy + Delta-G solvation = -4127.672819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93374 -40.53186 -39.15387 -37.98182 -36.96306 -36.16447 -34.94680 -34.08557 -32.13106 -31.13835 -28.35053 -28.30427 -28.12738 -27.22225 -25.39442 -23.91431 -23.15334 -22.52953 -21.82125 -20.53153 -20.32119 -19.00519 -18.70570 -18.06593 -17.43068 -17.28454 -16.96733 -16.47429 -16.17962 -16.01922 -15.78912 -15.47090 -15.16005 -15.04126 -14.63448 -14.52866 -14.24066 -14.18532 -13.68253 -13.65817 -13.54884 -13.33609 -13.21319 -13.06017 -12.87055 -12.85210 -12.82507 -12.67063 -12.53637 -12.45070 -12.33546 -12.27483 -12.24610 -12.12720 -12.03152 -11.75219 -11.35760 -11.31595 -11.04796 -10.90463 -10.76854 -10.41938 -9.84611 -9.40460 -8.33597 -6.10894 1.08594 1.36364 1.40485 1.54810 1.75341 2.04610 2.29929 2.74608 2.98154 3.01398 3.15716 3.78363 3.82039 3.83996 3.93239 3.98172 4.00600 4.03045 4.10444 4.20992 4.28442 4.37178 4.49334 4.51387 4.56616 4.62464 4.62758 4.69589 4.78302 4.78756 4.81590 4.84822 4.86653 4.89901 4.91658 4.98095 5.04934 5.12513 5.15402 5.28362 5.28870 5.30855 5.34550 5.36074 5.45854 5.46999 5.52529 5.54100 6.23963 6.31668 6.54555 7.17958 7.29817 7.46198 8.06976 8.70429 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.003223 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.706542 B = 8686.395852 C = 9724.261261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.104 3.896 3 N -0.453 5.453 4 C -0.341 4.341 5 H 0.065 0.935 6 C 0.001 3.999 7 N -0.895 5.895 8 Si 0.983 3.017 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.454 3.546 13 O -0.626 6.626 14 C -0.125 4.125 15 C 0.164 3.836 16 N -0.586 5.586 17 C 0.143 3.857 18 C -0.181 4.181 19 C -0.185 4.185 20 C -0.152 4.152 21 C 0.646 3.354 22 O -0.596 6.596 23 O -0.355 6.355 24 C 0.124 3.876 25 C -0.180 4.180 26 C -0.130 4.130 27 C -0.181 4.181 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.272 0.728 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.073 0.927 51 H 0.052 0.948 52 H 0.090 0.910 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 -5.718 20.663 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 N -0.172 5.172 4 C -0.469 4.469 5 H 0.083 0.917 6 C -0.201 4.201 7 N -0.533 5.533 8 Si 0.807 3.193 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.188 1.188 12 C 0.243 3.757 13 O -0.513 6.513 14 C -0.166 4.166 15 C 0.041 3.959 16 N -0.325 5.325 17 C 0.022 3.978 18 C -0.201 4.201 19 C -0.222 4.222 20 C -0.189 4.189 21 C 0.401 3.599 22 O -0.487 6.487 23 O -0.270 6.270 24 C 0.088 3.912 25 C -0.238 4.238 26 C -0.187 4.187 27 C -0.239 4.239 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.119 0.881 50 H 0.092 0.908 51 H 0.071 0.929 52 H 0.109 0.891 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.902 -5.398 20.506 23.403 hybrid contribution 0.752 0.121 -1.387 1.583 sum -9.150 -5.277 19.119 21.843 Atomic orbital electron populations 1.22083 0.94701 1.02447 1.01642 1.21506 0.94401 0.83607 1.02433 1.43731 1.56072 1.12824 1.04606 1.19424 1.36460 0.98221 0.92776 0.91721 1.26220 0.93109 0.96600 1.04181 1.70030 1.29659 1.18396 1.35205 0.85042 0.77993 0.78778 0.77510 1.19167 1.20711 1.18794 1.21050 0.80954 0.87468 0.86203 1.90473 1.52181 1.20794 1.87840 1.21783 1.03725 0.99276 0.91828 1.20935 1.01706 0.93878 0.79371 1.46899 1.10363 1.53038 1.22201 1.21411 0.78600 0.98154 0.99672 1.22649 0.91103 0.99998 1.06311 1.23137 1.01969 1.02614 0.94433 1.22990 0.95851 1.03401 0.96686 1.18239 0.83630 0.77840 0.80143 1.90933 1.21150 1.65312 1.71295 1.86317 1.43309 1.64215 1.33133 1.22409 0.85732 0.90659 0.92441 1.22477 0.98678 1.00038 1.02570 1.21847 1.02798 1.01354 0.92739 1.22473 1.02358 0.98139 1.00883 0.89939 0.92301 0.93595 0.90433 0.92790 0.91862 0.91225 0.87306 0.88259 0.92278 0.88178 0.88464 0.89401 0.88241 0.89017 0.88111 0.87106 0.91556 0.89137 0.92784 0.91052 0.88126 0.90793 0.92926 0.89118 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 10.15 71.98 0.73 -4.42 16 2 C 0.10 4.61 5.41 86.38 0.47 5.08 16 3 N -0.45 -23.91 2.50 -635.53 -1.59 -25.50 16 4 C -0.34 -19.77 8.84 84.04 0.74 -19.03 16 5 H 0.06 3.96 7.82 -2.91 -0.02 3.94 16 6 C 0.00 0.06 4.95 84.93 0.42 0.48 16 7 N -0.90 -50.38 11.61 21.66 0.25 -50.12 16 8 Si 0.98 43.38 29.59 68.60 2.03 45.41 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 12 C 0.45 23.17 7.59 87.66 0.67 23.84 16 13 O -0.63 -36.55 15.89 -3.07 -0.05 -36.60 16 14 C -0.12 -4.85 4.63 29.85 0.14 -4.71 16 15 C 0.16 5.78 4.74 86.38 0.41 6.19 16 16 N -0.59 -16.85 2.47 -952.18 -2.35 -19.20 16 17 C 0.14 2.89 5.74 86.38 0.50 3.39 16 18 C -0.18 -3.48 5.46 -10.79 -0.06 -3.54 16 19 C -0.18 -3.23 10.10 30.60 0.31 -2.92 16 20 C -0.15 -2.13 10.25 30.59 0.31 -1.82 16 21 C 0.65 20.57 7.70 129.79 1.00 21.57 16 22 O -0.60 -23.40 11.46 19.81 0.23 -23.18 16 23 O -0.36 -9.12 8.71 -55.49 -0.48 -9.61 16 24 C 0.12 2.65 1.13 -10.79 -0.01 2.64 16 25 C -0.18 -3.95 8.37 71.98 0.60 -3.35 16 26 C -0.13 -1.71 8.85 71.98 0.64 -1.08 16 27 C -0.18 -4.20 8.37 71.98 0.60 -3.60 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 1.82 6.60 -2.39 -0.02 1.80 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 3.84 5.76 -2.39 -0.01 3.83 16 32 H 0.05 2.26 6.66 -2.39 -0.02 2.25 16 33 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.07 2.89 7.41 -2.39 -0.02 2.87 16 35 H 0.11 3.58 5.90 -2.39 -0.01 3.57 16 36 H 0.10 3.25 7.85 -2.39 -0.02 3.23 16 37 H 0.06 2.50 7.38 -2.39 -0.02 2.48 16 38 H 0.10 1.77 7.37 -2.39 -0.02 1.75 16 39 H 0.10 1.69 7.63 -2.39 -0.02 1.67 16 40 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.10 1.68 8.03 -2.39 -0.02 1.66 16 42 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.05 1.61 5.88 -2.39 -0.01 1.59 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.05 1.65 5.88 -2.39 -0.01 1.64 16 52 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -74.99 420.17 6.37 -68.62 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.88 Total: 31.45 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 7.46 Total: 18.73 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -3.69 Total: -94.82 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: -0.31 Total: -69.38 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.99 6.37 -68.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864997976.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.013 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds