Wall clock time and date at job start Sat Apr 11 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.47065 * 2 1 4 4 C 1.42902 * 113.99645 * 184.43135 * 3 2 1 5 5 H 1.08996 * 109.47171 * 344.03990 * 4 3 2 6 6 C 1.50698 * 109.46875 * 224.03904 * 4 3 2 7 7 O 1.21285 * 120.00365 * 355.00535 * 6 4 3 8 8 N 1.34780 * 120.00208 * 175.00292 * 6 4 3 9 9 C 1.46923 * 120.62598 * 359.72131 * 8 6 4 10 10 C 1.52761 * 109.00872 * 233.58683 * 9 8 6 11 11 C 1.53049 * 109.38212 * 305.58939 * 10 9 8 12 12 N 1.46495 * 109.44935 * 181.25360 * 11 10 9 13 13 C 1.36940 * 120.00145 * 303.68403 * 12 11 10 14 14 H 1.07996 * 119.99928 * 322.42292 * 13 12 11 15 15 C 1.38815 * 120.00000 * 142.41967 * 13 12 11 16 16 N 1.31621 * 119.99809 * 337.65101 * 15 13 12 17 17 Si 1.86794 * 120.00030 * 157.65039 * 15 13 12 18 18 H 1.48498 * 109.47106 * 89.99897 * 17 15 13 19 19 H 1.48504 * 109.47103 * 209.99839 * 17 15 13 20 20 H 1.48502 * 109.47017 * 329.99874 * 17 15 13 21 21 C 1.46497 * 119.99882 * 123.68698 * 12 11 10 22 22 C 1.52996 * 109.47479 * 90.00134 * 21 12 11 23 23 O 1.42904 * 109.47261 * 64.99877 * 22 21 12 24 24 C 1.53039 * 109.53761 * 61.23988 * 11 10 9 25 25 C 1.46922 * 120.63238 * 180.02562 * 8 6 4 26 26 C 1.53002 * 109.47170 * 104.04525 * 4 3 2 27 27 C 1.53007 * 117.49491 * 4.35003 * 26 4 3 28 28 C 1.53000 * 117.49550 * 295.73136 * 26 4 3 29 29 H 1.09003 * 109.46610 * 299.99839 * 1 2 3 30 30 H 1.08991 * 109.47041 * 59.99955 * 1 2 3 31 31 H 1.09003 * 109.46718 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47284 * 239.99937 * 2 1 3 33 33 H 1.09001 * 109.46944 * 119.99945 * 2 1 3 34 34 H 1.08999 * 109.59294 * 353.41786 * 9 8 6 35 35 H 1.08999 * 109.58494 * 113.84481 * 9 8 6 36 36 H 1.08998 * 109.57073 * 185.55752 * 10 9 8 37 37 H 1.08999 * 109.38666 * 65.51251 * 10 9 8 38 38 H 1.09002 * 109.45707 * 301.21766 * 11 10 9 39 39 H 0.96997 * 120.00156 * 180.02562 * 16 15 13 40 40 H 1.09007 * 109.46938 * 210.00021 * 21 12 11 41 41 H 1.08998 * 109.47153 * 329.99906 * 21 12 11 42 42 H 1.09000 * 109.47798 * 184.99909 * 22 21 12 43 43 H 1.08999 * 109.47114 * 305.00020 * 22 21 12 44 44 H 0.96699 * 113.99819 * 180.02562 * 23 22 21 45 45 H 1.08993 * 109.49719 * 178.68439 * 24 11 10 46 46 H 1.09005 * 109.52655 * 58.60139 * 24 11 10 47 47 H 1.09001 * 109.58670 * 246.15333 * 25 8 6 48 48 H 1.09004 * 109.59036 * 6.43676 * 25 8 6 49 49 H 1.08997 * 115.55079 * 150.05865 * 26 4 3 50 50 H 1.08996 * 117.50365 * 0.02562 * 27 26 4 51 51 H 1.09000 * 117.49372 * 145.02394 * 27 26 4 52 52 H 1.09004 * 117.49723 * 214.97746 * 28 26 4 53 53 H 1.09004 * 117.50141 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4273 1.4614 -0.1009 5 1 3.8859 0.4986 0.1242 6 6 3.9192 2.4938 0.8805 7 8 3.1247 3.1392 1.5311 8 7 5.2421 2.7000 1.0353 9 6 6.2168 1.9218 0.2588 10 6 7.2152 1.2760 1.2179 11 6 7.8371 2.3557 2.1066 12 7 8.8167 1.7421 3.0066 13 6 8.4384 0.7209 3.8367 14 1 7.4641 0.7362 4.3023 15 6 9.3072 -0.3342 4.0797 16 7 10.2711 -0.6032 3.2247 17 14 9.1083 -1.3721 5.6199 18 1 8.1997 -2.5116 5.3350 19 1 10.4344 -1.8901 6.0424 20 1 8.5328 -0.5398 6.7068 21 6 10.2011 2.2212 3.0185 22 6 10.3429 3.3458 4.0461 23 8 10.1116 2.8254 5.3568 24 6 6.7408 3.0333 2.9319 25 6 5.7370 3.7026 1.9885 26 6 3.8052 1.8870 -1.5211 27 6 2.6647 2.2008 -2.4915 28 6 3.4804 0.9173 -2.6591 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.6992 1.1456 -0.3047 35 1 6.7478 2.5817 -0.4273 36 1 7.9994 0.7780 0.6477 37 1 6.6983 0.5457 1.8404 38 1 8.3332 3.0987 1.4821 39 1 10.8779 -1.3406 3.3942 40 1 10.8673 1.4003 3.2841 41 1 10.4640 2.5972 2.0298 42 1 11.3488 3.7621 3.9929 43 1 9.6143 4.1277 3.8319 44 1 10.1849 3.4847 6.0603 45 1 7.1873 3.7860 3.5816 46 1 6.2278 2.2871 3.5387 47 1 6.2280 4.5109 1.4466 48 1 4.9023 4.1029 2.5642 49 1 4.7172 2.4775 -1.6079 50 1 1.6452 2.1046 -2.1182 51 1 2.8263 2.9982 -3.2170 52 1 4.1786 0.8701 -3.4948 53 1 2.9978 -0.0240 -2.3960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098367862.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:47 Heat of formation + Delta-G solvation = -96.250730 kcal Electronic energy + Delta-G solvation = -32013.729839 eV Core-core repulsion = 27886.593835 eV Total energy + Delta-G solvation = -4127.136004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60932 -39.74890 -38.77469 -37.66103 -36.97180 -36.16818 -33.83487 -32.65941 -32.03408 -31.94819 -29.56347 -28.78368 -26.47123 -24.80018 -24.14046 -23.89536 -22.98560 -22.59952 -21.89300 -21.40018 -20.28070 -18.58380 -18.16743 -17.95104 -17.87366 -17.24422 -16.85787 -16.70212 -16.09757 -15.91299 -15.69310 -15.58350 -15.42665 -15.05739 -14.67383 -14.57626 -14.25917 -14.11836 -13.76440 -13.71529 -13.54220 -13.21581 -13.14861 -13.04702 -12.98898 -12.73760 -12.56070 -12.46872 -12.38199 -12.24481 -12.19599 -12.07540 -11.80295 -11.63624 -11.57178 -11.46735 -11.20389 -11.07767 -10.84755 -10.60195 -10.37058 -10.28897 -9.65294 -8.42959 -7.72186 -5.28280 1.41879 1.46599 1.51051 1.56126 1.75939 2.57293 2.67518 2.99026 3.37419 3.38600 3.58239 3.67345 3.83731 3.86179 3.97099 4.08860 4.13039 4.17220 4.22173 4.26442 4.26897 4.36774 4.40611 4.45624 4.52341 4.59675 4.64699 4.71413 4.77904 4.81304 4.84239 4.87025 4.91776 4.93763 4.99209 5.04359 5.09669 5.15239 5.20129 5.20924 5.25689 5.35703 5.45594 5.61722 5.67778 5.76956 5.86844 6.06792 6.40185 6.57389 7.12210 7.21800 7.31643 8.00702 8.48895 9.23600 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.003170 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.446564 B = 8830.096944 C = 9478.420730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.375 6.375 4 C 0.109 3.891 5 H 0.099 0.901 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.600 5.600 9 C 0.113 3.887 10 C -0.124 4.124 11 C 0.172 3.828 12 N -0.583 5.583 13 C -0.219 4.219 14 H 0.033 0.967 15 C -0.023 4.023 16 N -0.914 5.914 17 Si 0.934 3.066 18 H -0.289 1.289 19 H -0.295 1.295 20 H -0.285 1.285 21 C 0.137 3.863 22 C 0.067 3.933 23 O -0.576 6.576 24 C -0.125 4.125 25 C 0.121 3.879 26 C -0.190 4.190 27 C -0.163 4.163 28 C -0.154 4.154 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.245 0.755 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.372 0.628 45 H 0.066 0.934 46 H 0.030 0.970 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.125 0.875 50 H 0.093 0.907 51 H 0.104 0.896 52 H 0.117 0.883 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 5.588 -13.312 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.294 6.294 4 C 0.048 3.952 5 H 0.117 0.883 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.334 5.334 9 C -0.009 4.009 10 C -0.164 4.164 11 C 0.066 3.934 12 N -0.303 5.303 13 C -0.350 4.350 14 H 0.051 0.949 15 C -0.219 4.219 16 N -0.559 5.559 17 Si 0.765 3.235 18 H -0.217 1.217 19 H -0.221 1.221 20 H -0.211 1.211 21 C 0.011 3.989 22 C -0.013 4.013 23 O -0.381 6.381 24 C -0.165 4.165 25 C -0.002 4.002 26 C -0.209 4.209 27 C -0.200 4.200 28 C -0.191 4.191 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.218 0.782 45 H 0.084 0.916 46 H 0.049 0.951 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.143 0.857 50 H 0.111 0.889 51 H 0.122 0.878 52 H 0.135 0.865 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.801 5.395 -13.303 17.965 hybrid contribution 0.498 -0.468 1.905 2.024 sum -10.304 4.927 -11.398 16.136 Atomic orbital electron populations 1.21736 0.92374 1.03490 1.02700 1.22915 0.96897 0.82611 1.00899 1.88006 1.18959 1.28018 1.94370 1.21318 0.83319 0.97485 0.93106 0.88332 1.21046 0.82062 0.84035 0.83119 1.90644 1.55494 1.50452 1.49016 1.48182 1.05056 1.38901 1.41222 1.21989 0.89969 0.95665 0.93266 1.22037 0.97899 0.98750 0.97723 1.20530 0.89424 0.93366 0.90082 1.43866 1.05814 1.37599 1.43023 1.18588 1.00445 0.97416 1.18576 0.94911 1.25374 0.99731 0.97515 0.99305 1.70067 1.21055 1.30182 1.34644 0.85814 0.76236 0.78808 0.82650 1.21669 1.22150 1.21124 1.21000 0.87882 0.95524 0.94503 1.22923 0.97476 0.96774 0.84093 1.86793 1.94610 1.39962 1.16724 1.22188 0.96950 0.99226 0.98157 1.21576 0.97012 0.90516 0.91048 1.22717 1.02165 1.07284 0.88745 1.22932 0.96499 0.99924 1.00678 1.23128 1.03067 0.94050 0.98837 0.93188 0.91432 0.88811 0.90994 0.93837 0.88203 0.88549 0.91744 0.94509 0.91130 0.94527 0.92148 0.92631 0.93739 0.94367 0.78169 0.91581 0.95129 0.89088 0.91115 0.85707 0.88857 0.87751 0.86472 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.28 71.98 0.74 -1.69 16 2 C 0.04 0.85 6.39 71.98 0.46 1.31 16 3 O -0.37 -10.09 7.88 -129.99 -1.02 -11.11 16 4 C 0.11 2.73 2.12 29.85 0.06 2.80 16 5 H 0.10 2.27 6.95 -2.39 -0.02 2.25 16 6 C 0.51 16.42 7.09 87.66 0.62 17.04 16 7 O -0.58 -23.55 15.92 15.94 0.25 -23.29 16 8 N -0.60 -17.40 2.97 -819.80 -2.44 -19.84 16 9 C 0.11 2.79 4.93 86.22 0.43 3.22 16 10 C -0.12 -4.27 5.23 30.53 0.16 -4.11 16 11 C 0.17 6.31 2.60 45.02 0.12 6.43 16 12 N -0.58 -26.69 2.34 -677.88 -1.59 -28.28 16 13 C -0.22 -11.71 7.62 84.03 0.64 -11.07 16 14 H 0.03 1.87 7.05 -2.91 -0.02 1.85 16 15 C -0.02 -1.25 4.93 84.86 0.42 -0.83 16 16 N -0.91 -52.22 11.53 21.65 0.25 -51.97 16 17 Si 0.93 46.51 29.61 68.60 2.03 48.54 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 C 0.14 5.98 5.70 86.38 0.49 6.48 16 22 C 0.07 2.44 7.39 71.98 0.53 2.98 16 23 O -0.58 -23.51 13.13 -148.98 -1.96 -25.47 16 24 C -0.12 -4.40 5.36 30.66 0.16 -4.23 16 25 C 0.12 3.61 6.43 86.35 0.56 4.17 16 26 C -0.19 -3.62 4.51 -10.79 -0.05 -3.67 16 27 C -0.16 -2.83 9.87 30.60 0.30 -2.53 16 28 C -0.15 -2.16 10.22 30.59 0.31 -1.85 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.10 6.36 -2.39 -0.02 1.09 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 2.08 5.05 -2.39 -0.01 2.07 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.04 1.51 7.63 -2.39 -0.02 1.49 16 38 H 0.07 2.27 7.77 -2.39 -0.02 2.25 16 39 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.06 3.18 5.56 -2.38 -0.01 3.17 16 41 H 0.06 2.16 7.89 -2.39 -0.02 2.14 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.37 10.89 9.12 -74.06 -0.68 10.21 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.03 1.28 7.19 -2.38 -0.02 1.26 16 47 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.07 2.34 7.00 -2.38 -0.02 2.32 16 49 H 0.13 2.20 6.66 -2.39 -0.02 2.19 16 50 H 0.09 1.88 7.03 -2.39 -0.02 1.86 16 51 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 53 H 0.10 1.29 6.38 -2.39 -0.02 1.27 16 Total: -1.00 -73.29 409.06 1.71 -71.58 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.23 Total: 25.41 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.96 Total: 14.43 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -3.78 Total: -100.08 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -2.73 Total: -59.88 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.29 1.71 -71.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098367862.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.670 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds