Wall clock time and date at job start Sat Apr 11 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47258 * 2 1 4 4 C 1.42895 * 114.00067 * 184.79511 * 3 2 1 5 5 C 1.53001 * 109.47206 * 184.79619 * 4 3 2 6 6 C 1.50697 * 115.56178 * 327.30290 * 5 4 3 7 7 O 1.21280 * 120.00341 * 100.89501 * 6 5 4 8 8 N 1.34780 * 119.99658 * 280.89557 * 6 5 4 9 9 C 1.46921 * 120.63448 * 4.47132 * 8 6 5 10 10 C 1.53617 * 108.54628 * 126.36598 * 9 8 6 11 11 C 1.53043 * 109.23880 * 54.85509 * 10 9 8 12 12 N 1.46503 * 109.45827 * 178.48906 * 11 10 9 13 13 C 1.36938 * 119.99681 * 60.07363 * 12 11 10 14 14 H 1.08001 * 120.00112 * 319.86681 * 13 12 11 15 15 C 1.38811 * 119.99896 * 139.87695 * 13 12 11 16 16 N 1.31619 * 120.00307 * 345.20256 * 15 13 12 17 17 Si 1.86804 * 120.00115 * 165.20327 * 15 13 12 18 18 H 1.48500 * 109.46974 * 59.99771 * 17 15 13 19 19 H 1.48495 * 109.47201 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47183 * 300.00187 * 17 15 13 21 21 C 1.46503 * 120.00402 * 240.06905 * 12 11 10 22 22 C 1.52995 * 109.46961 * 84.68050 * 21 12 11 23 23 O 1.42903 * 109.46770 * 65.00361 * 22 21 12 24 24 C 1.53033 * 109.54245 * 298.50987 * 11 10 9 25 25 C 1.46934 * 120.62652 * 184.74952 * 8 6 5 26 26 C 1.53003 * 117.49985 * 112.99187 * 5 4 3 27 27 C 1.52999 * 60.00118 * 107.48703 * 26 5 4 28 28 H 1.08996 * 109.47006 * 304.89636 * 1 2 3 29 29 H 1.09004 * 109.46563 * 64.89234 * 1 2 3 30 30 H 1.08998 * 109.47187 * 184.88760 * 1 2 3 31 31 H 1.08999 * 109.47374 * 239.99280 * 2 1 3 32 32 H 1.09002 * 109.46544 * 119.99804 * 2 1 3 33 33 H 1.08998 * 109.47589 * 64.79505 * 4 3 2 34 34 H 1.09006 * 109.46887 * 304.79648 * 4 3 2 35 35 H 1.09000 * 109.58241 * 246.20221 * 9 8 6 36 36 H 1.09004 * 109.58278 * 6.62537 * 9 8 6 37 37 H 1.09000 * 109.63438 * 294.86888 * 10 9 8 38 38 H 1.08997 * 109.43579 * 174.72323 * 10 9 8 39 39 H 1.08999 * 109.46280 * 58.53897 * 11 10 9 40 40 H 0.96999 * 120.00565 * 180.02562 * 16 15 13 41 41 H 1.08995 * 109.47120 * 204.68514 * 21 12 11 42 42 H 1.09000 * 109.46710 * 324.68436 * 21 12 11 43 43 H 1.09005 * 109.47067 * 185.00046 * 22 21 12 44 44 H 1.08998 * 109.47408 * 305.00551 * 22 21 12 45 45 H 0.96699 * 113.99670 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.50179 * 301.41978 * 24 11 10 47 47 H 1.09003 * 109.50190 * 181.31525 * 24 11 10 48 48 H 1.09001 * 109.58521 * 353.37627 * 25 8 6 49 49 H 1.09000 * 109.58463 * 113.79860 * 25 8 6 50 50 H 1.08999 * 117.50050 * 214.98476 * 26 5 4 51 51 H 1.09001 * 117.49320 * 359.97438 * 26 5 4 52 52 H 1.08997 * 117.49950 * 252.51135 * 27 26 5 53 53 H 1.09001 * 117.49441 * 107.48772 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4266 1.4616 -0.1091 5 6 3.8314 2.9313 0.0210 6 6 2.8421 3.9290 -0.5238 7 8 2.1031 4.5245 0.2312 8 7 2.7785 4.1594 -1.8502 9 6 3.5971 3.3767 -2.7862 10 6 2.6741 2.7721 -3.8549 11 6 1.8640 3.8913 -4.5132 12 7 1.0081 3.3243 -5.5584 13 6 0.0680 2.3819 -5.2370 14 1 0.3013 1.6093 -4.5193 15 6 -1.1846 2.4194 -5.8339 16 7 -1.5765 3.5006 -6.4741 17 14 -2.3144 0.9354 -5.7285 18 1 -2.6047 0.6346 -4.3036 19 1 -3.5840 1.2282 -6.4408 20 1 -1.6525 -0.2361 -6.3568 21 6 1.1578 3.7656 -6.9473 22 6 2.2730 2.9628 -7.6201 23 8 1.8892 1.5885 -7.6994 24 6 0.9937 4.5808 -3.4601 25 6 1.8936 5.2022 -2.3873 26 6 4.6338 3.3361 1.2593 27 6 5.3183 3.2685 -0.1074 28 1 -0.3633 0.5879 0.8428 29 1 -0.3632 0.4361 -0.9306 30 1 -0.3633 -1.0239 0.0876 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7485 1.0805 -1.0783 34 1 3.8997 0.8827 0.6842 35 1 4.3326 4.0269 -3.2599 36 1 4.1060 2.5780 -2.2466 37 1 1.9955 2.0566 -3.3905 38 1 3.2760 2.2662 -4.6098 39 1 2.5435 4.6193 -4.9562 40 1 -2.4520 3.5270 -6.8909 41 1 0.2217 3.6060 -7.4822 42 1 1.4110 4.8256 -6.9664 43 1 2.4448 3.3505 -8.6242 44 1 3.1882 3.0512 -7.0348 45 1 2.5502 1.0190 -8.1162 46 1 0.3310 3.8484 -2.9993 47 1 0.3997 5.3624 -3.9339 48 1 1.2782 5.6083 -1.5844 49 1 2.4931 5.9981 -2.8292 50 1 4.4460 4.3240 1.6799 51 1 4.8729 2.5554 1.9814 52 1 6.0080 2.4433 -0.2846 53 1 5.5809 4.2120 -0.5859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098410063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:54 Heat of formation + Delta-G solvation = -102.776999 kcal Electronic energy + Delta-G solvation = -32729.690560 eV Core-core repulsion = 28602.271556 eV Total energy + Delta-G solvation = -4127.419004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.53227 -39.44544 -38.77850 -37.66918 -37.29176 -36.18060 -33.71168 -32.32936 -32.12461 -31.81892 -29.40780 -28.03052 -26.71959 -25.22179 -24.37903 -23.77928 -23.33169 -23.15247 -22.03501 -21.20679 -19.69369 -18.45893 -18.14305 -17.91914 -17.37096 -17.13323 -16.82912 -16.72846 -16.42305 -16.05448 -15.58665 -15.47179 -15.23434 -14.96415 -14.77775 -14.36001 -14.34552 -14.30660 -13.98095 -13.66567 -13.44165 -13.27205 -13.12143 -13.01624 -12.96925 -12.72479 -12.63591 -12.53994 -12.39165 -12.34584 -12.15369 -12.07157 -11.81939 -11.62070 -11.56049 -11.46989 -11.22774 -11.11755 -10.67011 -10.57284 -10.45232 -10.39118 -9.56695 -8.38014 -7.71350 -5.34148 1.42477 1.44400 1.49768 1.64238 2.05347 2.49311 2.55282 2.85103 3.38950 3.49087 3.61765 3.75220 3.87047 3.89969 3.96290 4.05043 4.10748 4.18755 4.24509 4.27751 4.33980 4.44032 4.45298 4.46242 4.55518 4.60880 4.65619 4.72817 4.74080 4.75578 4.79032 4.84439 4.88619 4.92512 4.95720 4.97619 4.98597 5.12967 5.15320 5.18474 5.21085 5.25224 5.49682 5.63391 5.69988 5.75947 5.90018 6.28379 6.52964 6.59270 7.25234 7.25362 7.32747 7.99730 8.48762 9.24904 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004273 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.968653 B = 6551.846899 C = 7607.722039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.059 3.941 3 O -0.416 6.416 4 C 0.104 3.896 5 C -0.181 4.181 6 C 0.556 3.444 7 O -0.593 6.593 8 N -0.600 5.600 9 C 0.118 3.882 10 C -0.124 4.124 11 C 0.176 3.824 12 N -0.583 5.583 13 C -0.214 4.214 14 H 0.038 0.962 15 C -0.036 4.036 16 N -0.925 5.925 17 Si 0.941 3.059 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.281 1.281 21 C 0.138 3.862 22 C 0.070 3.930 23 O -0.577 6.577 24 C -0.118 4.118 25 C 0.122 3.878 26 C -0.144 4.144 27 C -0.123 4.123 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.244 0.756 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.374 0.626 46 H 0.024 0.976 47 H 0.047 0.953 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.126 0.874 52 H 0.140 0.860 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.691 -4.090 8.943 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.336 6.336 4 C 0.028 3.972 5 C -0.184 4.184 6 C 0.346 3.654 7 O -0.473 6.473 8 N -0.332 5.332 9 C -0.004 4.004 10 C -0.164 4.164 11 C 0.069 3.931 12 N -0.303 5.303 13 C -0.345 4.345 14 H 0.056 0.944 15 C -0.231 4.231 16 N -0.571 5.571 17 Si 0.771 3.229 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.208 1.208 21 C 0.012 3.988 22 C -0.010 4.010 23 O -0.382 6.382 24 C -0.159 4.159 25 C -0.002 4.002 26 C -0.181 4.181 27 C -0.160 4.160 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.221 0.779 46 H 0.043 0.957 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.108 0.892 50 H 0.103 0.897 51 H 0.144 0.856 52 H 0.158 0.842 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.476 -3.343 9.527 21.055 hybrid contribution -1.217 -0.947 -0.569 1.644 sum 17.259 -4.291 8.959 19.913 Atomic orbital electron populations 1.21769 0.94769 1.03118 1.01427 1.22548 0.95105 0.82837 1.01197 1.88005 1.22482 1.28050 1.95099 1.22101 0.81373 0.91833 1.01920 1.21338 0.94544 0.94357 1.08150 1.19912 0.82724 0.81285 0.81512 1.90611 1.44832 1.53039 1.58837 1.48113 1.42651 1.36558 1.05847 1.22038 0.92514 0.95750 0.90133 1.22215 0.97917 0.98662 0.97632 1.20497 0.91114 0.93202 0.88267 1.43838 1.39198 1.45692 1.01586 1.18679 0.90623 1.03275 1.21951 0.94421 1.25662 0.97830 0.97966 1.01669 1.70003 1.19261 1.27245 1.40557 0.85755 0.78554 0.81412 0.77158 1.21168 1.22159 1.20764 1.20978 0.98204 0.93579 0.86066 1.22869 0.97861 0.82352 0.97892 1.86783 1.47589 1.19746 1.84040 1.22080 0.98127 0.99044 0.96620 1.21529 0.92655 0.90038 0.95931 1.23193 0.99926 1.03648 0.91351 1.23331 0.89180 1.05024 0.98461 0.92746 0.94804 0.88634 0.92674 0.90944 0.91368 0.89696 0.88738 0.88069 0.94869 0.90643 0.91301 0.94635 0.91871 0.93795 0.93814 0.93788 0.77950 0.95692 0.93406 0.91982 0.89242 0.89669 0.85606 0.84177 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 10.28 71.98 0.74 -3.48 16 2 C 0.06 1.46 6.66 71.98 0.48 1.94 16 3 O -0.42 -12.94 9.57 -148.98 -1.43 -14.36 16 4 C 0.10 2.26 5.79 71.98 0.42 2.68 16 5 C -0.18 -4.16 1.20 -52.93 -0.06 -4.22 16 6 C 0.56 18.60 6.11 87.66 0.54 19.14 16 7 O -0.59 -25.47 16.40 -3.03 -0.05 -25.52 16 8 N -0.60 -18.74 2.97 -818.06 -2.43 -21.17 16 9 C 0.12 2.90 6.04 86.51 0.52 3.42 16 10 C -0.12 -4.11 5.31 30.82 0.16 -3.95 16 11 C 0.18 6.81 2.59 45.02 0.12 6.93 16 12 N -0.58 -27.74 2.31 -677.90 -1.57 -29.30 16 13 C -0.21 -11.78 8.00 84.03 0.67 -11.10 16 14 H 0.04 2.18 6.89 -2.91 -0.02 2.16 16 15 C -0.04 -2.06 5.05 84.86 0.43 -1.63 16 16 N -0.92 -55.43 11.32 21.65 0.25 -55.18 16 17 Si 0.94 47.64 29.58 68.60 2.03 49.67 16 18 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 19 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 20 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 21 C 0.14 6.25 5.54 86.38 0.48 6.73 16 22 C 0.07 2.50 7.39 71.98 0.53 3.04 16 23 O -0.58 -22.65 13.39 -148.98 -1.99 -24.65 16 24 C -0.12 -4.96 5.30 30.67 0.16 -4.79 16 25 C 0.12 4.19 6.44 86.36 0.56 4.75 16 26 C -0.14 -2.56 9.79 30.60 0.30 -2.26 16 27 C -0.12 -1.65 8.91 30.60 0.27 -1.37 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.30 6.89 -2.39 -0.02 1.28 16 34 H 0.09 1.31 7.89 -2.38 -0.02 1.29 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 2.02 4.38 -2.38 -0.01 2.01 16 37 H 0.03 1.34 7.08 -2.39 -0.02 1.32 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.35 7.86 -2.39 -0.02 2.34 16 40 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.06 3.46 5.53 -2.39 -0.01 3.45 16 42 H 0.04 1.85 8.03 -2.39 -0.02 1.83 16 43 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.37 10.09 9.12 -74.06 -0.68 9.42 16 46 H 0.02 1.24 7.71 -2.39 -0.02 1.22 16 47 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.06 2.40 7.00 -2.39 -0.02 2.39 16 49 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.13 1.62 8.04 -2.39 -0.02 1.60 16 52 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -80.40 415.97 1.34 -79.06 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.21 Total: 25.64 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.31 Total: 15.81 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.75 Total: -105.66 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -3.47 Total: -64.52 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -80.40 1.34 -79.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098410063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.715 kcal (2) G-P(sol) polarization free energy of solvation -80.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds