Wall clock time and date at job start Sat Apr 11 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46991 * 2 1 4 4 C 1.37089 * 120.00224 * 264.24878 * 3 2 1 5 5 H 1.07996 * 120.00264 * 191.55118 * 4 3 2 6 6 C 1.38951 * 120.00155 * 11.55275 * 4 3 2 7 7 N 1.31420 * 120.00033 * 22.57131 * 6 4 3 8 8 Si 1.86796 * 120.00356 * 202.57365 * 6 4 3 9 9 H 1.48498 * 109.47367 * 94.97535 * 8 6 4 10 10 H 1.48503 * 109.47221 * 214.97890 * 8 6 4 11 11 H 1.48508 * 109.47114 * 334.97815 * 8 6 4 12 12 C 1.34775 * 119.99580 * 84.25329 * 3 2 1 13 13 O 1.21294 * 119.99746 * 180.02562 * 12 3 2 14 14 C 1.50702 * 120.00175 * 359.97438 * 12 3 2 15 15 H 1.09003 * 112.85041 * 302.23683 * 14 12 3 16 16 C 1.53779 * 113.61142 * 73.55152 * 14 12 3 17 17 C 1.53782 * 87.08015 * 139.98075 * 16 14 12 18 18 H 1.09000 * 113.68669 * 220.00583 * 17 16 14 19 19 N 1.46495 * 113.61519 * 89.11526 * 17 16 14 20 20 C 1.34780 * 120.00310 * 107.50379 * 19 17 16 21 21 O 1.21511 * 119.99735 * 359.97438 * 20 19 17 22 22 O 1.34635 * 120.00118 * 179.97438 * 20 19 17 23 23 C 1.45202 * 116.99571 * 179.97438 * 22 20 19 24 24 C 1.53007 * 109.47228 * 60.00098 * 23 22 20 25 25 C 1.53005 * 109.46730 * 179.97438 * 23 22 20 26 26 C 1.52997 * 109.47456 * 299.99613 * 23 22 20 27 27 C 1.53779 * 87.07984 * 334.56225 * 17 16 14 28 28 C 1.53001 * 113.61063 * 139.98549 * 27 17 16 29 29 C 1.52997 * 113.61496 * 270.79903 * 27 17 16 30 30 H 1.08996 * 109.46851 * 299.99257 * 1 2 3 31 31 H 1.08994 * 109.47588 * 59.99619 * 1 2 3 32 32 H 1.09009 * 109.46904 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47105 * 240.00127 * 2 1 3 34 34 H 1.08994 * 109.47588 * 120.00381 * 2 1 3 35 35 H 0.96995 * 120.00150 * 180.02562 * 7 6 4 36 36 H 1.09000 * 113.61948 * 25.42505 * 16 14 12 37 37 H 1.09009 * 113.60943 * 254.52597 * 16 14 12 38 38 H 0.96998 * 119.99879 * 287.49837 * 19 17 16 39 39 H 1.08996 * 109.46819 * 59.99753 * 24 23 22 40 40 H 1.09003 * 109.46844 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.46724 * 299.99777 * 24 23 22 42 42 H 1.08998 * 109.47395 * 59.99986 * 25 23 22 43 43 H 1.08997 * 109.46945 * 180.02562 * 25 23 22 44 44 H 1.09004 * 109.47268 * 300.00102 * 25 23 22 45 45 H 1.09005 * 109.46668 * 60.00619 * 26 23 22 46 46 H 1.08997 * 109.46957 * 179.97438 * 26 23 22 47 47 H 1.08996 * 109.47249 * 300.00716 * 26 23 22 48 48 H 1.08997 * 109.47298 * 79.50341 * 28 27 17 49 49 H 1.09000 * 109.47185 * 199.50447 * 28 27 17 50 50 H 1.09004 * 109.47055 * 319.50213 * 28 27 17 51 51 H 1.09004 * 109.47086 * 63.39335 * 29 27 17 52 52 H 1.08999 * 109.47216 * 183.38651 * 29 27 17 53 53 H 1.08996 * 109.47570 * 303.39588 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3589 1.9879 -1.1812 5 1 2.8900 2.9282 -1.1719 6 6 2.0209 1.3930 -2.3906 7 7 1.0315 0.5297 -2.4443 8 14 2.9728 1.8202 -3.9400 9 1 4.0478 0.8181 -4.1527 10 1 2.0516 1.8128 -5.1048 11 1 3.5758 3.1695 -3.7943 12 6 2.1327 2.0555 1.1614 13 8 2.5365 3.1992 1.1614 14 6 1.7578 1.3888 2.4598 15 1 0.7261 1.0372 2.4727 16 6 2.7756 0.3352 2.9276 17 6 2.5553 0.8695 4.3527 18 1 3.4695 0.9328 4.9429 19 7 1.4624 0.2043 5.0664 20 6 1.7360 -0.6540 6.0689 21 8 2.8892 -0.8764 6.3805 22 8 0.7315 -1.2648 6.7251 23 6 1.1004 -2.1768 7.7931 24 6 1.8885 -1.4176 8.8626 25 6 -0.1646 -2.7695 8.4171 26 6 1.9658 -3.3036 7.2255 27 6 2.1466 2.2030 3.7051 28 6 0.9578 2.8787 4.3914 29 6 3.3201 3.1572 3.4740 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.7958 0.1141 -3.2885 36 1 3.7838 0.5037 2.5491 37 1 2.4363 -0.6914 2.7889 38 1 0.5418 0.3817 4.8175 39 1 1.2719 -0.6149 9.2669 40 1 2.1650 -2.1022 9.6645 41 1 2.7896 -0.9950 8.4183 42 1 -0.7264 -3.3102 7.6555 43 1 0.1122 -3.4538 9.2191 44 1 -0.7809 -1.9665 8.8216 45 1 2.8671 -2.8809 6.7813 46 1 2.2431 -3.9878 8.0274 47 1 1.4045 -3.8443 6.4637 48 1 1.3002 3.3904 5.2908 49 1 0.5082 3.6018 3.7108 50 1 0.2179 2.1252 4.6615 51 1 4.0187 2.7094 2.7671 52 1 2.9485 4.0990 3.0704 53 1 3.8292 3.3427 4.4198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874179437.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:30 Heat of formation + Delta-G solvation = -99.078029 kcal Electronic energy + Delta-G solvation = -32143.382892 eV Core-core repulsion = 28016.124287 eV Total energy + Delta-G solvation = -4127.258604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31013 -41.38896 -39.40129 -37.86718 -36.86006 -35.30634 -34.07398 -33.74139 -31.55839 -31.16538 -28.40871 -28.30352 -28.23587 -27.84509 -26.06419 -24.37554 -23.60994 -22.97820 -21.41530 -20.94151 -19.39414 -18.99033 -18.68623 -17.86369 -17.41895 -17.17109 -16.59125 -16.29657 -16.13107 -15.78031 -15.60859 -15.38292 -15.03345 -14.74102 -14.59515 -14.47752 -14.15025 -14.11012 -13.65479 -13.42253 -13.26624 -13.17953 -13.09041 -13.02935 -12.86900 -12.84350 -12.80823 -12.68239 -12.60339 -12.55288 -12.30061 -12.23846 -12.15558 -12.03087 -11.94891 -11.56085 -11.33717 -11.24762 -11.15567 -11.05535 -10.78611 -10.12895 -9.88941 -9.57596 -8.25270 -5.78988 1.14469 1.36707 1.43231 1.53652 1.77546 2.11243 2.31013 3.09688 3.11572 3.17358 3.33815 3.54387 3.80741 3.81086 3.86110 3.86717 4.00499 4.25071 4.29252 4.43199 4.48417 4.54894 4.64003 4.67242 4.69756 4.79387 4.82530 4.84085 4.85181 4.89958 4.91323 4.93621 4.94785 4.98704 5.06857 5.10663 5.15731 5.20269 5.21016 5.33848 5.34446 5.41749 5.46618 5.48876 5.52046 5.62404 5.67347 6.00094 6.16699 6.43063 6.63057 7.28389 7.37297 7.62547 8.19761 8.70980 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018363 B = 0.002834 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.413678 B = 9877.350894 C =10636.307986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 N -0.456 5.456 4 C -0.342 4.342 5 H 0.070 0.930 6 C 0.002 3.998 7 N -0.873 5.873 8 Si 0.976 3.024 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.280 1.280 12 C 0.447 3.553 13 O -0.621 6.621 14 C -0.113 4.113 15 H 0.113 0.887 16 C -0.132 4.132 17 C 0.162 3.838 18 H 0.105 0.895 19 N -0.680 5.680 20 C 0.652 3.348 21 O -0.589 6.589 22 O -0.368 6.368 23 C 0.124 3.876 24 C -0.179 4.179 25 C -0.136 4.136 26 C -0.181 4.181 27 C -0.059 4.059 28 C -0.130 4.130 29 C -0.098 4.098 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.270 0.730 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.049 0.951 50 H 0.070 0.930 51 H 0.036 0.964 52 H 0.054 0.946 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -8.744 20.152 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.004 3.996 3 N -0.174 5.174 4 C -0.469 4.469 5 H 0.088 0.912 6 C -0.201 4.201 7 N -0.512 5.512 8 Si 0.801 3.199 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.237 3.763 13 O -0.508 6.508 14 C -0.134 4.134 15 H 0.131 0.869 16 C -0.171 4.171 17 C 0.057 3.943 18 H 0.123 0.877 19 N -0.339 5.339 20 C 0.405 3.595 21 O -0.480 6.480 22 O -0.283 6.283 23 C 0.088 3.912 24 C -0.237 4.237 25 C -0.193 4.193 26 C -0.238 4.238 27 C -0.061 4.061 28 C -0.187 4.187 29 C -0.155 4.155 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.253 0.747 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.055 0.945 52 H 0.073 0.927 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.041 -8.510 20.202 22.131 hybrid contribution 0.099 0.406 -1.601 1.655 sum -2.942 -8.104 18.601 20.502 Atomic orbital electron populations 1.22041 0.95787 1.00880 1.01099 1.21385 0.95217 0.82444 1.00525 1.44018 1.56048 1.12219 1.05155 1.19556 1.35733 1.07617 0.84037 0.91171 1.25785 0.96109 0.97243 1.00915 1.70179 1.23778 1.29817 1.27396 0.85190 0.78503 0.78324 0.77918 1.19694 1.20192 1.20538 1.20589 0.83429 0.86474 0.85775 1.90478 1.52921 1.20009 1.87383 1.22815 1.00867 0.97878 0.91872 0.86940 1.23330 0.99314 0.98695 0.95762 1.21728 0.89773 0.91510 0.91284 0.87697 1.44367 1.11052 1.44587 1.33923 1.18143 0.83139 0.78592 0.79582 1.90892 1.21142 1.66850 1.69134 1.86319 1.36838 1.56953 1.48150 1.22423 0.97320 0.87406 0.84017 1.22474 1.01091 1.01425 0.98675 1.21887 0.94624 1.01510 1.01260 1.22482 1.00665 0.98079 1.02594 1.21999 0.97623 0.93557 0.92874 1.21649 0.96319 1.00521 1.00207 1.21363 0.95765 0.98805 0.99581 0.94833 0.91661 0.92215 0.91118 0.92003 0.92009 0.89812 0.89729 0.74711 0.91862 0.89118 0.91938 0.91329 0.87950 0.91114 0.91982 0.89078 0.92110 0.91038 0.93220 0.91098 0.94511 0.92745 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 9.62 71.98 0.69 -4.91 16 2 C 0.13 5.50 5.06 86.38 0.44 5.94 16 3 N -0.46 -22.85 2.64 -635.55 -1.68 -24.52 16 4 C -0.34 -19.13 9.41 84.04 0.79 -18.34 16 5 H 0.07 4.28 7.32 -2.91 -0.02 4.26 16 6 C 0.00 0.08 4.92 84.93 0.42 0.50 16 7 N -0.87 -44.22 8.42 21.66 0.18 -44.03 16 8 Si 0.98 42.31 29.61 68.60 2.03 44.34 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.45 20.95 6.63 87.66 0.58 21.53 16 13 O -0.62 -33.14 12.73 -3.07 -0.04 -33.18 16 14 C -0.11 -3.85 2.35 -11.01 -0.03 -3.88 16 15 H 0.11 3.52 6.56 -2.39 -0.02 3.51 16 16 C -0.13 -3.98 5.87 31.12 0.18 -3.80 16 17 C 0.16 4.29 3.78 45.52 0.17 4.46 16 18 H 0.11 2.92 7.42 -2.39 -0.02 2.90 16 19 N -0.68 -15.79 4.72 -567.61 -2.68 -18.47 16 20 C 0.65 16.69 8.06 129.79 1.05 17.73 16 21 O -0.59 -17.74 11.48 19.81 0.23 -17.52 16 22 O -0.37 -8.23 9.94 -55.45 -0.55 -8.78 16 23 C 0.12 2.21 1.13 -10.79 -0.01 2.20 16 24 C -0.18 -3.10 8.37 71.98 0.60 -2.49 16 25 C -0.14 -1.55 8.85 71.98 0.64 -0.92 16 26 C -0.18 -3.29 8.37 71.98 0.60 -2.68 16 27 C -0.06 -1.74 1.21 -51.66 -0.06 -1.80 16 28 C -0.13 -3.20 8.95 71.98 0.64 -2.56 16 29 C -0.10 -3.26 7.36 71.98 0.53 -2.73 16 30 H 0.03 1.22 6.61 -2.39 -0.02 1.20 16 31 H 0.06 3.09 6.09 -2.39 -0.01 3.07 16 32 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 3.37 6.03 -2.39 -0.01 3.36 16 34 H 0.06 2.30 5.25 -2.39 -0.01 2.28 16 35 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 36 H 0.08 2.76 7.65 -2.39 -0.02 2.74 16 37 H 0.08 2.38 7.33 -2.38 -0.02 2.37 16 38 H 0.41 8.21 7.00 -92.71 -0.65 7.56 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.45 5.88 -2.39 -0.01 1.43 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.06 1.50 5.88 -2.38 -0.01 1.48 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.07 1.42 5.99 -2.39 -0.01 1.41 16 51 H 0.04 1.39 6.40 -2.38 -0.02 1.37 16 52 H 0.05 2.07 7.05 -2.39 -0.02 2.05 16 53 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -65.87 397.13 5.00 -60.88 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.27 Total: 33.01 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 7.24 Total: 8.27 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -4.17 Total: -87.02 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -0.36 Total: -59.48 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -65.87 5.00 -60.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874179437.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.199 kcal (2) G-P(sol) polarization free energy of solvation -65.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds