Wall clock time and date at job start Sat Apr 11 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42901 * 109.47367 * 2 1 4 4 C 1.42905 * 114.00231 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46870 * 329.99884 * 4 3 2 6 6 C 1.53000 * 109.47010 * 89.99774 * 4 3 2 7 7 C 1.50698 * 109.46866 * 210.00328 * 4 3 2 8 8 O 1.21283 * 120.00216 * 354.99521 * 7 4 3 9 9 N 1.34777 * 119.99708 * 174.99994 * 7 4 3 10 10 C 1.46499 * 119.99761 * 179.97438 * 9 7 4 11 11 H 1.08998 * 109.52905 * 34.91233 * 10 9 7 12 12 C 1.53167 * 109.48018 * 274.83120 * 10 9 7 13 13 N 1.46927 * 108.80560 * 185.39097 * 12 10 9 14 14 C 1.36936 * 120.64288 * 233.60474 * 13 12 10 15 15 H 1.08006 * 119.99930 * 27.64877 * 14 13 12 16 16 C 1.38815 * 120.00528 * 207.65571 * 14 13 12 17 17 N 1.31621 * 119.99787 * 17.33490 * 16 14 13 18 18 Si 1.86800 * 120.00144 * 197.34210 * 16 14 13 19 19 H 1.48500 * 109.47323 * 59.99584 * 18 16 14 20 20 H 1.48500 * 109.46888 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46953 * 299.99353 * 18 16 14 22 22 C 1.46945 * 118.72076 * 53.63132 * 13 12 10 23 23 C 1.53092 * 108.76022 * 306.49794 * 22 13 12 24 24 C 1.53072 * 109.53054 * 174.71058 * 23 22 13 25 25 C 1.53116 * 109.16364 * 176.70829 * 24 23 22 26 26 O 1.42909 * 109.40783 * 302.52633 * 25 24 23 27 27 C 1.42912 * 114.12599 * 61.18814 * 26 25 24 28 28 C 1.53091 * 109.47177 * 294.42580 * 23 22 13 29 29 C 1.52945 * 109.48249 * 54.53048 * 23 22 13 30 30 H 1.08996 * 109.47241 * 59.99810 * 1 2 3 31 31 H 1.09002 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47154 * 300.00028 * 1 2 3 33 33 H 1.09001 * 109.47154 * 239.99972 * 2 1 3 34 34 H 1.09004 * 109.47262 * 120.00549 * 2 1 3 35 35 H 1.08992 * 109.47549 * 300.00174 * 6 4 3 36 36 H 1.09003 * 109.46694 * 60.00279 * 6 4 3 37 37 H 1.08996 * 109.46630 * 179.97438 * 6 4 3 38 38 H 0.97000 * 120.00260 * 359.97438 * 9 7 4 39 39 H 1.09003 * 109.57702 * 65.60103 * 12 10 9 40 40 H 1.08993 * 109.69549 * 305.25673 * 12 10 9 41 41 H 0.97001 * 119.99847 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.59391 * 186.70854 * 22 13 12 43 43 H 1.09007 * 109.58903 * 66.27884 * 22 13 12 44 44 H 1.08993 * 109.51929 * 296.60954 * 24 23 22 45 45 H 1.08999 * 109.52677 * 56.80374 * 24 23 22 46 46 H 1.09003 * 109.48296 * 182.54657 * 25 24 23 47 47 H 1.09000 * 109.48411 * 62.50726 * 25 24 23 48 48 H 1.08999 * 109.48500 * 178.81885 * 27 26 25 49 49 H 1.09005 * 109.48356 * 58.77029 * 27 26 25 50 50 H 1.08990 * 109.52662 * 303.14005 * 28 23 22 51 51 H 1.09008 * 109.52178 * 63.26618 * 28 23 22 52 52 H 1.08993 * 109.46122 * 58.76835 * 29 23 22 53 53 H 1.09000 * 109.45647 * 178.74513 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6015 0.5130 6 6 3.9387 1.5005 -1.4433 7 6 3.8347 2.7262 0.7099 8 8 2.9864 3.5046 1.0913 9 7 5.1387 2.9937 0.9214 10 6 5.5313 4.2248 1.6116 11 1 4.7922 4.4658 2.3756 12 6 5.6149 5.3726 0.6009 13 7 6.1335 6.5667 1.2820 14 6 5.4507 7.7525 1.2284 15 1 4.3783 7.7529 1.1002 16 6 6.1369 8.9541 1.3387 17 7 7.4395 8.9876 1.1530 18 14 5.2117 10.5237 1.7510 19 1 4.5406 10.3716 3.0670 20 1 6.1662 11.6597 1.8109 21 1 4.1928 10.7873 0.7033 22 6 7.3992 6.4641 2.0214 23 6 7.2968 5.3030 3.0140 24 6 8.6492 5.0959 3.7005 25 6 8.5160 3.9884 4.7494 26 8 7.4963 4.3417 5.6862 27 6 6.1997 4.4996 5.1063 28 6 6.2393 5.6281 4.0723 29 6 6.8997 4.0280 2.2685 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6465 0.5848 -1.9571 36 1 3.5059 2.3592 -1.9568 37 1 5.0252 1.5870 -1.4437 38 1 5.8171 2.3710 0.6166 39 1 4.6220 5.5815 0.2025 40 1 6.2847 5.0968 -0.2136 41 1 7.9191 9.8272 1.2304 42 1 7.5827 7.3924 2.5625 43 1 8.2158 6.2776 1.3239 44 1 9.3937 4.8073 2.9586 45 1 8.9571 6.0220 4.1858 46 1 9.4645 3.8675 5.2729 47 1 8.2499 3.0525 4.2581 48 1 5.4800 4.7467 5.8867 49 1 5.9036 3.5705 4.6192 50 1 6.4943 6.5657 4.5660 51 1 5.2635 5.7210 3.5955 52 1 7.6427 3.8095 1.5015 53 1 6.8487 3.1970 2.9720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099565705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:59 Heat of formation + Delta-G solvation = -113.189701 kcal Electronic energy + Delta-G solvation = -32342.970095 eV Core-core repulsion = 28215.099562 eV Total energy + Delta-G solvation = -4127.870532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.33154 -39.53456 -37.88223 -36.79480 -34.40560 -33.53169 -32.67691 -31.29711 -30.70168 -30.34460 -28.88855 -27.14856 -25.43857 -24.66314 -23.27513 -23.01706 -22.90003 -21.77513 -20.50275 -19.95185 -18.15185 -17.19300 -16.95084 -16.68077 -16.08242 -15.87993 -15.68536 -15.18603 -14.89332 -14.73272 -14.46894 -14.20235 -13.85767 -13.72190 -13.54656 -13.45714 -13.30472 -13.03657 -12.69738 -12.51426 -12.47578 -12.33844 -12.14407 -11.88243 -11.57751 -11.40736 -11.37183 -11.23693 -11.01608 -10.89542 -10.78875 -10.74454 -10.42419 -10.20815 -10.04163 -9.98696 -9.91139 -9.71742 -9.61394 -9.26602 -8.91989 -8.85079 -8.39825 -6.68150 -5.79396 -3.21185 2.79030 2.92267 3.41605 3.46357 3.49439 3.82689 4.17561 4.50476 4.60827 4.74779 4.78963 4.90519 4.99211 5.01433 5.10715 5.17988 5.26212 5.26540 5.36556 5.41970 5.44912 5.50167 5.51483 5.52629 5.58426 5.68247 5.70094 5.76955 5.83786 5.91085 5.92900 5.93982 6.00948 6.15480 6.16780 6.22255 6.37454 6.51205 6.61091 6.66504 6.75066 6.82785 6.91712 6.94628 7.01469 7.28812 7.49743 7.61460 7.71979 7.83052 8.41506 8.47633 9.21060 9.83115 10.38376 11.29204 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.003795 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.975975 B = 7375.540473 C = 9110.006638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.072 3.928 5 H 0.082 0.918 6 C -0.170 4.170 7 C 0.510 3.490 8 O -0.514 6.514 9 N -0.722 5.722 10 C 0.126 3.874 11 H 0.090 0.910 12 C 0.141 3.859 13 N -0.583 5.583 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.183 3.817 23 C -0.077 4.077 24 C -0.140 4.140 25 C 0.062 3.938 26 O -0.388 6.388 27 C 0.059 3.941 28 C -0.134 4.134 29 C -0.109 4.109 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.393 0.607 39 H 0.058 0.942 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.092 0.908 43 H 0.019 0.981 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.045 0.955 48 H 0.085 0.915 49 H 0.044 0.956 50 H 0.068 0.932 51 H 0.084 0.916 52 H 0.061 0.939 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -19.931 0.170 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.010 3.990 5 H 0.099 0.901 6 C -0.227 4.227 7 C 0.294 3.706 8 O -0.388 6.388 9 N -0.374 5.374 10 C 0.021 3.979 11 H 0.108 0.892 12 C 0.013 3.987 13 N -0.305 5.305 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.209 1.209 22 C 0.057 3.943 23 C -0.080 4.080 24 C -0.178 4.178 25 C -0.015 4.015 26 O -0.307 6.307 27 C -0.017 4.017 28 C -0.172 4.172 29 C -0.147 4.147 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.226 0.774 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.037 0.963 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.103 0.897 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.103 0.897 52 H 0.079 0.921 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.269 -18.983 0.632 19.128 hybrid contribution 0.129 0.213 -0.398 0.469 sum -2.139 -18.770 0.234 18.893 Atomic orbital electron populations 1.21724 0.93494 1.02060 1.03542 1.22570 0.95971 0.83782 0.99872 1.88088 1.18509 1.25976 1.94915 1.21901 0.83619 0.96735 0.96736 0.90066 1.22222 1.01750 1.03643 0.95129 1.20280 0.82965 0.87473 0.79882 1.90754 1.50071 1.48582 1.49352 1.46068 1.06547 1.24367 1.60467 1.21807 0.96371 0.83690 0.96068 0.89167 1.21192 0.98142 0.87056 0.92270 1.43934 1.24159 1.05755 1.56674 1.19154 0.90544 0.82876 1.45444 0.91604 1.24986 0.95777 0.97623 1.00920 1.70018 1.06871 1.25758 1.52104 0.86388 0.78917 0.82856 0.78786 1.20917 1.21674 1.20856 1.20858 0.87040 0.95306 0.91097 1.21174 0.93596 0.96926 0.96293 1.22128 0.97830 0.99767 0.98100 1.22565 0.91197 0.96442 0.91261 1.87864 1.17671 1.90604 1.34607 1.22674 0.84380 0.97891 0.96792 1.22119 1.00965 0.98244 0.95846 1.21812 0.96012 0.97987 0.98915 0.91711 0.91154 0.91604 0.93349 0.93393 0.91518 0.90851 0.90877 0.77375 0.92371 0.96514 0.93608 0.89006 0.96295 0.91316 0.90873 0.89731 0.93699 0.89666 0.93792 0.91306 0.89742 0.92056 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.87 16 2 C 0.05 0.50 6.47 37.15 0.24 0.74 16 3 O -0.36 -4.78 9.53 -55.09 -0.52 -5.31 16 4 C 0.07 0.82 3.13 -27.88 -0.09 0.73 16 5 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 6 C -0.17 -1.58 9.48 37.16 0.35 -1.23 16 7 C 0.51 7.88 7.15 -10.99 -0.08 7.80 16 8 O -0.51 -10.65 16.17 -14.31 -0.23 -10.88 16 9 N -0.72 -9.86 5.04 -53.69 -0.27 -10.13 16 10 C 0.13 2.14 2.27 -67.81 -0.15 1.99 16 11 H 0.09 1.78 5.71 -51.93 -0.30 1.49 16 12 C 0.14 2.98 6.09 -3.72 -0.02 2.95 16 13 N -0.58 -14.15 2.50 -172.38 -0.43 -14.58 16 14 C -0.25 -6.86 9.59 -15.06 -0.14 -7.01 16 15 H 0.07 1.84 7.89 -52.48 -0.41 1.42 16 16 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 17 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 18 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.18 4.10 3.99 -3.75 -0.01 4.08 16 23 C -0.08 -1.35 0.51 -154.41 -0.08 -1.43 16 24 C -0.14 -2.12 4.92 -26.63 -0.13 -2.25 16 25 C 0.06 0.83 6.57 37.22 0.24 1.08 16 26 O -0.39 -6.14 10.76 -35.23 -0.38 -6.51 16 27 C 0.06 0.91 6.57 37.21 0.24 1.15 16 28 C -0.13 -2.42 4.47 -26.63 -0.12 -2.54 16 29 C -0.11 -1.66 3.64 -26.73 -0.10 -1.75 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.35 7.87 -51.93 -0.41 -0.05 16 34 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 38 H 0.39 3.96 8.39 -40.82 -0.34 3.61 16 39 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 43 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.04 0.55 6.59 -51.93 -0.34 0.21 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.04 0.64 6.64 -51.93 -0.34 0.30 16 50 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.08 1.70 5.92 -51.92 -0.31 1.39 16 52 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 53 H 0.05 0.74 5.03 -51.93 -0.26 0.47 16 LS Contribution 401.81 15.07 6.06 6.06 Total: -1.00 -32.87 401.81 -9.04 -41.91 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -9.30 Total: 4.12 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 0.45 Total: 3.52 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.08 Total: -49.83 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.14 Total: -22.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.87 -9.04 -41.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099565705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.282 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds