Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46883 * 2 1 4 4 C 1.37101 * 119.99940 * 95.61478 * 3 2 1 5 5 H 1.07997 * 119.99989 * 216.27506 * 4 3 2 6 6 C 1.38950 * 119.99841 * 36.26544 * 4 3 2 7 7 N 1.31412 * 119.99828 * 30.18987 * 6 4 3 8 8 Si 1.86803 * 119.99949 * 210.18503 * 6 4 3 9 9 H 1.48505 * 109.47235 * 270.00240 * 8 6 4 10 10 H 1.48499 * 109.46869 * 30.00307 * 8 6 4 11 11 H 1.48498 * 109.46905 * 150.00586 * 8 6 4 12 12 C 1.34776 * 120.00017 * 275.61103 * 3 2 1 13 13 O 1.21291 * 120.00188 * 355.21735 * 12 3 2 14 14 C 1.50702 * 119.99778 * 175.21687 * 12 3 2 15 15 H 1.08999 * 109.46035 * 46.59418 * 14 12 3 16 16 C 1.53033 * 109.46139 * 286.62055 * 14 12 3 17 17 C 1.53198 * 109.31705 * 178.60193 * 16 14 12 18 18 N 1.46930 * 108.75881 * 54.65242 * 17 16 14 19 19 C 1.34780 * 120.62736 * 126.41310 * 18 17 16 20 20 O 1.21507 * 119.99848 * 185.46139 * 19 18 17 21 21 O 1.34641 * 119.99963 * 5.46055 * 19 18 17 22 22 C 1.45196 * 116.99750 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47163 * 59.99724 * 22 21 19 24 24 C 1.53008 * 109.47053 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.47261 * 299.99584 * 22 21 19 26 26 C 1.46923 * 118.74085 * 306.37978 * 18 17 16 27 27 H 1.08990 * 109.59324 * 293.82595 * 26 18 17 28 28 C 1.53000 * 109.70227 * 173.46965 * 26 18 17 29 29 C 1.53044 * 109.46044 * 166.56152 * 14 12 3 30 30 H 1.09003 * 109.46920 * 299.99434 * 1 2 3 31 31 H 1.08989 * 109.47124 * 59.99741 * 1 2 3 32 32 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46797 * 239.99858 * 2 1 3 34 34 H 1.09002 * 109.47307 * 119.99962 * 2 1 3 35 35 H 0.96996 * 120.00674 * 3.68362 * 7 6 4 36 36 H 1.09001 * 109.49876 * 298.56525 * 16 14 12 37 37 H 1.09002 * 109.49958 * 58.66287 * 16 14 12 38 38 H 1.08999 * 109.59576 * 294.86852 * 17 16 14 39 39 H 1.08997 * 109.70392 * 174.50406 * 17 16 14 40 40 H 1.08997 * 109.47067 * 60.00036 * 23 22 21 41 41 H 1.09000 * 109.46939 * 179.97438 * 23 22 21 42 42 H 1.08991 * 109.47369 * 299.99938 * 23 22 21 43 43 H 1.08998 * 109.47048 * 59.99670 * 24 22 21 44 44 H 1.08997 * 109.46835 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.46799 * 300.00055 * 24 22 21 46 46 H 1.09004 * 109.47116 * 60.00292 * 25 22 21 47 47 H 1.08997 * 109.47549 * 179.97438 * 25 22 21 48 48 H 1.08998 * 109.47029 * 300.00445 * 25 22 21 49 49 H 1.09004 * 109.47086 * 302.22958 * 28 26 18 50 50 H 1.08995 * 109.47426 * 62.22943 * 28 26 18 51 51 H 1.09000 * 109.47488 * 182.23520 * 28 26 18 52 52 H 1.08997 * 109.49907 * 301.33992 * 29 14 12 53 53 H 1.09001 * 109.49016 * 61.40319 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3563 1.9888 1.1816 5 1 2.1531 3.0396 1.3260 6 6 2.9602 1.2525 2.1935 7 7 3.7276 0.2289 1.8930 8 14 2.6813 1.7178 3.9811 9 1 3.7203 2.6893 4.4077 10 1 1.3379 2.3332 4.1285 11 1 2.7640 0.5008 4.8280 12 6 2.1353 2.0546 -1.1616 13 8 1.9198 1.4910 -2.2137 14 6 2.5340 3.5079 -1.1532 15 1 3.3861 3.6469 -0.4878 16 6 1.3591 4.3560 -0.6609 17 6 1.7791 5.8288 -0.6204 18 7 2.2866 6.2120 -1.9450 19 6 1.7813 7.2816 -2.5907 20 8 2.1378 7.5305 -3.7254 21 8 0.8815 8.0744 -1.9786 22 6 0.3797 9.2080 -2.7345 23 6 -0.3100 8.7084 -4.0055 24 6 -0.6249 9.9853 -1.8815 25 6 1.5448 10.1246 -3.1131 26 6 3.3558 5.4075 -2.5518 27 1 4.2681 5.5094 -1.9643 28 6 3.6114 5.8845 -3.9828 29 6 2.9182 3.9395 -2.5703 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9157 0.0197 0.9648 36 1 0.5148 4.2369 -1.3398 37 1 1.0708 4.0326 0.3393 38 1 2.5630 5.9650 0.1247 39 1 0.9201 6.4490 -0.3647 40 1 -1.1400 8.0554 -3.7358 41 1 -0.6871 9.5593 -4.5727 42 1 0.4053 8.1544 -4.6133 43 1 -0.1340 10.3412 -0.9758 44 1 -1.0013 10.8365 -2.4488 45 1 -1.4549 9.3320 -1.6121 46 1 2.2602 9.5706 -3.7209 47 1 1.1682 10.9753 -3.6809 48 1 2.0362 10.4805 -2.2076 49 1 2.6893 5.8130 -4.5598 50 1 3.9496 6.9205 -3.9656 51 1 4.3771 5.2599 -4.4428 52 1 3.7396 3.3195 -2.9294 53 1 2.0591 3.8237 -3.2312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930618668.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -125.599348 kcal Electronic energy + Delta-G solvation = -32437.549697 eV Core-core repulsion = 28309.141042 eV Total energy + Delta-G solvation = -4128.408655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14509 -40.99505 -39.46277 -37.56367 -37.02558 -35.26145 -34.03350 -33.65759 -33.33239 -31.47344 -28.66147 -28.31475 -28.24416 -26.51924 -26.35860 -24.35730 -23.87897 -22.77073 -21.58638 -21.04961 -20.27097 -19.01250 -18.47305 -17.74902 -17.58643 -17.18894 -16.75437 -16.49658 -16.15963 -15.67230 -15.51722 -15.46491 -15.17452 -14.92894 -14.74236 -14.53517 -14.49649 -14.42107 -13.62798 -13.56847 -13.49305 -13.20693 -13.13790 -13.07102 -12.97328 -12.84413 -12.81802 -12.72369 -12.70137 -12.57887 -12.39735 -12.10242 -12.03768 -12.00112 -11.87417 -11.71917 -11.61877 -11.56292 -11.27981 -10.90599 -10.40226 -10.25142 -9.72001 -9.68033 -8.67735 -6.03312 1.15654 1.58483 1.66359 1.79995 1.88660 1.99743 2.46150 2.79175 2.84796 3.10716 3.69558 3.79748 3.82541 3.84587 3.87207 3.98936 4.00356 4.14416 4.21443 4.24599 4.38255 4.45425 4.54686 4.55513 4.55882 4.65777 4.68302 4.70496 4.75088 4.80746 4.81632 4.85830 4.88671 4.92144 4.92283 4.96135 5.02488 5.09730 5.11211 5.15477 5.23953 5.29889 5.32946 5.33973 5.39192 5.53025 5.61169 5.72379 6.04177 6.39870 6.41152 7.05831 7.34225 7.56937 7.92755 8.54033 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003204 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.188990 B = 8738.335569 C = 9356.540436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.100 3.900 3 N -0.457 5.457 4 C -0.439 4.439 5 H 0.102 0.898 6 C -0.021 4.021 7 N -0.887 5.887 8 Si 1.115 2.885 9 H -0.270 1.270 10 H -0.262 1.262 11 H -0.289 1.289 12 C 0.460 3.540 13 O -0.639 6.639 14 C -0.079 4.079 15 H 0.093 0.907 16 C -0.111 4.111 17 C 0.123 3.877 18 N -0.593 5.593 19 C 0.649 3.351 20 O -0.576 6.576 21 O -0.370 6.370 22 C 0.125 3.875 23 C -0.179 4.179 24 C -0.135 4.135 25 C -0.176 4.176 26 C 0.164 3.836 27 H 0.092 0.908 28 C -0.123 4.123 29 C -0.097 4.097 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.260 0.740 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.072 0.928 51 H 0.057 0.943 52 H 0.068 0.932 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 18.750 -3.065 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 N -0.175 5.175 4 C -0.565 4.565 5 H 0.119 0.881 6 C -0.225 4.225 7 N -0.520 5.520 8 Si 0.935 3.065 9 H -0.196 1.196 10 H -0.186 1.186 11 H -0.215 1.215 12 C 0.251 3.749 13 O -0.527 6.527 14 C -0.100 4.100 15 H 0.111 0.889 16 C -0.150 4.150 17 C 0.001 3.999 18 N -0.333 5.333 19 C 0.405 3.595 20 O -0.468 6.468 21 O -0.285 6.285 22 C 0.088 3.912 23 C -0.236 4.236 24 C -0.192 4.192 25 C -0.234 4.234 26 C 0.062 3.938 27 H 0.110 0.890 28 C -0.180 4.180 29 C -0.136 4.136 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.086 0.914 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.568 18.146 -2.349 19.126 hybrid contribution -0.135 -0.473 -1.873 1.937 sum -5.703 17.673 -4.222 19.045 Atomic orbital electron populations 1.21877 0.94865 1.02125 1.01042 1.21318 0.95230 0.85333 1.00472 1.43838 1.55692 1.11905 1.06070 1.20582 1.44518 0.98740 0.92706 0.88066 1.27664 0.90916 0.94855 1.09074 1.70843 1.28384 1.31233 1.21569 0.82947 0.77816 0.76232 0.69484 1.19594 1.18636 1.21513 1.21154 0.80191 0.90645 0.82937 1.90489 1.57866 1.71795 1.32580 1.20908 1.00222 0.90840 0.98078 0.88936 1.21768 0.96242 0.94569 1.02422 1.21770 1.00889 0.94242 0.82968 1.47178 1.39154 1.26603 1.20368 1.18176 0.78287 0.80235 0.82831 1.90932 1.63504 1.74481 1.17848 1.86315 1.55509 1.39373 1.47340 1.22376 0.94468 0.82614 0.91707 1.22462 1.00753 1.02929 0.97490 1.21876 0.97320 0.99810 1.00224 1.22445 0.98397 0.99956 1.02564 1.21303 0.88318 0.88109 0.96028 0.89009 1.22077 1.01423 1.01185 0.93325 1.21695 1.01304 0.95132 0.95432 0.92224 0.94441 0.90467 0.94387 0.91038 0.93009 0.93356 0.89245 0.89262 0.87700 0.92706 0.89097 0.91929 0.91124 0.87994 0.91617 0.91733 0.89237 0.92029 0.92963 0.90924 0.92464 0.91360 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 10.20 71.98 0.73 -4.85 16 2 C 0.10 4.72 5.23 86.38 0.45 5.18 16 3 N -0.46 -22.13 2.32 -635.53 -1.47 -23.61 16 4 C -0.44 -20.76 7.98 84.04 0.67 -20.08 16 5 H 0.10 4.42 5.41 -2.91 -0.02 4.40 16 6 C -0.02 -1.01 4.65 84.93 0.39 -0.61 16 7 N -0.89 -47.47 12.35 21.66 0.27 -47.20 16 8 Si 1.11 42.00 30.01 68.60 2.06 44.06 16 9 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 10 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 11 H -0.29 -11.30 7.11 99.48 0.71 -10.59 16 12 C 0.46 21.94 6.83 87.66 0.60 22.53 16 13 O -0.64 -34.13 15.66 -3.06 -0.05 -34.18 16 14 C -0.08 -3.01 1.68 -11.51 -0.02 -3.03 16 15 H 0.09 3.55 7.51 -2.39 -0.02 3.53 16 16 C -0.11 -3.62 5.10 30.67 0.16 -3.46 16 17 C 0.12 3.20 6.43 86.36 0.56 3.76 16 18 N -0.59 -16.73 2.97 -925.23 -2.75 -19.48 16 19 C 0.65 18.62 7.65 129.79 0.99 19.62 16 20 O -0.58 -17.67 7.29 19.82 0.14 -17.52 16 21 O -0.37 -9.34 8.55 -55.50 -0.47 -9.82 16 22 C 0.12 2.45 1.13 -10.79 -0.01 2.44 16 23 C -0.18 -3.62 8.37 71.98 0.60 -3.02 16 24 C -0.14 -1.82 8.85 71.98 0.64 -1.19 16 25 C -0.18 -3.26 8.37 71.98 0.60 -2.65 16 26 C 0.16 4.72 3.49 44.98 0.16 4.88 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 C -0.12 -3.44 7.60 71.98 0.55 -2.90 16 29 C -0.10 -3.39 4.01 30.67 0.12 -3.26 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 33 H 0.04 1.88 7.53 -2.39 -0.02 1.86 16 34 H 0.07 3.54 5.79 -2.39 -0.01 3.53 16 35 H 0.26 14.68 7.52 -92.71 -0.70 13.99 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 2.99 5.99 -2.39 -0.01 2.98 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.10 2.44 6.97 -2.39 -0.02 2.42 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.06 1.53 5.88 -2.38 -0.01 1.52 16 47 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.05 1.66 6.88 -2.39 -0.02 1.64 16 50 H 0.07 2.05 6.63 -2.39 -0.02 2.03 16 51 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 52 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 53 H 0.05 1.95 8.00 -2.39 -0.02 1.93 16 Total: -1.00 -62.89 400.14 5.88 -57.01 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.96 Total: 37.38 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 7.19 Total: 13.35 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.95 Total: -90.28 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -0.38 Total: -61.52 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.06 Total: 44.06 kcal Total: -62.89 5.88 -57.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930618668.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.586 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds