Wall clock time and date at job start Sat Apr 11 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99840 * 2 1 4 4 C 1.50703 * 120.00489 * 179.97438 * 2 1 3 5 5 H 1.09007 * 109.46699 * 4.99857 * 4 2 1 6 6 C 1.53001 * 109.47180 * 245.00416 * 4 2 1 7 7 C 1.50695 * 109.47048 * 174.99667 * 6 4 2 8 8 O 1.21282 * 120.00036 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00255 * 179.97438 * 7 6 4 10 10 C 1.46502 * 120.00289 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.51448 * 60.09947 * 11 10 9 13 13 C 1.53294 * 109.51225 * 180.25616 * 11 10 9 14 14 N 1.47231 * 108.40580 * 172.23190 * 13 11 10 15 15 C 1.36930 * 121.03478 * 129.45775 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18179 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18409 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48497 * 109.46975 * 59.99586 * 19 17 15 21 21 H 1.48495 * 109.47304 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47064 * 300.00118 * 19 17 15 23 23 C 1.47154 * 117.98080 * 309.48144 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.52276 * 23 14 13 25 25 O 1.42959 * 109.51185 * 300.00138 * 11 10 9 26 26 O 1.42896 * 109.47171 * 124.99999 * 4 2 1 27 27 C 1.42902 * 114.00297 * 270.00094 * 26 4 2 28 28 C 1.52995 * 109.47211 * 179.97438 * 27 26 4 29 29 H 1.08004 * 119.99910 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00353 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47492 * 269.99467 * 3 2 1 32 32 H 1.09000 * 109.46977 * 29.99923 * 3 2 1 33 33 H 1.09001 * 109.47142 * 150.00053 * 3 2 1 34 34 H 1.08999 * 109.46841 * 54.99935 * 6 4 2 35 35 H 1.08999 * 109.46999 * 294.99722 * 6 4 2 36 36 H 0.97000 * 119.99622 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.46877 * 60.00024 * 10 9 7 38 38 H 1.08999 * 109.47195 * 299.99992 * 10 9 7 39 39 H 1.09004 * 109.47366 * 299.89914 * 12 11 10 40 40 H 1.09004 * 109.47010 * 59.89917 * 12 11 10 41 41 H 1.09003 * 109.47551 * 179.89846 * 12 11 10 42 42 H 1.09001 * 109.68145 * 291.94467 * 13 11 10 43 43 H 1.09001 * 109.68444 * 52.49853 * 13 11 10 44 44 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.68310 * 290.77594 * 23 14 13 46 46 H 1.09005 * 109.67869 * 170.26376 * 23 14 13 47 47 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 48 48 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 49 49 H 1.08998 * 109.47217 * 300.00772 * 27 26 4 50 50 H 1.09002 * 109.46738 * 60.00240 * 27 26 4 51 51 H 1.09002 * 109.47006 * 60.00487 * 28 27 26 52 52 H 1.09007 * 109.47381 * 179.97438 * 28 27 26 53 53 H 1.08998 * 109.47729 * 300.00542 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3586 -2.1317 -0.0886 6 6 2.8465 -1.4413 1.3080 7 6 3.5009 -2.7977 1.3626 8 8 3.3551 -3.5786 0.4462 9 7 4.2482 -3.1429 2.4297 10 6 4.8849 -4.4613 2.4825 11 6 5.6677 -4.5976 3.7900 12 6 4.7124 -4.4476 4.9757 13 6 6.3396 -5.9744 3.8434 14 7 7.2328 -6.0108 5.0132 15 6 7.1745 -7.0402 5.9142 16 1 7.4874 -6.8822 6.9358 17 6 6.7132 -8.2870 5.5146 18 7 6.6475 -8.5851 4.2343 19 14 6.1855 -9.5418 6.7940 20 1 5.0683 -8.9872 7.5998 21 1 5.7362 -10.7831 6.1140 22 1 7.3321 -9.8522 7.6852 23 6 8.1903 -4.9067 5.1854 24 6 7.4283 -3.5818 5.0666 25 8 6.6712 -3.5814 3.8539 26 8 2.9710 -1.3316 -1.1030 27 6 2.4140 -1.8775 -2.3005 28 6 3.4680 -1.8557 -3.4092 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 2.2452 1.6198 -1.0277 32 1 1.4743 2.0647 0.5138 33 1 3.0158 1.1748 0.5138 34 1 2.1656 -1.3322 2.1522 35 1 3.6116 -0.6665 1.3558 36 1 4.3645 -2.5184 3.1628 37 1 5.5655 -4.5701 1.6381 38 1 4.1200 -5.2363 2.4349 39 1 4.2385 -3.4667 4.9387 40 1 3.9475 -5.2227 4.9263 41 1 5.2704 -4.5466 5.9068 42 1 5.5798 -6.7503 3.9378 43 1 6.9188 -6.1358 2.9342 44 1 6.3248 -9.4562 3.9551 45 1 8.9558 -4.9606 4.4114 46 1 8.6567 -4.9752 6.1682 47 1 6.7546 -3.4719 5.9165 48 1 8.1372 -2.7540 5.0545 49 1 2.0982 -2.9048 -2.1189 50 1 1.5539 -1.2815 -2.6056 51 1 4.3285 -2.4514 -3.1043 52 1 3.0434 -2.2725 -4.3225 53 1 3.7835 -0.8283 -3.5907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107979705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:28 Heat of formation + Delta-G solvation = -110.832418 kcal Electronic energy + Delta-G solvation = -31155.881830 eV Core-core repulsion = 27028.113517 eV Total energy + Delta-G solvation = -4127.768313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.20341 -40.41638 -39.15779 -36.51180 -36.08799 -35.86669 -33.35792 -33.19684 -32.49556 -31.00040 -29.56925 -28.22529 -28.04385 -27.29016 -25.02444 -24.69692 -23.65709 -22.83887 -21.37529 -20.28142 -19.76224 -18.94279 -18.11263 -17.84918 -17.45670 -16.95650 -16.76006 -16.55280 -16.15603 -16.07311 -15.58685 -15.53281 -15.28295 -15.09834 -14.85148 -14.63803 -14.58823 -14.19008 -14.10740 -13.88789 -13.58049 -13.29754 -13.19325 -13.15051 -12.92002 -12.77199 -12.72099 -12.60110 -12.52096 -12.44393 -12.42350 -12.18584 -11.97081 -11.95602 -11.83946 -11.76672 -11.15763 -10.89041 -10.72620 -10.49365 -10.44489 -10.07696 -10.04430 -8.72314 -7.89728 -5.36658 1.21470 1.46068 1.48080 1.55048 1.72360 2.20028 2.48569 2.80086 2.81761 3.24835 3.50624 3.65454 3.91198 3.94616 3.95409 4.02868 4.11817 4.16279 4.23772 4.35793 4.42126 4.45378 4.47431 4.50099 4.54781 4.60620 4.67023 4.72030 4.76115 4.80003 4.81682 4.88392 4.95669 4.97939 5.02907 5.05434 5.08072 5.12946 5.20726 5.21112 5.24316 5.36328 5.44122 5.53277 5.61033 5.66022 5.83863 6.29020 6.36331 6.37860 6.62357 7.06422 7.32475 7.75967 8.30320 9.15849 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.002404 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.462988 B =11645.202894 C =11970.201882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.156 4.156 3 C -0.110 4.110 4 C 0.139 3.861 5 H 0.058 0.942 6 C -0.128 4.128 7 C 0.508 3.492 8 O -0.580 6.580 9 N -0.708 5.708 10 C 0.152 3.848 11 C 0.094 3.906 12 C -0.152 4.152 13 C 0.168 3.832 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.074 0.926 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.967 3.033 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.275 1.275 23 C 0.101 3.899 24 C 0.053 3.947 25 O -0.385 6.385 26 O -0.386 6.386 27 C 0.062 3.938 28 C -0.146 4.146 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.414 0.586 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.066 0.934 43 H -0.011 1.011 44 H 0.250 0.750 45 H 0.010 0.990 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.118 0.882 49 H 0.034 0.966 50 H 0.057 0.943 51 H 0.044 0.956 52 H 0.087 0.913 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 21.604 -5.647 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.081 3.919 5 H 0.076 0.924 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.460 6.460 9 N -0.361 5.361 10 C 0.027 3.973 11 C 0.053 3.947 12 C -0.209 4.209 13 C 0.041 3.959 14 N -0.331 5.331 15 C -0.389 4.389 16 H 0.092 0.908 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.795 3.205 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.201 1.201 23 C -0.024 4.024 24 C -0.024 4.024 25 O -0.305 6.305 26 O -0.306 6.306 27 C -0.015 4.015 28 C -0.203 4.203 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.252 0.748 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.007 0.993 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.136 0.864 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.063 0.937 52 H 0.106 0.894 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.603 21.085 -6.471 24.922 hybrid contribution 0.012 -1.649 0.730 1.803 sum -11.590 19.437 -5.741 23.347 Atomic orbital electron populations 1.23949 0.94745 1.02973 0.99616 1.22213 0.95753 0.96031 1.01613 1.20748 1.00242 0.93433 1.02242 1.20818 0.90600 0.94395 0.86132 0.92441 1.21852 1.02040 0.93670 0.99157 1.21181 0.78357 0.89821 0.80997 1.90681 1.62843 1.54387 1.38096 1.45811 1.50778 1.17168 1.22331 1.20947 0.95016 0.85656 0.95711 1.22177 0.88304 0.89519 0.94661 1.22101 0.98656 1.02106 0.98050 1.21062 0.93176 0.93674 0.87988 1.44266 1.38444 1.23350 1.27055 1.19481 1.39783 0.88821 0.90857 0.90793 1.25810 1.02636 0.98682 0.97481 1.70183 1.50827 1.21830 1.15489 0.85343 0.78624 0.77998 0.78514 1.20009 1.22406 1.20072 1.21829 0.91934 0.89058 0.99623 1.23107 0.94773 0.97516 0.87040 1.87827 1.49534 1.53018 1.40073 1.87877 1.39448 1.83303 1.19984 1.22461 0.96956 0.96761 0.85301 1.21715 0.98660 1.02752 0.97148 0.88435 0.86315 0.91831 0.90459 0.91711 0.84684 0.86366 0.74839 0.93458 0.91283 0.90129 0.92732 0.92040 0.91547 0.99290 0.94086 0.97159 0.90922 0.91976 0.86440 0.94797 0.92509 0.93720 0.89447 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 13.91 67.79 0.94 -1.35 16 2 C -0.16 -2.44 5.05 -16.48 -0.08 -2.52 16 3 C -0.11 -1.43 9.84 71.24 0.70 -0.73 16 4 C 0.14 2.93 1.86 29.85 0.06 2.98 16 5 H 0.06 1.36 7.25 -2.38 -0.02 1.34 16 6 C -0.13 -2.43 5.22 29.85 0.16 -2.27 16 7 C 0.51 14.45 7.71 87.66 0.68 15.13 16 8 O -0.58 -21.72 15.42 10.74 0.17 -21.56 16 9 N -0.71 -19.46 5.15 -463.06 -2.39 -21.84 16 10 C 0.15 5.38 4.82 86.38 0.42 5.79 16 11 C 0.09 3.50 0.76 -10.70 -0.01 3.49 16 12 C -0.15 -4.88 7.92 71.98 0.57 -4.31 16 13 C 0.17 8.16 4.12 86.34 0.36 8.52 16 14 N -0.61 -29.95 2.57 -697.32 -1.79 -31.75 16 15 C -0.26 -13.88 9.65 84.04 0.81 -13.07 16 16 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 17 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 18 N -0.94 -55.66 11.14 21.65 0.24 -55.42 16 19 Si 0.97 44.21 29.59 68.60 2.03 46.24 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.10 4.07 6.73 86.35 0.58 4.65 16 24 C 0.05 1.67 6.60 72.08 0.48 2.15 16 25 O -0.39 -13.52 9.97 -148.98 -1.49 -15.00 16 26 O -0.39 -9.94 9.07 -135.21 -1.23 -11.16 16 27 C 0.06 1.40 6.46 71.98 0.46 1.87 16 28 C -0.15 -2.91 10.28 71.98 0.74 -2.17 16 29 H 0.10 1.27 7.84 -2.91 -0.02 1.24 16 30 H 0.12 1.13 8.04 -2.91 -0.02 1.11 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.74 8.06 -2.39 -0.02 0.72 16 33 H 0.06 0.85 7.02 -2.39 -0.02 0.84 16 34 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.12 1.92 7.19 -2.39 -0.02 1.90 16 36 H 0.41 9.06 7.20 -92.71 -0.67 8.40 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.08 1.97 6.87 -2.38 -0.02 1.96 16 40 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.06 2.15 6.12 -2.39 -0.01 2.14 16 42 H 0.07 3.61 6.14 -2.39 -0.01 3.60 16 43 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.07 2.72 7.96 -2.38 -0.02 2.70 16 47 H 0.06 1.83 6.25 -2.39 -0.01 1.82 16 48 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 49 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 53 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.42 418.02 3.03 -68.39 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.21 Total: 26.32 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 7.27 Total: 15.78 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.94 Total: -109.01 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -2.55 Total: -47.72 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.42 3.03 -68.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107979705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.438 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds