Wall clock time and date at job start Sat Apr 11 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47401 * 2 1 4 4 C 1.37100 * 120.00020 * 263.55982 * 3 2 1 5 5 H 1.08000 * 119.99685 * 188.38967 * 4 3 2 6 6 C 1.38951 * 119.99848 * 8.38601 * 4 3 2 7 7 N 1.31406 * 120.00152 * 25.16788 * 6 4 3 8 8 Si 1.86804 * 119.99576 * 205.16504 * 6 4 3 9 9 H 1.48498 * 109.46769 * 84.99076 * 8 6 4 10 10 H 1.48496 * 109.46703 * 204.98524 * 8 6 4 11 11 H 1.48494 * 109.47371 * 324.99099 * 8 6 4 12 12 C 1.34772 * 119.99860 * 83.55344 * 3 2 1 13 13 O 1.21295 * 120.00022 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00286 * 0.02562 * 12 3 2 15 15 C 1.52995 * 109.47430 * 179.97438 * 14 12 3 16 16 H 1.08998 * 110.91605 * 51.09700 * 15 14 12 17 17 C 1.54914 * 111.00341 * 287.19399 * 15 14 12 18 18 N 1.47421 * 104.83126 * 204.91225 * 17 15 14 19 19 C 1.34779 * 125.64997 * 204.09139 * 18 17 15 20 20 O 1.21513 * 119.99463 * 0.02562 * 19 18 17 21 21 O 1.34635 * 120.00128 * 180.02562 * 19 18 17 22 22 C 1.45198 * 116.99861 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.47141 * 60.00192 * 22 21 19 24 24 C 1.53004 * 109.46951 * 180.02562 * 22 21 19 25 25 C 1.53002 * 109.47188 * 300.00037 * 22 21 19 26 26 C 1.47027 * 108.70500 * 24.13321 * 18 17 15 27 27 C 1.54330 * 107.26654 * 358.93546 * 26 18 17 28 28 H 1.09003 * 110.71806 * 96.17685 * 27 26 18 29 29 C 1.53003 * 110.71685 * 219.26324 * 27 26 18 30 30 H 1.09003 * 109.47057 * 59.99996 * 1 2 3 31 31 H 1.08996 * 109.47074 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47301 * 300.00388 * 1 2 3 33 33 H 1.09000 * 109.47454 * 240.00366 * 2 1 3 34 34 H 1.09003 * 109.47057 * 120.00004 * 2 1 3 35 35 H 0.96996 * 119.99975 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47216 * 59.99657 * 14 12 3 37 37 H 1.08997 * 109.47006 * 299.99810 * 14 12 3 38 38 H 1.09003 * 110.36247 * 86.08078 * 17 15 14 39 39 H 1.08991 * 110.46267 * 323.80458 * 17 15 14 40 40 H 1.09003 * 109.47117 * 60.00182 * 23 22 21 41 41 H 1.09001 * 109.46882 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.47543 * 299.99940 * 23 22 21 43 43 H 1.08998 * 109.47203 * 60.00400 * 24 22 21 44 44 H 1.09001 * 109.47277 * 179.97438 * 24 22 21 45 45 H 1.09003 * 109.47174 * 299.99736 * 24 22 21 46 46 H 1.09003 * 109.47078 * 60.00032 * 25 22 21 47 47 H 1.09001 * 109.47121 * 180.02562 * 25 22 21 48 48 H 1.09002 * 109.46983 * 300.00130 * 25 22 21 49 49 H 1.09001 * 109.87939 * 239.51815 * 26 18 17 50 50 H 1.08994 * 109.88361 * 118.35283 * 26 18 17 51 51 H 1.09000 * 109.46537 * 56.16109 * 29 27 26 52 52 H 1.09001 * 109.46676 * 176.15724 * 29 27 26 53 53 H 1.08992 * 109.47446 * 296.15970 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8580 2.9478 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1283 0.4789 -2.4732 8 14 3.1404 1.7448 -3.8944 9 1 4.3645 0.9042 -3.8874 10 1 2.3537 1.4633 -5.1220 11 1 3.5247 3.1790 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5234 3.2039 1.1598 14 6 1.7307 1.3985 2.4568 15 6 1.9395 2.3792 3.6124 16 1 1.4561 3.3338 3.4048 17 6 3.4473 2.5734 3.9102 18 7 3.5022 2.9900 5.3232 19 6 4.4978 3.6950 5.8962 20 8 5.4557 4.0419 5.2339 21 8 4.4310 4.0148 7.2023 22 6 5.5387 4.7758 7.7521 23 6 5.6614 6.1073 7.0086 24 6 5.2870 5.0419 9.2376 25 6 6.8350 3.9796 7.5895 26 6 2.2915 2.5083 6.0043 27 6 1.4326 1.7784 4.9500 28 1 1.6125 0.7038 4.9830 29 6 -0.0525 2.0832 5.1566 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9430 0.0380 -3.3171 36 1 2.3497 0.5152 2.6139 37 1 0.6820 1.1043 2.4144 38 1 3.8635 3.3505 3.2692 39 1 3.9872 1.6371 3.7695 40 1 4.7378 6.6746 7.1245 41 1 6.4926 6.6788 7.4216 42 1 5.8408 5.9175 5.9504 43 1 5.2000 4.0931 9.7670 44 1 6.1187 5.6128 9.6505 45 1 4.3634 5.6090 9.3538 46 1 7.0145 3.7896 6.5313 47 1 7.6665 4.5507 8.0026 48 1 6.7476 3.0309 8.1192 49 1 1.7367 3.3519 6.4149 50 1 2.5648 1.8180 6.8022 51 1 -0.2087 3.1616 5.1326 52 1 -0.6334 1.6141 4.3624 53 1 -0.3731 1.6909 6.1216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930618644.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:56 Heat of formation + Delta-G solvation = -111.257658 kcal Electronic energy + Delta-G solvation = -31458.795440 eV Core-core repulsion = 27331.008687 eV Total energy + Delta-G solvation = -4127.786753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.78577 -39.35266 -38.15520 -36.58529 -35.07666 -34.21113 -32.97797 -31.88962 -31.00878 -29.38661 -27.57685 -27.48938 -27.16813 -26.41284 -24.70379 -22.86553 -22.08619 -21.25793 -20.13930 -19.35017 -18.69829 -17.76236 -16.80292 -16.67832 -16.30976 -15.98040 -15.51520 -14.89564 -14.62332 -14.46727 -14.30294 -14.05535 -13.84018 -13.57498 -13.30428 -13.20488 -12.73495 -12.68425 -12.64566 -12.50878 -12.26867 -12.09609 -12.01912 -11.98849 -11.89502 -11.75137 -11.51821 -11.38349 -11.33225 -11.20542 -11.07395 -10.82524 -10.70889 -10.55710 -10.42371 -10.37535 -10.24252 -10.09060 -9.95585 -9.81173 -8.88384 -8.60957 -8.31732 -7.74029 -6.34808 -3.75409 2.14414 2.94270 3.17514 3.27667 3.32700 3.89730 3.90918 4.13900 4.49630 4.57816 4.60386 4.61770 4.76437 4.81641 5.03833 5.08609 5.28625 5.31942 5.37324 5.38526 5.46131 5.46917 5.51771 5.52509 5.60482 5.62035 5.71803 5.73022 5.80824 5.89636 5.92109 5.96705 5.99443 6.12385 6.16227 6.18287 6.20833 6.28318 6.33339 6.35747 6.52021 6.57619 6.61583 6.65291 6.75669 7.26381 7.48031 7.59871 7.74015 8.11958 8.43406 8.53130 9.21206 9.47776 10.02790 10.66043 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002655 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.173723 B =10544.986761 C =11824.510344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.120 3.880 3 N -0.442 5.442 4 C -0.306 4.306 5 H 0.104 0.896 6 C 0.030 3.970 7 N -0.867 5.867 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.440 3.560 13 O -0.591 6.591 14 C -0.119 4.119 15 C -0.072 4.072 16 H 0.094 0.906 17 C 0.133 3.867 18 N -0.603 5.603 19 C 0.665 3.335 20 O -0.565 6.565 21 O -0.364 6.364 22 C 0.135 3.865 23 C -0.184 4.184 24 C -0.139 4.139 25 C -0.183 4.183 26 C 0.111 3.889 27 C -0.104 4.104 28 H 0.087 0.913 29 C -0.140 4.140 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.024 0.976 33 H 0.101 0.899 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 0.362 20.441 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.004 4.004 3 N -0.161 5.161 4 C -0.433 4.433 5 H 0.122 0.878 6 C -0.173 4.173 7 N -0.507 5.507 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.228 3.772 13 O -0.477 6.477 14 C -0.160 4.160 15 C -0.091 4.091 16 H 0.113 0.887 17 C 0.013 3.987 18 N -0.343 5.343 19 C 0.420 3.580 20 O -0.455 6.455 21 O -0.280 6.280 22 C 0.098 3.902 23 C -0.241 4.241 24 C -0.196 4.196 25 C -0.240 4.240 26 C -0.012 4.012 27 C -0.123 4.123 28 H 0.105 0.895 29 C -0.198 4.198 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.119 0.881 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.824 0.990 20.164 20.270 hybrid contribution 0.371 -0.093 -0.776 0.865 sum 2.195 0.897 19.388 19.532 Atomic orbital electron populations 1.22120 0.96744 0.99764 1.02007 1.21439 0.94446 0.83800 1.00693 1.43831 1.55395 1.11208 1.05618 1.19724 1.35903 1.05473 0.82200 0.87839 1.25162 0.96013 0.97230 0.98872 1.70104 1.25017 1.28942 1.26637 0.86089 0.80010 0.79217 0.80331 1.20420 1.21206 1.19514 1.19898 0.85307 0.86986 0.85015 1.90520 1.51922 1.18378 1.86856 1.21543 1.02818 0.98282 0.93349 1.22140 0.94372 1.00095 0.92506 0.88722 1.22375 0.97114 1.00962 0.78244 1.47238 1.19772 1.55305 1.12028 1.17498 0.81986 0.77931 0.80598 1.90912 1.32747 1.57971 1.63830 1.86291 1.47972 1.69498 1.24198 1.22031 0.84323 0.90588 0.93233 1.22520 1.02282 0.95542 1.03778 1.21842 1.02914 1.02627 0.92214 1.22517 0.96138 1.00055 1.05333 1.22101 0.85413 0.98370 0.95283 1.22343 0.95297 1.00242 0.94452 0.89506 1.21740 0.94233 1.02046 1.01750 0.89000 0.94429 0.95731 0.88121 0.95032 0.92351 0.90438 0.89511 0.88604 0.91595 0.92221 0.91288 0.89191 0.91600 0.90267 0.91543 0.89252 0.91280 0.92317 0.91284 0.91554 0.92304 0.91705 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.64 37.16 0.36 -2.58 16 2 C 0.12 2.56 5.07 -4.04 -0.02 2.54 16 3 N -0.44 -10.88 2.64 -114.81 -0.30 -11.18 16 4 C -0.31 -8.32 9.43 -14.93 -0.14 -8.46 16 5 H 0.10 3.02 7.31 -52.49 -0.38 2.64 16 6 C 0.03 0.76 4.90 -17.47 -0.09 0.68 16 7 N -0.87 -21.79 8.65 55.50 0.48 -21.31 16 8 Si 0.92 20.44 29.62 -169.99 -5.04 15.41 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.44 10.17 7.43 -10.99 -0.08 10.09 16 13 O -0.59 -15.71 14.55 5.54 0.08 -15.63 16 14 C -0.12 -2.01 3.83 -27.88 -0.11 -2.12 16 15 C -0.07 -1.10 2.03 -88.47 -0.18 -1.27 16 16 H 0.09 1.64 7.78 -51.93 -0.40 1.23 16 17 C 0.13 2.23 5.88 -2.53 -0.01 2.22 16 18 N -0.60 -9.17 3.33 -176.30 -0.59 -9.75 16 19 C 0.66 10.80 7.93 54.06 0.43 11.23 16 20 O -0.57 -10.57 12.14 -19.28 -0.23 -10.80 16 21 O -0.36 -5.04 9.49 -40.31 -0.38 -5.43 16 22 C 0.14 1.53 1.13 -90.62 -0.10 1.42 16 23 C -0.18 -2.11 8.37 37.15 0.31 -1.80 16 24 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 25 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 26 C 0.11 1.31 6.49 -3.06 -0.02 1.29 16 27 C -0.10 -1.18 3.01 -88.78 -0.27 -1.44 16 28 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 29 C -0.14 -1.36 9.15 37.16 0.34 -1.02 16 30 H 0.09 2.13 6.38 -51.93 -0.33 1.80 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.44 6.45 -51.93 -0.34 0.11 16 33 H 0.10 2.36 5.83 -51.93 -0.30 2.05 16 34 H 0.03 0.58 6.71 -51.93 -0.35 0.23 16 35 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 36 H 0.08 1.18 7.24 -51.93 -0.38 0.81 16 37 H 0.09 1.35 6.41 -51.93 -0.33 1.02 16 38 H 0.10 1.95 7.39 -51.93 -0.38 1.57 16 39 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 1.24 5.88 -51.93 -0.31 0.94 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.77 7.80 -51.93 -0.41 0.37 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 52 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 53 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 406.22 15.07 6.12 6.12 Total: -1.00 -30.78 406.22 -8.05 -38.83 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -9.25 Total: 5.46 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 1.06 Total: 8.29 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.41 Total: -42.24 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.54 Total: -31.86 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.04 Total: 15.41 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.78 -8.05 -38.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930618644.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.429 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds