Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46795 * 2 1 4 4 C 1.42904 * 113.99751 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46899 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47494 * 65.00214 * 5 4 3 7 7 C 1.42897 * 114.00244 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46937 * 29.99502 * 7 6 5 9 9 C 1.52999 * 109.47011 * 269.99952 * 7 6 5 10 10 C 1.50700 * 109.47373 * 149.99641 * 7 6 5 11 11 O 1.21283 * 119.99558 * 11.18546 * 10 7 6 12 12 N 1.34773 * 120.00274 * 191.18181 * 10 7 6 13 13 C 1.47218 * 126.69928 * 5.31009 * 12 10 7 14 14 C 1.53783 * 106.37322 * 211.27167 * 13 12 10 15 15 H 1.09002 * 111.85548 * 103.08418 * 14 13 12 16 16 C 1.53780 * 109.34367 * 227.55191 * 14 13 12 17 17 N 1.47217 * 106.37355 * 93.95847 * 16 14 13 18 18 C 1.36945 * 126.70194 * 211.29703 * 17 16 14 19 19 H 1.07997 * 120.00019 * 180.02562 * 18 17 16 20 20 C 1.38806 * 119.99754 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00586 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46978 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46721 * 120.00010 * 22 20 18 25 25 H 1.48494 * 109.47438 * 240.00223 * 22 20 18 26 26 C 1.47208 * 106.59747 * 31.27241 * 17 16 14 27 27 C 1.54849 * 105.31175 * 341.23417 * 14 13 12 28 28 C 1.53007 * 111.96114 * 122.68954 * 27 14 13 29 29 C 1.47216 * 126.70182 * 184.99476 * 12 10 7 30 30 H 1.08997 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47119 * 299.99461 * 1 2 3 32 32 H 1.08993 * 109.47411 * 59.99957 * 1 2 3 33 33 H 1.08999 * 109.47119 * 240.00539 * 2 1 3 34 34 H 1.08993 * 109.47411 * 120.00043 * 2 1 3 35 35 H 1.09001 * 109.47016 * 299.99885 * 4 3 2 36 36 H 1.09002 * 109.47342 * 59.99884 * 4 3 2 37 37 H 1.08998 * 109.47021 * 185.00226 * 5 4 3 38 38 H 1.08997 * 109.47143 * 305.00013 * 5 4 3 39 39 H 1.09002 * 109.47349 * 55.17330 * 9 7 6 40 40 H 1.08998 * 109.46936 * 175.17667 * 9 7 6 41 41 H 1.09002 * 109.46991 * 295.17598 * 9 7 6 42 42 H 1.08997 * 110.07273 * 330.49773 * 13 12 10 43 43 H 1.08996 * 110.06981 * 92.04604 * 13 12 10 44 44 H 1.08995 * 110.07561 * 213.18170 * 16 14 13 45 45 H 1.08998 * 110.07774 * 334.67843 * 16 14 13 46 46 H 0.97001 * 120.00734 * 179.97438 * 21 20 18 47 47 H 1.09003 * 110.07696 * 87.95569 * 26 17 16 48 48 H 1.09005 * 110.07761 * 209.44250 * 26 17 16 49 49 H 1.08997 * 109.46720 * 60.00072 * 28 27 14 50 50 H 1.08996 * 109.46804 * 180.02562 * 28 27 14 51 51 H 1.08999 * 109.46961 * 299.99989 * 28 27 14 52 52 H 1.08996 * 110.07574 * 267.95997 * 29 12 10 53 53 H 1.08997 * 110.07397 * 29.50439 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7203 4.9332 1.3249 8 1 3.7324 5.3783 0.3299 9 6 5.0984 5.0908 1.9707 10 6 2.6858 5.6270 2.1730 11 8 1.8843 4.9738 2.8070 12 7 2.6512 6.9732 2.2271 13 6 3.4743 7.9067 1.4408 14 6 3.6847 9.1483 2.3235 15 1 4.6812 9.1683 2.7648 16 6 3.3984 10.4142 1.4986 17 7 1.9893 10.7611 1.7463 18 6 1.1302 11.3700 0.8708 19 1 0.1124 11.5754 1.1678 20 6 1.5677 11.7234 -0.3982 21 7 2.8080 11.4727 -0.7604 22 14 0.3956 12.5534 -1.5927 23 1 -0.9314 12.7216 -0.9478 24 1 0.9344 13.8849 -1.9701 25 1 0.2525 11.7143 -2.8095 26 6 1.6839 10.3249 3.1188 27 6 2.5752 9.0766 3.4013 28 6 3.1530 9.0742 4.8180 29 6 1.7784 7.7974 3.0793 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8340 0.9765 0.8892 36 1 3.8333 0.9767 -0.8908 37 1 4.9081 3.0256 -0.0899 38 1 3.3491 3.4419 -0.8412 39 1 5.8327 4.5179 1.4044 40 1 5.3810 6.1435 1.9716 41 1 5.0631 4.7232 2.9963 42 1 4.4348 7.4496 1.2031 43 1 2.9538 8.1833 0.5240 44 1 4.0467 11.2276 1.8243 45 1 3.5543 10.2133 0.4387 46 1 3.1136 11.7193 -1.6473 47 1 1.9283 11.1173 3.8263 48 1 0.6294 10.0617 3.2018 49 1 3.7253 9.9879 4.9785 50 1 2.3398 9.0225 5.5419 51 1 3.8055 8.2101 4.9428 52 1 0.8624 8.0485 2.5447 53 1 1.5409 7.2630 3.9991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101473207.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -95.721757 kcal Electronic energy + Delta-G solvation = -31329.308853 eV Core-core repulsion = 27202.195788 eV Total energy + Delta-G solvation = -4127.113066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.28592 -38.93473 -38.16737 -37.06306 -34.89604 -33.05686 -32.28723 -31.22294 -30.70406 -29.95634 -29.01383 -26.61471 -25.85407 -25.12547 -23.93241 -22.96588 -22.69722 -22.24045 -20.15675 -19.26816 -18.62171 -17.42255 -16.99502 -16.77432 -16.52194 -16.03904 -15.71872 -15.23119 -15.09627 -14.69948 -14.46411 -14.32663 -13.89875 -13.51475 -13.48429 -13.18206 -13.09858 -12.89662 -12.75589 -12.49983 -12.43483 -12.34004 -11.97640 -11.81730 -11.68510 -11.62698 -11.53426 -11.32556 -11.27289 -11.06510 -10.93683 -10.85374 -10.71809 -10.17672 -10.10833 -9.97622 -9.85527 -9.79156 -9.77017 -9.59069 -9.28859 -8.75547 -8.27842 -6.93195 -5.71101 -3.15219 2.85631 2.90937 3.36335 3.42844 3.44465 3.47416 3.83786 4.43637 4.58206 4.76344 4.83854 4.86387 4.91093 4.95465 5.02243 5.03558 5.07671 5.14599 5.17383 5.20907 5.22981 5.39073 5.43770 5.50086 5.56266 5.56880 5.59444 5.67880 5.71048 5.73531 5.79306 5.95142 5.96493 5.97335 6.07115 6.17728 6.28711 6.32174 6.35658 6.44124 6.52203 6.72401 6.76096 6.88029 6.97992 7.09642 7.34382 7.56522 7.75285 7.88495 8.32118 8.45748 9.15010 9.75507 10.42547 11.30525 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.002834 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.301374 B = 9876.454154 C =10973.612901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.378 6.378 4 C 0.067 3.933 5 C 0.059 3.941 6 O -0.349 6.349 7 C 0.075 3.925 8 H 0.084 0.916 9 C -0.169 4.169 10 C 0.531 3.469 11 O -0.529 6.529 12 N -0.611 5.611 13 C 0.107 3.893 14 C -0.115 4.115 15 H 0.077 0.923 16 C 0.141 3.859 17 N -0.595 5.595 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.145 3.855 27 C -0.090 4.090 28 C -0.122 4.122 29 C 0.128 3.872 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.010 0.990 45 H 0.128 0.872 46 H 0.252 0.748 47 H 0.022 0.978 48 H 0.044 0.956 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.050 0.950 52 H 0.072 0.928 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -17.427 2.879 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.010 4.010 5 C -0.017 4.017 6 O -0.267 6.267 7 C 0.013 3.987 8 H 0.102 0.898 9 C -0.227 4.227 10 C 0.319 3.681 11 O -0.405 6.405 12 N -0.346 5.346 13 C -0.016 4.016 14 C -0.136 4.136 15 H 0.095 0.905 16 C 0.015 3.985 17 N -0.318 5.318 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.746 3.254 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.018 3.982 27 C -0.093 4.093 28 C -0.180 4.180 29 C 0.006 3.994 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.028 0.972 45 H 0.145 0.855 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.069 0.931 52 H 0.090 0.910 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.449 -17.732 3.115 18.810 hybrid contribution -0.111 0.409 -0.879 0.976 sum 5.338 -17.323 2.236 18.264 Atomic orbital electron populations 1.21737 0.93708 1.02000 1.03508 1.22444 0.95841 0.83943 0.99680 1.88036 1.20303 1.26031 1.95310 1.22470 0.82476 0.95375 1.00662 1.22638 0.98357 0.92891 0.87856 1.88095 1.80688 1.20648 1.37284 1.21824 0.93741 0.83658 0.99427 0.89805 1.22253 0.94904 1.03258 1.02286 1.19859 0.84944 0.80636 0.82700 1.90694 1.40516 1.64223 1.45103 1.48536 1.39945 1.04069 1.42019 1.22443 0.94404 0.89090 0.95642 1.23039 0.97522 0.97408 0.95627 0.90504 1.21990 0.84744 0.89589 1.02184 1.44479 1.08801 1.69043 1.09487 1.19140 0.92633 1.29974 0.92577 0.90280 1.24746 0.96638 1.01702 0.97595 1.69575 1.14890 1.53008 1.19683 0.85981 0.79741 0.78714 0.80981 1.20526 1.21758 1.21748 1.21760 0.96085 0.92045 0.88292 1.22616 0.96232 0.95562 0.94863 1.21602 1.00278 1.01389 0.94704 1.22087 0.93243 0.89803 0.94261 0.91271 0.91533 0.91865 0.93719 0.93479 0.92431 0.91882 0.91608 0.92151 0.91370 0.90394 0.91287 0.91515 0.89854 0.97234 0.85507 0.93684 0.96071 0.93767 0.92255 0.92743 0.93056 0.91028 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.56 6.66 37.16 0.25 0.80 16 3 O -0.38 -4.97 10.31 -40.08 -0.41 -5.39 16 4 C 0.07 0.68 6.32 37.16 0.23 0.92 16 5 C 0.06 0.65 6.13 37.16 0.23 0.88 16 6 O -0.35 -5.29 9.51 -59.56 -0.57 -5.86 16 7 C 0.07 1.06 2.38 -27.88 -0.07 0.99 16 8 H 0.08 1.07 7.57 -51.93 -0.39 0.68 16 9 C -0.17 -1.88 9.35 37.16 0.35 -1.54 16 10 C 0.53 9.53 7.18 -10.99 -0.08 9.45 16 11 O -0.53 -11.52 16.81 -14.10 -0.24 -11.76 16 12 N -0.61 -10.56 3.32 -171.38 -0.57 -11.12 16 13 C 0.11 1.76 6.10 -3.24 -0.02 1.74 16 14 C -0.12 -2.01 3.62 -88.83 -0.32 -2.33 16 15 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 16 C 0.14 3.13 5.56 -3.24 -0.02 3.11 16 17 N -0.59 -14.32 3.39 -169.75 -0.58 -14.90 16 18 C -0.22 -5.72 10.34 -15.06 -0.16 -5.88 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -25.31 10.08 55.49 0.56 -24.75 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.15 2.89 6.29 -2.07 -0.01 2.88 16 27 C -0.09 -1.52 1.15 -151.37 -0.17 -1.70 16 28 C -0.12 -1.70 8.59 37.16 0.32 -1.38 16 29 C 0.13 2.27 6.16 -3.07 -0.02 2.25 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.53 7.79 -51.93 -0.40 0.12 16 38 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 40 H 0.08 0.82 6.04 -51.93 -0.31 0.50 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.90 5.40 -51.93 -0.28 0.62 16 43 H 0.08 1.62 7.41 -51.93 -0.39 1.23 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.13 3.15 4.82 -51.93 -0.25 2.90 16 46 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 47 H 0.02 0.42 7.91 -51.93 -0.41 0.01 16 48 H 0.04 0.87 7.56 -51.93 -0.39 0.48 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.07 1.39 7.42 -51.93 -0.39 1.01 16 53 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 LS Contribution 413.13 15.07 6.23 6.23 Total: -1.00 -32.74 413.13 -9.27 -42.01 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.47 Total: 0.30 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 0.80 Total: 8.78 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.59 Total: -50.77 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.22 Total: -23.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.74 -9.27 -42.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101473207.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.709 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds