Wall clock time and date at job start Sat Apr 11 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46855 * 2 1 4 4 C 1.42899 * 113.99894 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46869 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46813 * 65.00473 * 5 4 3 7 7 C 1.42903 * 113.99720 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47082 * 329.99826 * 7 6 5 9 9 C 1.52999 * 109.46914 * 90.00306 * 7 6 5 10 10 C 1.50708 * 109.46752 * 209.99722 * 7 6 5 11 11 O 1.21280 * 120.00029 * 355.00792 * 10 7 6 12 12 N 1.34777 * 119.99339 * 174.99726 * 10 7 6 13 13 C 1.47192 * 126.70678 * 0.03348 * 12 10 7 14 14 C 1.53745 * 106.42443 * 211.34768 * 13 12 10 15 15 H 1.08999 * 112.72306 * 104.04760 * 14 13 12 16 16 C 1.54452 * 109.01163 * 229.45311 * 14 13 12 17 17 N 1.48336 * 104.32645 * 137.35897 * 16 14 13 18 18 C 1.36932 * 128.19651 * 138.19273 * 17 16 14 19 19 H 1.08003 * 120.00476 * 344.10947 * 18 17 16 20 20 C 1.38811 * 119.99770 * 164.10918 * 18 17 16 21 21 N 1.31620 * 120.00070 * 350.53351 * 20 18 17 22 22 Si 1.86797 * 120.00012 * 170.53143 * 20 18 17 23 23 H 1.48504 * 109.47362 * 90.00325 * 22 20 18 24 24 H 1.48501 * 109.47352 * 210.00491 * 22 20 18 25 25 H 1.48504 * 109.47273 * 329.99935 * 22 20 18 26 26 C 1.48336 * 103.60124 * 318.19687 * 17 16 14 27 27 C 1.54450 * 104.32473 * 41.80136 * 26 17 16 28 28 C 1.53006 * 112.29507 * 96.98774 * 27 26 17 29 29 C 1.47201 * 126.69746 * 179.97438 * 12 10 7 30 30 H 1.09003 * 109.47249 * 60.00283 * 1 2 3 31 31 H 1.09004 * 109.46548 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46901 * 299.99557 * 1 2 3 33 33 H 1.08992 * 109.47082 * 240.00086 * 2 1 3 34 34 H 1.09000 * 109.46737 * 119.99749 * 2 1 3 35 35 H 1.09000 * 109.46795 * 60.00884 * 4 3 2 36 36 H 1.08989 * 109.47396 * 300.00015 * 4 3 2 37 37 H 1.09001 * 109.47110 * 305.00582 * 5 4 3 38 38 H 1.08996 * 109.46586 * 185.00325 * 5 4 3 39 39 H 1.08997 * 109.47638 * 59.99860 * 9 7 6 40 40 H 1.09004 * 109.46847 * 180.02562 * 9 7 6 41 41 H 1.09002 * 109.47097 * 299.99292 * 9 7 6 42 42 H 1.08994 * 110.06431 * 92.10305 * 13 12 10 43 43 H 1.08996 * 110.06243 * 330.58250 * 13 12 10 44 44 H 1.09000 * 110.46492 * 256.07047 * 16 14 13 45 45 H 1.09001 * 110.46400 * 18.52063 * 16 14 13 46 46 H 0.97006 * 119.99891 * 179.97438 * 21 20 18 47 47 H 1.08995 * 110.45860 * 160.51606 * 26 17 16 48 48 H 1.08999 * 110.45585 * 283.09216 * 26 17 16 49 49 H 1.08994 * 109.47012 * 302.34990 * 28 27 26 50 50 H 1.09005 * 109.46751 * 62.34919 * 28 27 26 51 51 H 1.09001 * 109.47080 * 182.34577 * 28 27 26 52 52 H 1.08999 * 110.06084 * 29.41363 * 29 12 10 53 53 H 1.08992 * 110.11011 * 267.91863 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9386 -0.0001 6 8 3.3974 3.5462 1.2205 7 6 3.7191 4.9348 1.3223 8 1 4.6314 5.1385 0.7618 9 6 2.5711 5.7676 0.7482 10 6 3.9274 5.2973 2.7702 11 8 3.7237 4.4737 3.6369 12 7 4.3402 6.5367 3.1019 13 6 4.6293 7.6446 2.1770 14 6 5.7417 8.4792 2.8326 15 1 6.7175 8.3128 2.3763 16 6 5.3317 9.9682 2.8126 17 7 5.7094 10.4710 4.1561 18 6 6.3028 11.6622 4.4783 19 1 6.7829 12.2515 3.7110 20 6 6.2873 12.1125 5.7913 21 7 5.5486 11.4965 6.6896 22 14 7.3150 13.5928 6.2832 23 1 6.5137 14.8311 6.1108 24 1 7.7236 13.4615 7.7048 25 1 8.5250 13.6626 5.4250 26 6 5.2922 9.3777 5.0677 27 6 5.7153 8.0861 4.3342 28 6 7.0653 7.5569 4.8226 29 6 4.5888 7.0470 4.4600 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8340 0.9766 -0.8893 36 1 3.8333 0.9769 0.8907 37 1 3.3497 3.4411 -0.8424 38 1 4.9081 3.0256 -0.0893 39 1 1.6587 5.5639 1.3087 40 1 2.8166 6.8268 0.8255 41 1 2.4204 5.5055 -0.2990 42 1 3.7379 8.2554 2.0348 43 1 4.9713 7.2525 1.2192 44 1 5.8795 10.5039 2.0374 45 1 4.2575 10.0656 2.6553 46 1 5.5381 11.8109 7.6073 47 1 5.8096 9.4602 6.0234 48 1 4.2123 9.3959 5.2151 49 1 7.8265 8.3254 4.6894 50 1 6.9928 7.2963 5.8786 51 1 7.3380 6.6717 4.2479 52 1 4.9021 6.2331 5.1138 53 1 3.6882 7.5175 4.8543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101473208.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:25 Heat of formation + Delta-G solvation = -94.654338 kcal Electronic energy + Delta-G solvation = -30858.582661 eV Core-core repulsion = 26731.515882 eV Total energy + Delta-G solvation = -4127.066779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.42418 -39.03451 -38.27260 -37.17070 -35.01514 -32.94594 -32.27730 -31.53135 -30.95728 -29.55574 -29.08149 -26.65258 -25.88105 -25.12995 -24.06170 -23.07805 -22.78352 -22.11947 -20.58757 -19.29483 -18.46559 -17.52233 -17.15507 -16.95219 -16.51610 -16.02666 -15.73059 -15.48583 -15.02248 -14.72275 -14.67256 -14.28184 -13.98419 -13.75410 -13.57806 -13.37916 -13.04372 -12.87662 -12.72748 -12.66486 -12.45030 -12.26825 -12.11852 -11.82937 -11.73252 -11.67326 -11.53289 -11.49845 -11.36276 -11.14357 -10.90328 -10.78782 -10.74788 -10.18524 -10.03669 -9.99751 -9.98443 -9.89196 -9.86878 -9.63611 -9.33458 -8.71049 -8.45681 -6.89236 -5.82045 -3.16923 2.72130 2.77114 3.35801 3.36021 3.41878 3.43495 3.70833 4.42525 4.45406 4.64230 4.72547 4.76670 4.81277 4.86273 4.90352 4.94865 5.00036 5.04137 5.09120 5.12287 5.20813 5.31985 5.40739 5.45159 5.47830 5.54980 5.56519 5.61119 5.62640 5.65758 5.71120 5.82898 5.92734 5.98495 6.05161 6.11678 6.21646 6.27649 6.32417 6.47350 6.63244 6.69490 6.75496 6.85958 6.92163 6.98088 7.26081 7.50539 7.69129 7.71923 8.17435 8.31486 9.06925 9.70609 10.48491 11.31656 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.002019 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.618980 B =13865.877800 C =14011.277198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.348 6.348 7 C 0.076 3.924 8 H 0.083 0.917 9 C -0.172 4.172 10 C 0.530 3.470 11 O -0.527 6.527 12 N -0.612 5.612 13 C 0.105 3.895 14 C -0.110 4.110 15 H 0.085 0.915 16 C 0.131 3.869 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.913 5.913 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.167 3.833 27 C -0.095 4.095 28 C -0.117 4.117 29 C 0.119 3.881 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.027 0.973 46 H 0.254 0.746 47 H 0.091 0.909 48 H 0.024 0.976 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.040 0.960 52 H 0.074 0.926 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -18.391 -16.067 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.015 3.985 8 H 0.101 0.899 9 C -0.230 4.230 10 C 0.317 3.683 11 O -0.402 6.402 12 N -0.347 5.347 13 C -0.018 4.018 14 C -0.131 4.131 15 H 0.103 0.897 16 C 0.004 3.996 17 N -0.315 5.315 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.559 5.559 22 Si 0.740 3.260 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.041 3.959 27 C -0.097 4.097 28 C -0.174 4.174 29 C -0.003 4.003 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.045 0.955 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.059 0.941 52 H 0.093 0.907 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.126 -18.691 -15.266 24.483 hybrid contribution 0.782 0.711 0.002 1.057 sum -3.344 -17.980 -15.264 23.821 Atomic orbital electron populations 1.21737 0.93711 1.02115 1.03304 1.22455 0.95764 0.83903 0.99873 1.87976 1.20435 1.26165 1.95371 1.22482 0.82312 0.95399 1.00889 1.22631 0.98271 0.92778 0.87905 1.88119 1.80080 1.20865 1.37568 1.21812 0.98929 0.83722 0.94040 0.89949 1.22271 0.98880 1.00133 1.01675 1.19921 0.77310 0.80669 0.90394 1.90708 1.50458 1.48238 1.50816 1.48581 1.66189 1.10518 1.09389 1.22354 0.98720 0.88027 0.92718 1.23102 0.97386 0.97217 0.95389 0.89690 1.21852 0.96813 0.90583 0.90319 1.45046 1.69747 1.16346 1.00400 1.18952 1.27374 0.95472 0.93663 0.90652 1.24886 0.99574 0.98858 0.96846 1.69883 1.41128 1.42170 1.02760 0.86160 0.79855 0.82253 0.77690 1.21499 1.21577 1.20601 1.21777 0.96836 0.82107 0.95193 1.22551 0.94437 0.96989 0.95769 1.21541 0.95990 0.99674 1.00183 1.22230 0.98384 0.96617 0.83104 0.91943 0.91208 0.91607 0.93661 0.93338 0.91846 0.92204 0.92224 0.91670 0.91037 0.90513 0.91335 0.90784 0.91339 0.93306 0.95539 0.93536 0.89051 0.95773 0.91804 0.92813 0.94061 0.90746 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.24 10.31 -40.08 -0.41 -4.65 16 4 C 0.07 0.59 6.32 37.16 0.23 0.83 16 5 C 0.06 0.58 6.13 37.16 0.23 0.81 16 6 O -0.35 -4.80 9.49 -59.70 -0.57 -5.36 16 7 C 0.08 0.94 2.44 -27.88 -0.07 0.87 16 8 H 0.08 0.81 7.27 -51.93 -0.38 0.43 16 9 C -0.17 -1.79 9.38 37.16 0.35 -1.44 16 10 C 0.53 8.56 7.26 -10.98 -0.08 8.48 16 11 O -0.53 -10.71 16.74 -14.30 -0.24 -10.95 16 12 N -0.61 -9.36 3.32 -171.64 -0.57 -9.93 16 13 C 0.10 1.37 4.88 -3.28 -0.02 1.36 16 14 C -0.11 -1.74 3.74 -88.29 -0.33 -2.07 16 15 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 16 C 0.13 2.47 6.76 -2.27 -0.02 2.46 16 17 N -0.59 -14.20 3.37 -168.47 -0.57 -14.77 16 18 C -0.23 -6.02 10.37 -15.06 -0.16 -6.18 16 19 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 20 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 21 N -0.91 -26.02 10.89 55.49 0.60 -25.41 16 22 Si 0.91 21.39 29.56 -169.99 -5.03 16.37 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.17 3.77 5.11 -2.27 -0.01 3.76 16 27 C -0.09 -1.69 1.08 -152.16 -0.16 -1.85 16 28 C -0.12 -1.97 8.61 37.16 0.32 -1.65 16 29 C 0.12 2.02 6.22 -3.26 -0.02 2.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.56 8.14 -51.94 -0.42 0.14 16 37 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 38 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.72 5.78 -51.93 -0.30 0.42 16 41 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 42 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 43 H 0.07 0.70 7.01 -51.93 -0.36 0.34 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.50 7.16 -51.93 -0.37 0.13 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.09 2.34 6.24 -51.93 -0.32 2.02 16 48 H 0.02 0.58 7.17 -51.93 -0.37 0.21 16 49 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 52 H 0.07 1.31 7.63 -51.93 -0.40 0.91 16 53 H 0.07 1.27 7.10 -51.93 -0.37 0.90 16 LS Contribution 413.21 15.07 6.23 6.23 Total: -1.00 -33.29 413.21 -9.23 -42.52 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -9.49 Total: -1.18 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 0.80 Total: 7.15 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.53 Total: -50.11 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.22 Total: -20.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.29 -9.23 -42.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101473208.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.136 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds