Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46728 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47221 * 65.00652 * 5 4 3 7 7 C 1.42898 * 113.99912 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46808 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46793 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46851 * 180.02562 * 9 8 7 11 11 O 1.21274 * 119.99990 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99887 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99849 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.56260 * 36.43762 * 13 12 10 15 15 C 1.54850 * 110.62561 * 273.53960 * 13 12 10 16 16 C 1.55848 * 103.44811 * 241.51563 * 15 13 12 17 17 H 1.09004 * 115.56191 * 159.56881 * 16 15 13 18 18 C 1.55845 * 105.05764 * 288.17212 * 16 15 13 19 19 C 1.54851 * 103.44730 * 71.82420 * 18 16 15 20 20 C 1.55850 * 103.44365 * 0.02562 * 19 18 16 21 21 H 1.09003 * 115.56327 * 159.56645 * 20 19 18 22 22 N 1.50229 * 101.04903 * 32.93396 * 16 15 13 23 23 C 1.36943 * 130.83834 * 126.05890 * 22 16 15 24 24 H 1.07994 * 120.00420 * 180.02562 * 23 22 16 25 25 C 1.38811 * 119.99782 * 0.02562 * 23 22 16 26 26 N 1.31625 * 120.00142 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00331 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46926 * 59.99344 * 27 25 23 29 29 H 1.48496 * 109.47437 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.46824 * 300.00217 * 27 25 23 31 31 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 33 33 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 34 34 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 35 35 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 36 36 H 1.09000 * 109.47187 * 300.00233 * 4 3 2 37 37 H 1.09001 * 109.46558 * 60.00281 * 4 3 2 38 38 H 1.09000 * 109.46738 * 185.00163 * 5 4 3 39 39 H 1.08994 * 109.47465 * 305.00250 * 5 4 3 40 40 H 1.09001 * 109.47167 * 299.99421 * 7 6 5 41 41 H 1.08999 * 109.47239 * 59.99584 * 7 6 5 42 42 H 1.09001 * 109.47111 * 299.99856 * 8 7 6 43 43 H 1.08999 * 109.47233 * 59.99981 * 8 7 6 44 44 H 1.09001 * 109.47330 * 299.99912 * 9 8 7 45 45 H 1.09003 * 109.46844 * 60.00527 * 9 8 7 46 46 H 0.97002 * 120.00230 * 359.97438 * 12 10 9 47 47 H 1.09005 * 110.62686 * 0.02562 * 15 13 12 48 48 H 1.09001 * 110.63132 * 123.02252 * 15 13 12 49 49 H 1.09005 * 110.62522 * 190.30986 * 18 16 15 50 50 H 1.09001 * 110.63074 * 313.33604 * 18 16 15 51 51 H 1.09004 * 110.62525 * 118.48277 * 19 18 16 52 52 H 1.08996 * 110.63034 * 241.35004 * 19 18 16 53 53 H 0.97001 * 119.99987 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3975 3.5461 1.2205 7 6 3.7191 4.9347 1.3223 8 6 3.2161 5.4779 2.6613 9 6 3.5610 6.9645 2.7705 10 6 3.0661 7.4993 4.0897 11 8 2.4935 6.7640 4.8657 12 7 3.2590 8.7950 4.4066 13 6 2.7784 9.3148 5.6892 14 1 2.8923 8.5657 6.4727 15 6 1.3012 9.7654 5.5761 16 6 1.3611 11.2887 5.8998 17 1 0.5134 11.8777 5.5495 18 6 1.6476 11.3665 7.4298 19 6 3.1247 10.9159 7.5429 20 6 3.5299 10.6278 6.0658 21 1 4.6008 10.6317 5.8625 22 7 2.7060 11.6501 5.3363 23 6 3.0694 12.6152 4.4353 24 1 4.1048 12.7232 4.1478 25 6 2.1069 13.4547 3.8915 26 7 0.8451 13.3235 4.2422 27 14 2.6024 14.7708 2.6619 28 1 3.2306 14.1309 1.4782 29 1 1.3983 15.5274 2.2344 30 1 3.5723 15.6999 3.2953 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.8333 0.9767 0.8908 37 1 3.8339 0.9765 -0.8892 38 1 4.9081 3.0254 -0.0893 39 1 3.3498 3.4409 -0.8424 40 1 4.7998 5.0628 1.2608 41 1 3.2418 5.4790 0.5074 42 1 2.1353 5.3498 2.7224 43 1 3.6931 4.9337 3.4764 44 1 4.6418 7.0921 2.7096 45 1 3.0842 7.5089 1.9554 46 1 3.7166 9.3833 3.7857 47 1 0.9261 9.6017 4.5658 48 1 0.6831 9.2418 6.3054 49 1 1.5290 12.3880 7.7911 50 1 0.9956 10.6861 7.9776 51 1 3.7387 11.7140 7.9604 52 1 3.2057 10.0137 8.1492 53 1 0.1725 13.9099 3.8619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111275414.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -100.549840 kcal Electronic energy + Delta-G solvation = -29632.399545 eV Core-core repulsion = 25505.077118 eV Total energy + Delta-G solvation = -4127.322427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.78943 -38.83246 -38.39732 -37.57399 -33.81253 -33.63106 -32.51646 -31.97120 -29.60840 -29.11685 -28.85147 -27.98493 -26.25796 -24.18908 -23.10381 -22.85873 -22.23713 -20.98123 -19.83889 -19.59588 -18.61538 -17.40277 -17.21681 -17.00524 -16.58428 -16.19031 -15.93492 -15.60451 -15.20881 -15.04347 -14.80114 -14.10352 -13.96417 -13.78294 -13.52599 -13.48886 -13.23804 -12.83047 -12.71155 -12.20866 -12.09271 -11.98114 -11.82173 -11.73618 -11.64897 -11.31559 -11.19829 -11.11117 -11.06677 -10.95009 -10.89657 -10.87382 -10.48956 -10.34734 -10.12551 -9.93227 -9.92054 -9.77774 -9.63208 -9.22512 -9.10556 -8.95989 -8.39662 -6.95576 -5.75108 -3.14315 3.04988 3.27867 3.34392 3.35165 3.39800 3.41642 3.82198 4.39734 4.63885 4.70769 4.81907 4.86388 4.91301 4.93500 4.96800 5.01999 5.08905 5.13330 5.20843 5.28130 5.33829 5.35387 5.41510 5.45103 5.48550 5.59634 5.64372 5.68313 5.72234 5.82225 5.88414 6.06790 6.11515 6.14267 6.17042 6.27726 6.33839 6.44571 6.51845 6.62252 6.77082 6.85062 6.86398 6.97224 7.04800 7.16325 7.35136 7.46254 7.79516 8.06009 8.15672 8.70024 9.06371 9.69550 10.51200 11.33907 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.001893 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.668510 B =14786.839494 C =15566.711272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.379 6.379 7 C 0.062 3.938 8 C -0.100 4.100 9 C -0.139 4.139 10 C 0.509 3.491 11 O -0.552 6.552 12 N -0.707 5.707 13 C 0.129 3.871 14 H 0.076 0.924 15 C -0.142 4.142 16 C 0.156 3.844 17 H 0.151 0.849 18 C -0.139 4.139 19 C -0.129 4.129 20 C 0.126 3.874 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.215 4.215 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.916 3.084 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.286 1.286 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.402 0.598 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.048 0.952 51 H 0.056 0.944 52 H 0.051 0.949 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -20.796 -7.193 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.298 6.298 7 C -0.014 4.014 8 C -0.138 4.138 9 C -0.179 4.179 10 C 0.295 3.705 11 O -0.431 6.431 12 N -0.357 5.357 13 C 0.023 3.977 14 H 0.094 0.906 15 C -0.183 4.183 16 C 0.049 3.951 17 H 0.168 0.832 18 C -0.179 4.179 19 C -0.169 4.169 20 C 0.018 3.982 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.343 4.343 24 H 0.095 0.905 25 C -0.206 4.206 26 N -0.567 5.567 27 Si 0.746 3.254 28 H -0.213 1.213 29 H -0.216 1.216 30 H -0.213 1.213 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.236 0.764 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.070 0.930 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.431 -20.974 -6.703 22.679 hybrid contribution 0.858 0.904 -1.172 1.711 sum 6.289 -20.071 -7.875 22.459 Atomic orbital electron populations 1.21742 0.93643 1.02154 1.03406 1.22459 0.95835 0.83870 0.99828 1.87993 1.20453 1.26182 1.95354 1.22511 0.82303 0.95698 1.00712 1.22490 0.98171 0.92573 0.88100 1.87962 1.81034 1.23215 1.37588 1.22542 0.98724 0.81809 0.98341 1.21175 1.03321 0.93347 0.95968 1.21546 1.02812 0.96881 0.96665 1.20463 0.79492 0.82292 0.88244 1.90668 1.42815 1.57722 1.51852 1.46035 1.58948 1.09712 1.20957 1.22620 0.95641 0.95372 0.84112 0.90572 1.23450 0.94491 0.99601 1.00722 1.23693 0.91821 0.91010 0.88549 0.83220 1.23070 0.94923 0.99645 1.00233 1.22887 0.97778 0.99392 0.96796 1.23136 0.94688 0.88425 0.91986 0.89476 1.46489 1.02457 1.34765 1.47353 1.18940 0.93207 1.07046 1.15122 0.90484 1.24717 0.95365 0.99811 1.00751 1.69486 0.99944 1.40620 1.46607 0.86140 0.77027 0.81393 0.80808 1.21313 1.21632 1.21319 0.91176 0.91563 0.91885 0.93658 0.93388 0.92419 0.92000 0.91879 0.92461 0.93412 0.93187 0.90269 0.90504 0.89110 0.88825 0.76384 0.92297 0.92899 0.92649 0.93318 0.92502 0.93008 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.13 10.31 -40.08 -0.41 -4.54 16 4 C 0.06 0.54 6.32 37.16 0.23 0.77 16 5 C 0.06 0.56 6.32 37.16 0.23 0.80 16 6 O -0.38 -4.61 10.31 -40.08 -0.41 -5.02 16 7 C 0.06 0.65 5.94 37.16 0.22 0.87 16 8 C -0.10 -1.26 4.87 -26.73 -0.13 -1.39 16 9 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 10 C 0.51 8.43 7.83 -10.98 -0.09 8.34 16 11 O -0.55 -11.10 15.70 5.56 0.09 -11.01 16 12 N -0.71 -12.03 5.10 -51.37 -0.26 -12.29 16 13 C 0.13 2.43 2.73 -65.40 -0.18 2.25 16 14 H 0.08 1.45 7.37 -51.93 -0.38 1.07 16 15 C -0.14 -2.96 6.22 -24.24 -0.15 -3.11 16 16 C 0.16 3.56 4.69 -62.80 -0.29 3.27 16 17 H 0.15 3.93 5.58 -51.93 -0.29 3.64 16 18 C -0.14 -2.78 6.44 -24.24 -0.16 -2.93 16 19 C -0.13 -2.34 6.44 -24.23 -0.16 -2.50 16 20 C 0.13 2.44 5.04 -62.78 -0.32 2.13 16 21 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 22 N -0.59 -13.89 2.98 -145.81 -0.44 -14.32 16 23 C -0.22 -5.56 10.59 -15.06 -0.16 -5.72 16 24 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.92 -25.70 10.48 55.49 0.58 -25.12 16 27 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 28 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.40 6.48 8.62 -40.82 -0.35 6.12 16 47 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 48 H 0.05 1.04 7.82 -51.93 -0.41 0.64 16 49 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.05 0.87 7.82 -51.93 -0.41 0.47 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.05 0.84 7.83 -51.93 -0.41 0.43 16 53 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 422.93 15.07 6.37 6.37 Total: -1.00 -31.84 422.93 -9.88 -41.72 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -9.81 Total: 7.46 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.56 Total: 0.55 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.12 Total: -51.73 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.74 Total: -20.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -31.84 -9.88 -41.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111275414.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.829 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds