Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47401 * 2 1 4 4 C 1.37100 * 120.00020 * 263.55982 * 3 2 1 5 5 H 1.08000 * 119.99685 * 188.38967 * 4 3 2 6 6 C 1.38951 * 119.99848 * 8.38601 * 4 3 2 7 7 N 1.31406 * 120.00152 * 25.16788 * 6 4 3 8 8 Si 1.86804 * 119.99576 * 205.16504 * 6 4 3 9 9 H 1.48498 * 109.46769 * 84.99076 * 8 6 4 10 10 H 1.48496 * 109.46703 * 204.98524 * 8 6 4 11 11 H 1.48494 * 109.47371 * 324.99099 * 8 6 4 12 12 C 1.34772 * 119.99860 * 83.55344 * 3 2 1 13 13 O 1.21295 * 120.00022 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00286 * 0.02562 * 12 3 2 15 15 C 1.52995 * 109.47430 * 179.97438 * 14 12 3 16 16 H 1.08998 * 110.91605 * 51.09700 * 15 14 12 17 17 C 1.54914 * 111.00341 * 287.19399 * 15 14 12 18 18 N 1.47421 * 104.83126 * 204.91225 * 17 15 14 19 19 C 1.34779 * 125.64997 * 204.09139 * 18 17 15 20 20 O 1.21513 * 119.99463 * 0.02562 * 19 18 17 21 21 O 1.34635 * 120.00128 * 180.02562 * 19 18 17 22 22 C 1.45198 * 116.99861 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.47141 * 60.00192 * 22 21 19 24 24 C 1.53004 * 109.46951 * 180.02562 * 22 21 19 25 25 C 1.53002 * 109.47188 * 300.00037 * 22 21 19 26 26 C 1.47027 * 108.70500 * 24.13321 * 18 17 15 27 27 C 1.54330 * 107.26654 * 358.93546 * 26 18 17 28 28 H 1.09003 * 110.71806 * 96.17685 * 27 26 18 29 29 C 1.53003 * 110.71685 * 219.26324 * 27 26 18 30 30 H 1.09003 * 109.47057 * 59.99996 * 1 2 3 31 31 H 1.08996 * 109.47074 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47301 * 300.00388 * 1 2 3 33 33 H 1.09000 * 109.47454 * 240.00366 * 2 1 3 34 34 H 1.09003 * 109.47057 * 120.00004 * 2 1 3 35 35 H 0.96996 * 119.99975 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47216 * 59.99657 * 14 12 3 37 37 H 1.08997 * 109.47006 * 299.99810 * 14 12 3 38 38 H 1.09003 * 110.36247 * 86.08078 * 17 15 14 39 39 H 1.08991 * 110.46267 * 323.80458 * 17 15 14 40 40 H 1.09003 * 109.47117 * 60.00182 * 23 22 21 41 41 H 1.09001 * 109.46882 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.47543 * 299.99940 * 23 22 21 43 43 H 1.08998 * 109.47203 * 60.00400 * 24 22 21 44 44 H 1.09001 * 109.47277 * 179.97438 * 24 22 21 45 45 H 1.09003 * 109.47174 * 299.99736 * 24 22 21 46 46 H 1.09003 * 109.47078 * 60.00032 * 25 22 21 47 47 H 1.09001 * 109.47121 * 180.02562 * 25 22 21 48 48 H 1.09002 * 109.46983 * 300.00130 * 25 22 21 49 49 H 1.09001 * 109.87939 * 239.51815 * 26 18 17 50 50 H 1.08994 * 109.88361 * 118.35283 * 26 18 17 51 51 H 1.09000 * 109.46537 * 56.16109 * 29 27 26 52 52 H 1.09001 * 109.46676 * 176.15724 * 29 27 26 53 53 H 1.08992 * 109.47446 * 296.15970 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8580 2.9478 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1283 0.4789 -2.4732 8 14 3.1404 1.7448 -3.8944 9 1 4.3645 0.9042 -3.8874 10 1 2.3537 1.4633 -5.1220 11 1 3.5247 3.1790 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5234 3.2039 1.1598 14 6 1.7307 1.3985 2.4568 15 6 1.9395 2.3792 3.6124 16 1 1.4561 3.3338 3.4048 17 6 3.4473 2.5734 3.9102 18 7 3.5022 2.9900 5.3232 19 6 4.4978 3.6950 5.8962 20 8 5.4557 4.0419 5.2339 21 8 4.4310 4.0148 7.2023 22 6 5.5387 4.7758 7.7521 23 6 5.6614 6.1073 7.0086 24 6 5.2870 5.0419 9.2376 25 6 6.8350 3.9796 7.5895 26 6 2.2915 2.5083 6.0043 27 6 1.4326 1.7784 4.9500 28 1 1.6125 0.7038 4.9830 29 6 -0.0525 2.0832 5.1566 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9430 0.0380 -3.3171 36 1 2.3497 0.5152 2.6139 37 1 0.6820 1.1043 2.4144 38 1 3.8635 3.3505 3.2692 39 1 3.9872 1.6371 3.7695 40 1 4.7378 6.6746 7.1245 41 1 6.4926 6.6788 7.4216 42 1 5.8408 5.9175 5.9504 43 1 5.2000 4.0931 9.7670 44 1 6.1187 5.6128 9.6505 45 1 4.3634 5.6090 9.3538 46 1 7.0145 3.7896 6.5313 47 1 7.6665 4.5507 8.0026 48 1 6.7476 3.0309 8.1192 49 1 1.7367 3.3519 6.4149 50 1 2.5648 1.8180 6.8022 51 1 -0.2087 3.1616 5.1326 52 1 -0.6334 1.6141 4.3624 53 1 -0.3731 1.6909 6.1216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930618644.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -128.946941 kcal Electronic energy + Delta-G solvation = -31459.562505 eV Core-core repulsion = 27331.008687 eV Total energy + Delta-G solvation = -4128.553818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.94228 -40.77685 -39.62432 -37.76280 -36.93829 -35.26738 -34.17205 -33.68744 -32.26914 -31.10576 -28.62859 -28.39079 -28.29338 -27.35291 -26.49825 -24.19866 -23.66839 -22.34624 -21.29199 -20.43063 -20.35595 -18.93175 -18.70756 -17.83534 -17.71730 -17.43338 -16.75022 -16.31427 -15.99275 -15.90093 -15.77775 -15.34549 -14.96842 -14.71789 -14.55532 -14.37118 -14.28432 -14.08405 -13.75753 -13.50359 -13.35775 -13.28995 -13.22228 -13.10232 -12.90118 -12.87820 -12.84673 -12.74515 -12.60534 -12.52734 -12.43461 -12.27685 -12.14521 -12.00715 -11.77931 -11.71604 -11.49858 -11.43297 -11.40841 -11.12504 -10.77988 -10.20099 -9.80722 -9.64847 -8.31033 -5.79146 1.02505 1.35864 1.42218 1.51740 1.70170 2.10481 2.29808 2.86698 3.08240 3.14516 3.47214 3.59894 3.74831 3.78090 3.82602 3.93665 4.11555 4.20978 4.34372 4.39866 4.45498 4.55681 4.56043 4.59289 4.64523 4.67314 4.73878 4.74293 4.76824 4.82015 4.86946 4.87398 4.93256 4.95969 5.03722 5.07470 5.14075 5.16152 5.20390 5.24442 5.26616 5.33750 5.37650 5.44354 5.47686 5.53455 5.56396 5.98534 6.13984 6.41409 6.59716 7.22351 7.25716 7.59831 8.16262 8.66948 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002655 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.173723 B =10544.986761 C =11824.510344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.119 3.881 3 N -0.457 5.457 4 C -0.348 4.348 5 H 0.065 0.935 6 C 0.007 3.993 7 N -0.866 5.866 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.284 1.284 12 C 0.427 3.573 13 O -0.639 6.639 14 C -0.104 4.104 15 C -0.067 4.067 16 H 0.067 0.933 17 C 0.137 3.863 18 N -0.606 5.606 19 C 0.658 3.342 20 O -0.600 6.600 21 O -0.360 6.360 22 C 0.122 3.878 23 C -0.182 4.182 24 C -0.131 4.131 25 C -0.179 4.179 26 C 0.108 3.892 27 C -0.087 4.087 28 H 0.112 0.888 29 C -0.138 4.138 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.272 0.728 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.049 0.951 52 H 0.066 0.934 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -1.686 23.191 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.004 4.004 3 N -0.175 5.175 4 C -0.476 4.476 5 H 0.083 0.917 6 C -0.196 4.196 7 N -0.504 5.504 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.197 1.197 11 H -0.209 1.209 12 C 0.217 3.783 13 O -0.528 6.528 14 C -0.144 4.144 15 C -0.087 4.087 16 H 0.085 0.915 17 C 0.016 3.984 18 N -0.346 5.346 19 C 0.414 3.586 20 O -0.492 6.492 21 O -0.275 6.275 22 C 0.085 3.915 23 C -0.239 4.239 24 C -0.188 4.188 25 C -0.236 4.236 26 C -0.013 4.013 27 C -0.106 4.106 28 H 0.130 0.870 29 C -0.196 4.196 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.112 0.888 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.109 0.891 51 H 0.068 0.932 52 H 0.085 0.915 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.688 -1.100 22.935 22.971 hybrid contribution 0.742 0.603 -1.642 1.900 sum 1.430 -0.497 21.293 21.346 Atomic orbital electron populations 1.21967 0.95449 1.01245 1.00968 1.21537 0.95473 0.82038 1.01326 1.44078 1.55678 1.12490 1.05266 1.19489 1.38343 1.05364 0.84405 0.91652 1.25716 0.96391 0.97073 1.00439 1.70178 1.24428 1.28406 1.27399 0.85287 0.78937 0.78200 0.77908 1.19698 1.19685 1.20925 1.21046 0.83870 0.86684 0.86674 1.90496 1.53620 1.20810 1.87826 1.21498 1.04390 0.98686 0.89844 1.22015 0.93144 0.99045 0.94471 0.91468 1.22164 0.98187 0.99339 0.78735 1.47315 1.20666 1.55085 1.11581 1.17724 0.81781 0.77806 0.81289 1.90903 1.34256 1.59191 1.64823 1.86304 1.49099 1.69618 1.22475 1.22483 0.83899 0.89948 0.95132 1.22485 1.03407 0.96336 1.01654 1.21862 1.04183 1.03536 0.89205 1.22468 0.97022 1.00942 1.03200 1.22365 0.84016 0.99200 0.95729 1.22342 0.96196 1.01199 0.90876 0.86989 1.21752 0.92713 1.01723 1.03375 0.92710 0.91553 0.94061 0.90447 0.91331 0.91769 0.87845 0.87147 0.93693 0.91065 0.92057 0.88698 0.92974 0.90775 0.87778 0.91155 0.92798 0.88816 0.91540 0.90590 0.89105 0.93234 0.91507 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.64 71.98 0.69 -4.53 16 2 C 0.12 4.95 5.07 86.38 0.44 5.38 16 3 N -0.46 -22.99 2.64 -635.52 -1.68 -24.66 16 4 C -0.35 -19.87 9.43 84.04 0.79 -19.08 16 5 H 0.07 4.13 7.31 -2.91 -0.02 4.11 16 6 C 0.01 0.36 4.90 84.93 0.42 0.77 16 7 N -0.87 -43.52 8.65 21.66 0.19 -43.33 16 8 Si 0.97 42.73 29.62 68.60 2.03 44.76 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 C 0.43 20.33 7.43 87.66 0.65 20.98 16 13 O -0.64 -36.32 14.55 -3.08 -0.04 -36.36 16 14 C -0.10 -3.36 3.83 29.85 0.11 -3.25 16 15 C -0.07 -2.03 2.03 -9.40 -0.02 -2.05 16 16 H 0.07 2.41 7.78 -2.39 -0.02 2.39 16 17 C 0.14 4.78 5.88 86.86 0.51 5.29 16 18 N -0.61 -18.56 3.33 -942.08 -3.13 -21.69 16 19 C 0.66 22.06 7.93 129.79 1.03 23.09 16 20 O -0.60 -24.05 12.14 19.80 0.24 -23.81 16 21 O -0.36 -9.79 9.49 -55.44 -0.53 -10.31 16 22 C 0.12 2.63 1.13 -10.79 -0.01 2.62 16 23 C -0.18 -4.17 8.37 71.98 0.60 -3.56 16 24 C -0.13 -1.71 8.85 71.98 0.64 -1.08 16 25 C -0.18 -3.83 8.37 71.98 0.60 -3.23 16 26 C 0.11 2.30 6.49 86.73 0.56 2.86 16 27 C -0.09 -1.71 3.01 -9.60 -0.03 -1.74 16 28 H 0.11 1.72 8.04 -2.39 -0.02 1.70 16 29 C -0.14 -2.20 9.15 71.98 0.66 -1.54 16 30 H 0.05 2.50 6.38 -2.39 -0.02 2.48 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.39 6.45 -2.39 -0.02 1.37 16 33 H 0.08 3.58 5.83 -2.39 -0.01 3.57 16 34 H 0.07 2.31 6.71 -2.39 -0.02 2.30 16 35 H 0.27 12.86 8.31 -92.71 -0.77 12.08 16 36 H 0.10 2.85 7.24 -2.39 -0.02 2.83 16 37 H 0.11 3.08 6.41 -2.39 -0.02 3.07 16 38 H 0.04 2.01 7.39 -2.39 -0.02 1.99 16 39 H 0.07 2.35 7.91 -2.39 -0.02 2.33 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.62 5.88 -2.39 -0.01 1.60 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.05 1.57 5.88 -2.39 -0.01 1.55 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.08 1.52 7.80 -2.39 -0.02 1.50 16 50 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 52 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -74.34 406.22 5.61 -68.73 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.88 Total: 25.74 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 7.65 Total: 20.95 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.62 Total: -89.69 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -0.33 Total: -70.49 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.34 5.61 -68.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930618644.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.220 kcal (2) G-P(sol) polarization free energy of solvation -74.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds