Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42900 * 109.47343 * 2 1 4 4 C 1.42900 * 114.00080 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47013 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47266 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00062 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.47159 * 121.07839 * 0.02562 * 9 7 6 11 11 C 1.53283 * 108.53699 * 231.28120 * 10 9 7 12 12 H 1.09001 * 109.55045 * 66.88866 * 11 10 9 13 13 C 1.52997 * 109.51470 * 187.01351 * 11 10 9 14 14 O 1.43119 * 109.22036 * 306.94047 * 11 10 9 15 15 C 1.41880 * 114.42437 * 60.87534 * 14 11 10 16 16 C 1.54363 * 110.74727 * 63.52682 * 15 14 11 17 17 C 1.54457 * 102.87666 * 83.65437 * 16 15 14 18 18 N 1.47075 * 107.29916 * 21.49661 * 17 16 15 19 19 C 1.36935 * 125.63452 * 180.97525 * 18 17 16 20 20 H 1.08001 * 120.00601 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99956 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00366 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47493 * 89.99546 * 23 21 19 25 25 H 1.48502 * 109.47414 * 209.99910 * 23 21 19 26 26 H 1.48503 * 109.47050 * 329.99744 * 23 21 19 27 27 C 1.47571 * 108.73934 * 0.99453 * 18 17 16 28 28 C 1.47324 * 121.06993 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.46493 * 59.99961 * 1 2 3 30 30 H 1.08995 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46954 * 300.00203 * 1 2 3 32 32 H 1.09004 * 109.46954 * 239.99797 * 2 1 3 33 33 H 1.08996 * 109.46967 * 120.00120 * 2 1 3 34 34 H 1.09000 * 109.46863 * 60.00061 * 4 3 2 35 35 H 1.08993 * 109.46967 * 299.99881 * 4 3 2 36 36 H 1.08995 * 109.47311 * 59.99757 * 5 4 3 37 37 H 1.09006 * 109.47069 * 299.99973 * 5 4 3 38 38 H 1.09002 * 109.47692 * 59.99916 * 6 5 4 39 39 H 1.09002 * 109.47520 * 299.99929 * 6 5 4 40 40 H 1.09002 * 109.62850 * 111.56791 * 10 9 7 41 41 H 1.09006 * 109.62725 * 350.99735 * 10 9 7 42 42 H 1.09002 * 109.47153 * 179.74574 * 13 11 10 43 43 H 1.09001 * 109.46832 * 59.74765 * 13 11 10 44 44 H 1.09004 * 109.47261 * 299.74746 * 13 11 10 45 45 H 1.08999 * 110.73087 * 202.00766 * 16 15 14 46 46 H 1.09000 * 110.73151 * 325.30529 * 16 15 14 47 47 H 1.09002 * 109.88022 * 262.06408 * 17 16 15 48 48 H 1.09006 * 110.00033 * 140.99203 * 17 16 15 49 49 H 0.97000 * 120.00358 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.37784 * 217.85365 * 27 18 17 51 51 H 1.09001 * 110.37789 * 95.50429 * 27 18 17 52 52 H 1.09002 * 109.64302 * 11.17669 * 28 9 7 53 53 H 1.09006 * 109.80917 * 250.65812 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3507 3.0591 0.0012 7 6 5.7393 4.5151 0.0011 8 8 4.8809 5.3719 0.0016 9 7 7.0409 4.8652 0.0016 10 6 8.1018 3.8454 0.0016 11 6 9.0828 4.1627 1.1359 12 1 8.5851 4.0293 2.0965 13 6 10.2863 3.2221 1.0489 14 8 9.5252 5.5180 1.0108 15 6 8.4891 6.4836 1.0954 16 6 7.8224 6.4498 2.4872 17 6 8.7605 7.3323 3.3398 18 7 9.5081 8.1970 2.4144 19 6 10.4589 9.1151 2.7724 20 1 10.9530 9.7047 2.0143 21 6 10.7878 9.2881 4.1099 22 7 10.1860 8.5693 5.0339 23 14 12.0843 10.5410 4.5986 24 1 11.4359 11.8540 4.8450 25 1 12.7697 10.0874 5.8354 26 1 13.0782 10.6775 3.5037 27 6 9.0640 7.9124 1.0362 28 6 7.4474 6.2813 0.0021 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8341 0.9764 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 3.4224 3.4216 0.8911 37 1 3.4231 3.4221 -0.8889 38 1 5.7535 2.5759 -0.8890 39 1 5.7536 2.5752 0.8909 40 1 8.6276 3.8640 -0.9530 41 1 7.6630 2.8605 0.1619 42 1 10.9855 3.4513 1.8531 43 1 10.7823 3.3547 0.0874 44 1 9.9485 2.1901 1.1443 45 1 6.8211 6.8785 2.4460 46 1 7.7916 5.4318 2.8757 47 1 9.4524 6.7038 3.9006 48 1 8.1751 7.9433 4.0269 49 1 10.4155 8.6904 5.9685 50 1 9.9091 7.9532 0.3490 51 1 8.2923 8.6196 0.7323 52 1 6.5804 6.9113 0.2010 53 1 7.8761 6.5429 -0.9653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131638340.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = -99.902941 kcal Electronic energy + Delta-G solvation = -31060.092388 eV Core-core repulsion = 26932.798013 eV Total energy + Delta-G solvation = -4127.294375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.65488 -38.97228 -38.30674 -36.37117 -34.62414 -34.19038 -33.04998 -31.41187 -31.31865 -29.43677 -28.68266 -27.19980 -26.51550 -25.22093 -23.64640 -23.15076 -21.90480 -21.90130 -20.19589 -19.65277 -18.84465 -17.41750 -17.01750 -16.87060 -16.80477 -16.48072 -15.88319 -15.66608 -14.82440 -14.72786 -14.54404 -14.47048 -14.16257 -13.89982 -13.54930 -13.37161 -13.19197 -13.03601 -12.72244 -12.56238 -12.30159 -12.28217 -12.00654 -11.97503 -11.88950 -11.85270 -11.73438 -11.59262 -11.24830 -11.10326 -10.99111 -10.89784 -10.84973 -10.35850 -10.20941 -10.08490 -10.05114 -9.93577 -9.78270 -9.62076 -9.50596 -8.54788 -8.37667 -6.78760 -5.66201 -2.99283 2.56192 2.77237 3.34881 3.43649 3.48239 3.50350 3.85057 4.30849 4.52337 4.61834 4.66246 4.68595 4.69498 4.78941 4.87780 4.96738 4.99996 5.02216 5.04955 5.10021 5.13541 5.20472 5.24378 5.33402 5.39663 5.47666 5.52086 5.53447 5.58658 5.59914 5.73745 5.78216 5.81722 5.84411 5.93282 5.98972 6.02016 6.15482 6.17192 6.35195 6.49857 6.52163 6.56322 6.66415 6.88020 7.31608 7.58999 7.66145 7.68930 7.87263 8.10347 8.29555 9.26160 9.86163 10.51927 11.45718 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.002199 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.554354 B =12727.528251 C =13141.131693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.064 3.936 5 C -0.104 4.104 6 C -0.136 4.136 7 C 0.516 3.484 8 O -0.537 6.537 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.068 3.932 12 H 0.065 0.935 13 C -0.141 4.141 14 O -0.344 6.344 15 C 0.093 3.907 16 C -0.165 4.165 17 C 0.185 3.815 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.153 3.847 28 C 0.097 3.903 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.251 0.749 50 H 0.051 0.949 51 H 0.037 0.963 52 H 0.102 0.898 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 -20.425 -12.042 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.013 4.013 5 C -0.142 4.142 6 C -0.176 4.176 7 C 0.305 3.695 8 O -0.413 6.413 9 N -0.346 5.346 10 C -0.045 4.045 11 C 0.009 3.991 12 H 0.083 0.917 13 C -0.199 4.199 14 O -0.262 6.262 15 C 0.052 3.948 16 C -0.203 4.203 17 C 0.061 3.939 18 N -0.325 5.325 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.026 3.974 28 C -0.026 4.026 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.054 0.946 52 H 0.120 0.880 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.296 -19.673 -11.865 25.601 hybrid contribution 0.720 0.172 0.414 0.848 sum -10.576 -19.502 -11.450 24.965 Atomic orbital electron populations 1.21750 0.93721 1.02199 1.03288 1.22458 0.95692 0.83837 0.99981 1.87907 1.21134 1.26353 1.95411 1.22492 0.81346 0.97399 1.00071 1.21222 0.93229 0.94605 1.05123 1.21565 0.97556 0.94136 1.04378 1.20523 0.81722 0.91310 0.75976 1.90717 1.48731 1.52256 1.49644 1.48201 1.05406 1.07519 1.73476 1.22539 0.89616 0.91750 1.00604 1.22446 0.95141 0.84574 0.96940 0.91700 1.21693 0.97391 0.97192 1.03610 1.87919 1.32205 1.12979 1.93121 1.22397 0.87452 0.91219 0.93745 1.23354 0.99877 1.00837 0.96276 1.21099 0.91660 0.90924 0.90247 1.44414 1.44733 1.44039 0.99340 1.19049 1.12381 1.11934 0.91836 0.90375 1.24795 1.00130 0.99904 0.95723 1.69969 1.44668 1.42549 0.99867 0.86104 0.81059 0.80732 0.77774 1.21665 1.21757 1.20702 1.21339 0.97234 0.88870 0.89987 1.22143 0.99303 0.81635 0.99489 0.91817 0.91135 0.91747 0.93490 0.93419 0.93347 0.93247 0.90123 0.90267 0.88798 0.88687 0.90457 0.89226 0.91028 0.91753 0.91328 0.91658 0.92104 0.93559 0.93938 0.93847 0.93112 0.94573 0.88015 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.41 6.66 37.16 0.25 0.65 16 3 O -0.39 -3.93 10.34 -35.23 -0.36 -4.29 16 4 C 0.06 0.51 5.94 37.16 0.22 0.74 16 5 C -0.10 -1.02 4.87 -26.73 -0.13 -1.15 16 6 C -0.14 -1.19 4.07 -27.88 -0.11 -1.30 16 7 C 0.52 6.84 7.71 -10.98 -0.08 6.76 16 8 O -0.54 -9.22 15.47 5.56 0.09 -9.13 16 9 N -0.61 -8.01 2.95 -172.69 -0.51 -8.52 16 10 C 0.08 0.81 5.81 -3.54 -0.02 0.79 16 11 C 0.07 0.89 3.20 -26.59 -0.09 0.80 16 12 H 0.07 0.91 6.24 -51.93 -0.32 0.58 16 13 C -0.14 -1.49 9.57 37.16 0.36 -1.13 16 14 O -0.34 -6.15 9.92 -35.22 -0.35 -6.50 16 15 C 0.09 1.69 0.84 -89.64 -0.08 1.62 16 16 C -0.16 -3.27 5.88 -25.25 -0.15 -3.41 16 17 C 0.19 4.67 5.39 -2.96 -0.02 4.65 16 18 N -0.60 -15.69 3.40 -170.32 -0.58 -16.27 16 19 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.15 3.23 6.42 -2.87 -0.02 3.22 16 28 C 0.10 1.49 5.30 -3.92 -0.02 1.47 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.09 0.60 8.01 -51.93 -0.42 0.18 16 39 H 0.09 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.63 6.05 -51.93 -0.31 0.32 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 1.28 7.82 -51.93 -0.41 0.87 16 46 H 0.06 1.12 6.09 -51.93 -0.32 0.81 16 47 H 0.05 1.30 7.38 -51.93 -0.38 0.91 16 48 H 0.04 1.18 7.49 -51.93 -0.39 0.79 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 51 H 0.04 0.74 7.99 -51.93 -0.42 0.32 16 52 H 0.10 1.69 6.85 -51.93 -0.36 1.34 16 53 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 410.77 15.07 6.19 6.19 Total: -1.00 -34.62 410.77 -9.34 -43.96 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -9.60 Total: -2.08 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 0.24 Total: 6.25 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.52 Total: -51.86 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.63 Total: -19.93 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.62 -9.34 -43.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131638340.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.946 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds