Wall clock time and date at job start Sat Apr 11 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47287 * 2 1 4 4 C 1.42896 * 114.00124 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47058 * 29.99961 * 4 3 2 6 6 C 1.53007 * 109.47041 * 269.99816 * 4 3 2 7 7 C 1.50697 * 109.47143 * 150.00050 * 4 3 2 8 8 O 1.21281 * 120.00179 * 4.99858 * 7 4 3 9 9 N 1.34779 * 119.99994 * 184.99585 * 7 4 3 10 10 C 1.46501 * 120.00023 * 179.97438 * 9 7 4 11 11 H 1.09005 * 109.50027 * 324.93160 * 10 9 7 12 12 C 1.53197 * 109.49890 * 85.00303 * 10 9 7 13 13 N 1.46919 * 108.76921 * 174.66888 * 12 10 9 14 14 C 1.36936 * 120.63174 * 126.33272 * 13 12 10 15 15 H 1.08002 * 119.99963 * 207.47731 * 14 13 12 16 16 C 1.38817 * 120.00135 * 27.47432 * 14 13 12 17 17 N 1.31613 * 119.99439 * 17.82541 * 16 14 13 18 18 Si 1.86800 * 120.00188 * 197.82238 * 16 14 13 19 19 H 1.48501 * 109.47011 * 265.35806 * 18 16 14 20 20 H 1.48503 * 109.47065 * 25.35949 * 18 16 14 21 21 H 1.48498 * 109.46879 * 145.35887 * 18 16 14 22 22 C 1.46937 * 118.73929 * 306.60170 * 13 12 10 23 23 C 1.52619 * 109.06261 * 53.12513 * 22 13 12 24 24 C 1.53080 * 109.36769 * 65.99705 * 23 22 13 25 25 C 1.53108 * 109.16941 * 176.71067 * 24 23 22 26 26 O 1.42905 * 109.41556 * 302.52495 * 25 24 23 27 27 C 1.42909 * 114.11932 * 61.18148 * 26 25 24 28 28 C 1.53093 * 109.56376 * 185.65366 * 23 22 13 29 29 C 1.52938 * 109.58224 * 305.86819 * 23 22 13 30 30 H 1.08999 * 109.46722 * 60.00174 * 1 2 3 31 31 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47425 * 300.00483 * 1 2 3 33 33 H 1.09004 * 109.47315 * 239.99648 * 2 1 3 34 34 H 1.09007 * 109.46659 * 120.00166 * 2 1 3 35 35 H 1.09001 * 109.46710 * 60.00350 * 6 4 3 36 36 H 1.09000 * 109.46974 * 179.97438 * 6 4 3 37 37 H 1.08991 * 109.47218 * 300.00515 * 6 4 3 38 38 H 0.96995 * 119.99872 * 0.02562 * 9 7 4 39 39 H 1.08999 * 109.58283 * 54.88728 * 12 10 9 40 40 H 1.08998 * 109.58960 * 294.45854 * 12 10 9 41 41 H 0.97003 * 120.00061 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.58550 * 172.97709 * 22 13 12 43 43 H 1.09002 * 109.57792 * 293.38445 * 22 13 12 44 44 H 1.08994 * 109.52114 * 296.62360 * 24 23 22 45 45 H 1.08999 * 109.52010 * 56.80479 * 24 23 22 46 46 H 1.08998 * 109.48070 * 182.54144 * 25 24 23 47 47 H 1.09005 * 109.48190 * 62.50883 * 25 24 23 48 48 H 1.09002 * 109.48332 * 178.82611 * 27 26 25 49 49 H 1.09001 * 109.48799 * 58.78124 * 27 26 25 50 50 H 1.08995 * 109.52625 * 303.29422 * 28 23 22 51 51 H 1.09005 * 109.51782 * 63.48067 * 28 23 22 52 52 H 1.08997 * 109.45606 * 300.96071 * 29 23 22 53 53 H 1.09001 * 109.43532 * 181.00478 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6014 -0.5129 6 6 3.9387 1.5006 1.4434 7 6 3.8348 2.7262 -0.7098 8 8 2.9865 3.5046 -1.0913 9 7 5.1388 2.9937 -0.9212 10 6 5.5314 4.2243 -1.6123 11 1 4.7935 4.4626 -2.3785 12 6 5.6107 5.3744 -0.6034 13 7 6.1280 6.5678 -1.2866 14 6 5.4420 7.7519 -1.2379 15 1 5.5411 8.4668 -2.0414 16 6 4.6193 8.0335 -0.1559 17 7 4.7544 7.3594 0.9664 18 14 3.3206 9.3693 -0.2927 19 1 3.8665 10.6461 0.2335 20 1 2.9383 9.5439 -1.7170 21 1 2.1247 8.9795 0.4967 22 6 7.3924 6.4650 -2.0280 23 6 7.3000 5.3023 -3.0123 24 6 6.2484 5.6216 -4.0780 25 6 6.2175 4.4900 -5.1088 26 8 7.5178 4.3321 -5.6800 27 6 8.5322 3.9837 -4.7356 28 6 8.6569 5.0954 -3.6902 29 6 6.9018 4.0286 -2.2651 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8898 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6465 0.5847 1.9572 36 1 5.0253 1.5862 1.4438 37 1 3.5060 2.3591 1.9569 38 1 5.8171 2.3711 -0.6164 39 1 6.2812 5.1002 0.2111 40 1 4.6168 5.5821 -0.2071 41 1 4.1798 7.5564 1.7227 42 1 7.5718 7.3909 -2.5745 43 1 8.2110 6.2854 -1.3311 44 1 5.2694 5.7129 -3.6077 45 1 6.5044 6.5584 -4.5730 46 1 5.5024 4.7334 -5.8945 47 1 5.9196 3.5618 -4.6208 48 1 9.4841 3.8624 -5.2527 49 1 8.2645 3.0492 -4.2425 50 1 8.9657 6.0203 -4.1772 51 1 9.3978 4.8112 -2.9429 52 1 7.6429 3.8124 -1.4956 53 1 6.8539 3.1962 -2.9672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099565708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:10 Heat of formation + Delta-G solvation = -136.097781 kcal Electronic energy + Delta-G solvation = -32541.071974 eV Core-core repulsion = 28412.208073 eV Total energy + Delta-G solvation = -4128.863901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.68002 -40.72326 -38.91280 -38.20451 -35.83881 -35.35073 -33.52503 -32.78857 -32.00955 -31.47354 -30.33241 -28.52557 -27.31656 -25.66957 -24.60759 -24.53109 -23.72239 -23.11394 -21.96109 -21.34137 -19.40805 -18.75082 -18.14296 -18.06182 -17.24624 -17.02475 -16.79954 -16.65764 -16.38250 -16.00562 -15.92531 -15.51407 -15.33226 -15.10464 -15.07035 -14.76970 -14.25812 -14.23800 -14.06741 -13.86610 -13.39321 -13.30164 -13.18584 -13.02011 -12.89911 -12.84539 -12.78387 -12.72435 -12.35360 -12.30513 -12.17239 -12.15041 -12.06045 -12.02108 -11.73855 -11.69369 -11.10264 -10.99931 -10.87792 -10.56520 -10.40835 -10.27451 -10.09242 -8.68473 -7.91451 -5.34544 1.36694 1.42224 1.49326 1.62433 1.91727 2.45962 2.93855 3.04033 3.25633 3.58508 3.66432 3.75222 3.87575 3.90882 3.97499 4.02403 4.18381 4.20132 4.21682 4.30994 4.32748 4.34786 4.39121 4.48430 4.56244 4.58940 4.61247 4.76917 4.77360 4.82735 4.87323 4.87906 4.92418 4.95382 4.99976 5.01176 5.13294 5.18872 5.21677 5.25958 5.28519 5.34738 5.42956 5.50716 5.55144 5.59820 5.77490 6.16891 6.33448 6.34718 6.65938 7.10649 7.34980 7.84137 8.32129 9.13181 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007652 B = 0.004755 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3658.518089 B = 5887.277169 C = 8392.714886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.398 6.398 4 C 0.079 3.921 5 H 0.126 0.874 6 C -0.164 4.164 7 C 0.500 3.500 8 O -0.579 6.579 9 N -0.704 5.704 10 C 0.133 3.867 11 H 0.055 0.945 12 C 0.180 3.820 13 N -0.600 5.600 14 C -0.258 4.258 15 H 0.064 0.936 16 C -0.046 4.046 17 N -0.927 5.927 18 Si 0.953 3.047 19 H -0.278 1.278 20 H -0.272 1.272 21 H -0.300 1.300 22 C 0.154 3.846 23 C -0.063 4.063 24 C -0.134 4.134 25 C 0.069 3.931 26 O -0.398 6.398 27 C 0.059 3.941 28 C -0.134 4.134 29 C -0.098 4.098 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.415 0.585 39 H 0.001 0.999 40 H 0.040 0.960 41 H 0.246 0.754 42 H 0.048 0.952 43 H 0.023 0.977 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.093 0.907 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.091 0.909 52 H 0.080 0.920 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 -20.050 -5.362 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.318 6.318 4 C 0.018 3.982 5 H 0.143 0.857 6 C -0.222 4.222 7 C 0.287 3.713 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.026 3.974 11 H 0.074 0.926 12 C 0.053 3.947 13 N -0.323 5.323 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.242 4.242 17 N -0.573 5.573 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.197 1.197 21 H -0.227 1.227 22 C 0.029 3.971 23 C -0.066 4.066 24 C -0.172 4.172 25 C -0.008 4.008 26 O -0.317 6.317 27 C -0.018 4.018 28 C -0.172 4.172 29 C -0.136 4.136 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.252 0.748 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.131 0.869 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.099 0.901 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.965 -19.270 -5.686 20.696 hybrid contribution -0.858 1.047 0.974 1.667 sum 4.107 -18.224 -4.712 19.266 Atomic orbital electron populations 1.21781 0.93490 1.03501 1.02145 1.22858 0.96153 0.82174 1.01744 1.88070 1.19645 1.28890 1.95163 1.21979 0.83360 0.95308 0.97526 0.85682 1.22220 1.02711 1.03526 0.93714 1.21268 0.82726 0.88375 0.78933 1.90731 1.51925 1.50980 1.52039 1.45790 1.06819 1.23468 1.59669 1.21522 0.96939 0.84201 0.94690 0.92646 1.20775 0.97635 0.84876 0.91402 1.44076 1.21826 1.06341 1.60028 1.19394 1.21989 0.96325 1.01110 0.91788 1.25648 1.03159 1.00771 0.94586 1.70149 1.40017 1.45032 1.02123 0.85474 0.79266 0.79522 0.77592 1.20399 1.19730 1.22680 1.21015 0.87117 0.96438 0.92506 1.20789 0.95734 0.95341 0.94703 1.22061 0.99546 0.99038 0.96512 1.22532 0.84930 0.97015 0.96290 1.87874 1.17737 1.90738 1.35368 1.22788 0.91934 0.96299 0.90732 1.22133 0.95657 1.00509 0.98951 1.21750 0.94503 0.97771 0.99572 0.93392 0.88141 0.92806 0.91762 0.90918 0.88523 0.88932 0.94377 0.74827 0.98081 0.94118 0.94515 0.93380 0.95934 0.93023 0.92607 0.88934 0.92785 0.86924 0.91828 0.91402 0.89003 0.90122 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 10.28 71.98 0.74 -2.03 16 2 C 0.05 0.88 6.47 71.98 0.47 1.35 16 3 O -0.40 -11.99 9.53 -129.99 -1.24 -13.22 16 4 C 0.08 2.00 3.13 29.85 0.09 2.09 16 5 H 0.13 1.99 7.79 -2.39 -0.02 1.97 16 6 C -0.16 -3.49 9.48 71.98 0.68 -2.80 16 7 C 0.50 17.97 7.14 87.66 0.63 18.60 16 8 O -0.58 -28.67 16.17 15.96 0.26 -28.41 16 9 N -0.70 -21.49 5.04 -442.13 -2.23 -23.72 16 10 C 0.13 4.98 2.27 45.08 0.10 5.08 16 11 H 0.06 2.47 5.73 -2.38 -0.01 2.46 16 12 C 0.18 8.89 4.89 86.37 0.42 9.31 16 13 N -0.60 -30.27 2.52 -700.17 -1.77 -32.04 16 14 C -0.26 -14.75 9.59 84.03 0.81 -13.95 16 15 H 0.06 3.59 7.89 -2.91 -0.02 3.57 16 16 C -0.05 -2.72 4.90 84.86 0.42 -2.30 16 17 N -0.93 -57.90 11.20 21.65 0.24 -57.65 16 18 Si 0.95 48.50 29.59 68.60 2.03 50.53 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 22 C 0.15 6.15 5.15 86.17 0.44 6.59 16 23 C -0.06 -1.93 0.51 -52.27 -0.03 -1.96 16 24 C -0.13 -4.45 4.47 30.66 0.14 -4.31 16 25 C 0.07 1.88 6.57 72.02 0.47 2.35 16 26 O -0.40 -10.34 10.76 -148.98 -1.60 -11.94 16 27 C 0.06 1.16 6.57 72.02 0.47 1.63 16 28 C -0.13 -3.06 4.92 30.66 0.15 -2.91 16 29 C -0.10 -2.74 3.63 30.59 0.11 -2.63 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 0.99 8.09 -2.38 -0.02 0.97 16 34 H 0.07 1.01 7.87 -2.38 -0.02 0.99 16 35 H 0.10 1.45 7.87 -2.39 -0.02 1.43 16 36 H 0.09 1.56 7.93 -2.39 -0.02 1.54 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.41 8.59 8.39 -92.71 -0.78 7.81 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.04 2.47 6.03 -2.39 -0.01 2.45 16 41 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 2.12 5.94 -2.39 -0.01 2.10 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.05 1.40 6.64 -2.38 -0.02 1.38 16 48 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.06 1.09 6.59 -2.39 -0.02 1.07 16 50 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 51 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 52 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.08 1.93 5.03 -2.39 -0.01 1.91 16 Total: -1.00 -82.40 401.82 1.92 -80.47 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.12 Total: 21.86 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 6.12 Total: 14.12 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -3.76 Total: -113.41 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.58 Total: -53.58 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -82.40 1.92 -80.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099565708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.626 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds