Wall clock time and date at job start Sat Apr 11 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47282 * 2 1 4 4 C 1.42903 * 113.99862 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47002 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47177 * 179.97438 * 5 4 3 7 7 O 1.21291 * 120.00047 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00580 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00602 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.49412 * 35.06856 * 9 8 6 11 11 C 1.53187 * 109.49948 * 275.00004 * 9 8 6 12 12 N 1.46926 * 108.79301 * 185.36196 * 11 9 8 13 13 C 1.36939 * 120.64131 * 233.68983 * 12 11 9 14 14 H 1.08004 * 119.99258 * 151.83522 * 13 12 11 15 15 C 1.38801 * 120.00491 * 331.83696 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.05834 * 15 13 12 17 17 Si 1.86796 * 120.00422 * 163.05359 * 15 13 12 18 18 H 1.48506 * 109.46910 * 59.99740 * 17 15 13 19 19 H 1.48493 * 109.47698 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47233 * 300.00505 * 17 15 13 21 21 C 1.46940 * 118.71364 * 53.67284 * 12 11 9 22 22 C 1.53107 * 108.78359 * 306.49658 * 21 12 11 23 23 C 1.53080 * 109.47459 * 294.29914 * 22 21 12 24 24 C 1.53117 * 109.16268 * 297.01828 * 23 22 21 25 25 O 1.42902 * 109.40484 * 302.51854 * 24 23 22 26 26 C 1.42909 * 114.13368 * 61.17456 * 25 24 23 27 27 C 1.53081 * 109.46781 * 174.62992 * 22 21 12 28 28 C 1.52925 * 109.49732 * 54.46277 * 22 21 12 29 29 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46852 * 300.00382 * 1 2 3 31 31 H 1.09004 * 109.46742 * 59.99677 * 1 2 3 32 32 H 1.09000 * 109.46852 * 239.99618 * 2 1 3 33 33 H 1.08996 * 109.46669 * 120.00023 * 2 1 3 34 34 H 1.08997 * 109.47264 * 60.00306 * 4 3 2 35 35 H 1.08993 * 109.47370 * 299.99504 * 4 3 2 36 36 H 1.09007 * 109.47269 * 60.00362 * 5 4 3 37 37 H 1.09000 * 109.47592 * 299.99959 * 5 4 3 38 38 H 0.97005 * 119.99600 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.58337 * 305.15780 * 11 9 8 40 40 H 1.09005 * 109.58000 * 65.56976 * 11 9 8 41 41 H 0.96995 * 120.00509 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.58643 * 66.28544 * 21 12 11 43 43 H 1.08993 * 109.58840 * 186.56516 * 21 12 11 44 44 H 1.09000 * 109.52532 * 56.92400 * 23 22 21 45 45 H 1.09001 * 109.52358 * 177.11443 * 23 22 21 46 46 H 1.08990 * 109.48485 * 182.53667 * 24 23 22 47 47 H 1.09001 * 109.47707 * 62.49480 * 24 23 22 48 48 H 1.08999 * 109.48345 * 178.83859 * 26 25 24 49 49 H 1.08997 * 109.48230 * 58.79199 * 26 25 24 50 50 H 1.09003 * 109.52393 * 182.87703 * 27 22 21 51 51 H 1.09006 * 109.52192 * 303.06879 * 27 22 21 52 52 H 1.09002 * 109.45535 * 178.81066 * 28 22 21 53 53 H 1.08994 * 109.46050 * 58.86581 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9382 -0.0001 6 6 5.3278 3.0572 0.0011 7 8 6.0153 2.0579 0.0020 8 7 5.9075 4.2739 0.0013 9 6 7.3680 4.3895 0.0020 10 1 7.7972 3.5798 -0.5882 11 6 7.8870 4.3045 1.4407 12 7 9.3355 4.5505 1.4367 13 6 10.1968 3.6572 2.0158 14 1 11.2094 3.5693 1.6508 15 6 9.7683 2.8647 3.0717 16 7 8.6767 3.1845 3.7339 17 14 10.7409 1.3443 3.5531 18 1 12.1196 1.7399 3.9378 19 1 10.0785 0.6760 4.7019 20 1 10.7977 0.4080 2.4019 21 6 9.8421 5.7735 0.7988 22 6 9.2992 5.8449 -0.6310 23 6 9.8821 4.6949 -1.4563 24 6 11.4023 4.8575 -1.5414 25 8 11.7124 6.1294 -2.1143 26 6 11.2337 7.2434 -1.3578 27 6 9.7069 7.1771 -1.2655 28 6 7.7742 5.7351 -0.6041 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8341 0.9763 -0.8891 35 1 3.8334 0.9766 0.8908 36 1 3.4224 3.4223 0.8895 37 1 3.4232 3.4213 -0.8905 38 1 5.3577 5.0730 0.0010 39 1 7.3903 5.0569 2.0533 40 1 7.6861 3.3117 1.8435 41 1 8.3770 2.6305 4.4716 42 1 9.5063 6.6448 1.3610 43 1 10.9315 5.7501 0.7774 44 1 9.6437 3.7453 -0.9772 45 1 9.4570 4.7146 -2.4598 46 1 11.8181 4.0666 -2.1655 47 1 11.8310 4.7950 -0.5413 48 1 11.5283 8.1704 -1.8496 49 1 11.6602 7.2121 -0.3552 50 1 9.2780 7.2509 -2.2650 51 1 9.3430 8.0001 -0.6503 52 1 7.3869 5.8072 -1.6204 53 1 7.3624 6.5441 -0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099569493.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:16 Heat of formation + Delta-G solvation = -142.358926 kcal Electronic energy + Delta-G solvation = -31755.534448 eV Core-core repulsion = 27626.399043 eV Total energy + Delta-G solvation = -4129.135405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.56585 -40.59604 -38.98800 -38.30775 -35.83195 -35.30889 -33.56787 -32.79150 -31.94503 -31.68113 -30.48947 -28.30365 -27.35597 -25.38875 -24.58162 -23.97836 -23.69417 -23.58116 -21.70209 -21.30212 -19.39781 -18.66992 -18.35437 -17.46025 -17.38991 -17.07915 -16.90269 -16.70063 -16.57254 -16.13108 -15.95932 -15.53535 -15.36194 -15.29451 -15.14016 -14.88208 -14.54827 -14.27169 -14.11228 -13.74843 -13.48716 -13.22150 -13.07287 -13.00886 -12.95349 -12.80067 -12.69771 -12.47960 -12.36006 -12.24965 -12.13422 -12.05888 -12.04022 -12.02772 -11.84766 -11.64139 -11.09337 -10.94299 -10.84332 -10.63763 -10.54593 -10.22155 -10.06227 -8.67037 -7.89516 -5.34344 1.39165 1.44485 1.48422 1.66565 2.02301 2.47183 2.85739 3.03964 3.27412 3.63916 3.71475 3.77832 3.86919 3.91794 4.00891 4.12822 4.15469 4.21827 4.25856 4.35272 4.37351 4.40245 4.41468 4.46919 4.50544 4.55177 4.60570 4.72400 4.78171 4.81091 4.82606 4.89584 4.91078 4.91832 4.98449 5.02843 5.07277 5.13598 5.23624 5.26469 5.28828 5.34499 5.43310 5.48650 5.53310 5.61166 5.78860 6.14891 6.33493 6.35659 6.63361 7.11868 7.34651 7.84586 8.33890 9.14944 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.003410 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.948458 B = 8210.279480 C =10242.502808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.400 6.400 4 C 0.081 3.919 5 C -0.124 4.124 6 C 0.508 3.492 7 O -0.590 6.590 8 N -0.708 5.708 9 C 0.130 3.870 10 H 0.058 0.942 11 C 0.180 3.820 12 N -0.598 5.598 13 C -0.255 4.255 14 H 0.065 0.935 15 C -0.045 4.045 16 N -0.928 5.928 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.296 1.296 20 H -0.286 1.286 21 C 0.152 3.848 22 C -0.068 4.068 23 C -0.130 4.130 24 C 0.066 3.934 25 O -0.397 6.397 26 C 0.054 3.946 27 C -0.131 4.131 28 C -0.095 4.095 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.415 0.585 39 H -0.002 1.002 40 H 0.043 0.957 41 H 0.246 0.754 42 H 0.018 0.982 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.039 0.961 48 H 0.116 0.884 49 H 0.044 0.956 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.084 0.916 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 5.687 -12.322 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.320 6.320 4 C 0.004 3.996 5 C -0.164 4.164 6 C 0.296 3.704 7 O -0.471 6.471 8 N -0.359 5.359 9 C 0.024 3.976 10 H 0.076 0.924 11 C 0.053 3.947 12 N -0.321 5.321 13 C -0.385 4.385 14 H 0.083 0.917 15 C -0.241 4.241 16 N -0.574 5.574 17 Si 0.782 3.218 18 H -0.195 1.195 19 H -0.222 1.222 20 H -0.212 1.212 21 C 0.027 3.973 22 C -0.070 4.070 23 C -0.168 4.168 24 C -0.011 4.011 25 O -0.316 6.316 26 C -0.022 4.022 27 C -0.169 4.169 28 C -0.133 4.133 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.252 0.748 39 H 0.016 0.984 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.134 0.866 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.107 0.893 52 H 0.102 0.898 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.289 5.095 -12.336 16.852 hybrid contribution 0.374 -1.215 1.320 1.832 sum -9.915 3.880 -11.016 15.320 Atomic orbital electron populations 1.21749 0.91960 1.03507 1.03036 1.22698 0.96883 0.82806 1.00608 1.87765 1.20576 1.28110 1.95595 1.21990 0.80804 0.96235 1.00563 1.21398 0.89711 0.97679 1.07569 1.21036 0.91312 0.83119 0.74931 1.90736 1.66754 1.38137 1.51432 1.45868 1.07430 1.08358 1.74283 1.21528 0.79326 0.98670 0.98078 0.92426 1.20778 0.83355 0.98818 0.91733 1.44069 1.02068 1.20784 1.65158 1.19328 0.95372 1.14444 1.09397 0.91727 1.25674 0.99165 1.02964 0.96334 1.70145 1.26717 1.38839 1.21727 0.85546 0.78714 0.80593 0.76921 1.19455 1.22230 1.21227 1.21200 0.97142 0.87838 0.91149 1.20915 0.94799 0.95728 0.95558 1.22029 0.96269 0.98952 0.99567 1.22516 0.94880 0.85627 0.98074 1.87842 1.78502 1.14489 1.50739 1.22770 0.93633 0.89662 0.96160 1.22124 0.96638 0.96154 1.01942 1.21641 0.95197 0.95093 1.01326 0.89186 0.92088 0.91644 0.92727 0.93473 0.93095 0.94477 0.86555 0.85098 0.74803 0.98397 0.93850 0.94496 0.96395 0.92904 0.92820 0.91062 0.88645 0.94258 0.86635 0.93781 0.89832 0.89337 0.89788 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.91 6.66 71.98 0.48 1.39 16 3 O -0.40 -9.81 10.34 -148.98 -1.54 -11.35 16 4 C 0.08 2.18 5.23 71.98 0.38 2.56 16 5 C -0.12 -2.92 6.07 29.85 0.18 -2.74 16 6 C 0.51 16.96 7.80 87.66 0.68 17.64 16 7 O -0.59 -26.43 15.65 -3.06 -0.05 -26.47 16 8 N -0.71 -21.24 5.08 -442.14 -2.25 -23.49 16 9 C 0.13 4.81 2.27 45.08 0.10 4.92 16 10 H 0.06 2.50 5.87 -2.39 -0.01 2.49 16 11 C 0.18 8.72 4.88 86.36 0.42 9.14 16 12 N -0.60 -29.37 2.40 -699.24 -1.68 -31.05 16 13 C -0.26 -14.12 9.58 84.03 0.81 -13.32 16 14 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 15 C -0.05 -2.63 4.92 84.86 0.42 -2.21 16 16 N -0.93 -56.64 11.20 21.65 0.24 -56.40 16 17 Si 0.95 47.09 29.59 68.60 2.03 49.12 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 21 C 0.15 5.91 4.60 86.33 0.40 6.30 16 22 C -0.07 -2.04 0.52 -52.12 -0.03 -2.07 16 23 C -0.13 -4.22 4.37 30.66 0.13 -4.08 16 24 C 0.07 2.04 6.57 72.02 0.47 2.51 16 25 O -0.40 -11.48 10.76 -148.98 -1.60 -13.08 16 26 C 0.05 1.28 6.57 72.02 0.47 1.76 16 27 C -0.13 -2.96 4.92 30.66 0.15 -2.81 16 28 C -0.09 -2.67 4.19 30.59 0.13 -2.54 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 35 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.42 8.81 8.60 -92.70 -0.80 8.01 16 39 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.04 2.55 6.06 -2.38 -0.01 2.54 16 41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 2.09 4.85 -2.39 -0.01 2.08 16 44 H 0.05 2.15 6.11 -2.39 -0.01 2.13 16 45 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.04 1.37 6.48 -2.39 -0.02 1.36 16 48 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.04 1.13 6.73 -2.39 -0.02 1.11 16 50 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 52 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -74.57 403.12 1.19 -73.39 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.09 Total: 24.27 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 5.94 Total: 15.07 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -3.68 Total: -110.94 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -3.19 Total: -50.90 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -74.57 1.19 -73.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099569493.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.972 kcal (2) G-P(sol) polarization free energy of solvation -74.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds