Wall clock time and date at job start Sat Apr 11 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47292 * 2 1 4 4 C 1.42901 * 114.00019 * 180.02562 * 3 2 1 5 5 C 1.53783 * 113.61498 * 150.00075 * 4 3 2 6 6 C 1.53782 * 87.07923 * 89.11763 * 5 4 3 7 7 C 1.52994 * 113.61308 * 139.98460 * 6 5 4 8 8 C 1.50707 * 109.47088 * 176.52961 * 7 6 5 9 9 O 1.21276 * 119.99998 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99832 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47164 * 179.97438 * 11 10 8 13 13 H 1.09005 * 108.56675 * 60.00751 * 12 11 10 14 14 C 1.46923 * 108.61669 * 177.94346 * 12 11 10 15 15 N 1.50120 * 106.77497 * 177.78544 * 14 12 11 16 16 C 1.36929 * 120.63949 * 111.32729 * 15 14 12 17 17 H 1.07998 * 120.00204 * 155.66048 * 16 15 14 18 18 C 1.38811 * 119.99953 * 335.66639 * 16 15 14 19 19 N 1.31618 * 120.00230 * 340.73284 * 18 16 15 20 20 Si 1.86802 * 120.00239 * 160.73144 * 18 16 15 21 21 H 1.48501 * 109.47236 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47130 * 119.99675 * 20 18 16 23 23 H 1.48499 * 109.47197 * 239.99954 * 20 18 16 24 24 C 1.43425 * 118.72737 * 291.35125 * 15 14 12 25 25 C 1.55327 * 116.24158 * 89.35278 * 24 15 14 26 26 C 1.55193 * 108.87405 * 319.46180 * 25 24 15 27 27 O 1.39640 * 110.56693 * 322.14556 * 26 25 24 28 28 C 1.53775 * 87.17425 * 25.38987 * 6 5 4 29 29 H 1.08991 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47036 * 299.99959 * 1 2 3 31 31 H 1.09000 * 109.47127 * 59.99486 * 1 2 3 32 32 H 1.09002 * 109.46959 * 240.00592 * 2 1 3 33 33 H 1.08994 * 109.47675 * 120.00074 * 2 1 3 34 34 H 1.09003 * 112.84586 * 18.80555 * 4 3 2 35 35 H 1.09001 * 113.61036 * 334.57049 * 5 4 3 36 36 H 1.08994 * 113.69066 * 203.68137 * 5 4 3 37 37 H 1.08998 * 113.61161 * 270.80171 * 6 5 4 38 38 H 1.09003 * 109.47517 * 56.52899 * 7 6 5 39 39 H 1.09001 * 109.47031 * 296.52789 * 7 6 5 40 40 H 0.96999 * 120.00716 * 359.97438 * 10 8 7 41 41 H 1.09003 * 109.46798 * 59.99789 * 11 10 8 42 42 H 1.09001 * 109.47172 * 300.00032 * 11 10 8 43 43 H 1.08997 * 109.99368 * 297.09583 * 14 12 11 44 44 H 1.08997 * 109.99373 * 58.37876 * 14 12 11 45 45 H 0.97001 * 120.00441 * 180.02562 * 19 18 16 46 46 H 1.08998 * 108.12893 * 211.11084 * 24 15 14 47 47 H 1.09000 * 108.12746 * 327.59691 * 24 15 14 48 48 H 1.09002 * 109.57088 * 79.27749 * 25 24 15 49 49 H 1.09002 * 109.57207 * 199.65054 * 25 24 15 50 50 H 1.09007 * 109.25170 * 82.42524 * 26 25 24 51 51 H 1.09001 * 109.26189 * 201.86450 * 26 25 24 52 52 H 1.09005 * 113.61241 * 89.15767 * 28 6 5 53 53 H 1.08995 * 113.62054 * 220.06017 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9484 2.7253 -0.7051 6 6 3.8397 3.4325 0.6561 7 6 5.0017 4.3844 0.9467 8 6 4.7595 5.0874 2.2575 9 8 3.7560 4.8507 2.8962 10 7 5.6580 5.9790 2.7201 11 6 5.4223 6.6628 3.9941 12 6 6.5850 7.6137 4.2854 13 1 6.6471 8.3435 3.4781 14 6 6.3062 8.3249 5.5403 15 7 7.4932 9.2021 5.8142 16 6 7.3870 10.5650 5.7343 17 1 8.0709 11.1932 6.2857 18 6 6.4004 11.1391 4.9445 19 7 5.8228 10.4329 3.9958 20 14 5.8922 12.9142 5.2281 21 1 6.6863 13.4839 6.3462 22 1 6.1379 13.7026 3.9939 23 1 4.4481 12.9671 5.5701 24 6 8.7409 8.5854 6.1606 25 6 9.6805 8.2245 4.9775 26 6 8.8263 7.6546 3.8139 27 8 7.7916 6.8583 4.3091 28 6 4.0017 2.0470 1.3032 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.9277 0.5456 -0.3247 35 1 3.2634 3.1175 -1.4569 36 1 4.9714 2.6358 -1.0703 37 1 2.8653 3.8869 0.8355 38 1 5.0761 5.1217 0.1473 39 1 5.9305 3.8168 1.0050 40 1 6.4608 6.1681 2.2095 41 1 5.3471 5.9257 4.7936 42 1 4.4939 7.2309 3.9352 43 1 5.4094 8.9348 5.4317 44 1 6.1742 7.6100 6.3525 45 1 5.1336 10.8342 3.4437 46 1 9.2788 9.2593 6.8274 47 1 8.5253 7.6710 6.7134 48 1 10.2046 9.1192 4.6415 49 1 10.4033 7.4753 5.3007 50 1 8.4025 8.4798 3.2415 51 1 9.4613 7.0545 3.1621 52 1 5.0396 1.7705 1.4889 53 1 3.3598 1.8923 2.1705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150173039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:06 Heat of formation + Delta-G solvation = -83.960110 kcal Electronic energy + Delta-G solvation = -30593.382152 eV Core-core repulsion = 26466.779110 eV Total energy + Delta-G solvation = -4126.603042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.12309 -39.27869 -38.52599 -36.46038 -35.01044 -34.40098 -32.21166 -31.53248 -31.14374 -29.84602 -28.43923 -25.83636 -25.49934 -25.28990 -23.35891 -23.10471 -22.30113 -20.76714 -19.99475 -19.60497 -19.51807 -17.18566 -16.79262 -16.71247 -16.05496 -15.91624 -15.61839 -15.47913 -14.99325 -14.85269 -14.61506 -14.21782 -13.97446 -13.72718 -13.56330 -13.35579 -13.02603 -12.94948 -12.69148 -12.54513 -12.38563 -12.34512 -12.02501 -11.87979 -11.65117 -11.42716 -11.37809 -11.20387 -10.96020 -10.85583 -10.74022 -10.59261 -10.46564 -10.22810 -10.15278 -9.97894 -9.69638 -9.63245 -9.52856 -9.43408 -8.80155 -8.59556 -8.50230 -6.82476 -5.92745 -3.31412 3.00304 3.32305 3.34334 3.41691 3.43220 3.58229 4.42386 4.43888 4.47940 4.65582 4.69312 4.73378 4.80947 4.94727 5.07377 5.09623 5.15080 5.24430 5.28034 5.34217 5.50636 5.51163 5.59039 5.61965 5.62328 5.69805 5.75117 5.81387 5.83884 5.92290 6.02666 6.04567 6.11465 6.16851 6.33573 6.38977 6.42745 6.49151 6.60645 6.66543 6.71506 6.81515 6.94226 6.98230 7.07359 7.12536 7.33144 7.71753 7.91901 8.13833 8.31659 8.60865 9.06471 9.74665 10.29034 11.16264 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002131 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.968113 B =13135.132749 C =13982.062776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.063 3.937 5 C -0.139 4.139 6 C -0.082 4.082 7 C -0.134 4.134 8 C 0.507 3.493 9 O -0.547 6.547 10 N -0.717 5.717 11 C 0.121 3.879 12 C 0.061 3.939 13 H 0.107 0.893 14 C 0.143 3.857 15 N -0.587 5.587 16 C -0.248 4.248 17 H 0.070 0.930 18 C 0.001 3.999 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.161 3.839 25 C -0.172 4.172 26 C 0.067 3.933 27 O -0.370 6.370 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.399 0.601 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.019 0.981 45 H 0.255 0.745 46 H 0.032 0.968 47 H 0.031 0.969 48 H 0.056 0.944 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.050 0.950 52 H 0.085 0.915 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -17.805 -10.174 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.285 6.285 4 C 0.005 3.995 5 C -0.176 4.176 6 C -0.101 4.101 7 C -0.174 4.174 8 C 0.293 3.707 9 O -0.425 6.425 10 N -0.367 5.367 11 C -0.003 4.003 12 C 0.002 3.998 13 H 0.124 0.876 14 C 0.018 3.982 15 N -0.308 5.308 16 C -0.377 4.377 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.215 1.215 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.010 4.010 27 O -0.288 6.288 28 C -0.189 4.189 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.233 0.767 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.081 0.919 51 H 0.068 0.932 52 H 0.104 0.896 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.635 -17.918 -9.693 20.541 hybrid contribution 0.465 1.104 -0.299 1.235 sum -2.170 -16.813 -9.993 19.679 Atomic orbital electron populations 1.21748 0.93760 1.02151 1.03298 1.22511 0.95596 0.83939 0.99888 1.87917 1.19852 1.26118 1.94587 1.23046 0.81540 0.97567 0.97349 1.23295 1.01316 0.95604 0.97386 1.22211 0.99172 0.93786 0.94946 1.21705 1.00247 0.99590 0.95820 1.20608 0.83178 0.79489 0.87381 1.90676 1.27987 1.64311 1.59550 1.45970 1.24129 1.42729 1.23891 1.21665 0.99017 0.95107 0.84504 1.22191 0.82662 0.91742 1.03162 0.87596 1.20748 0.93271 0.91892 0.92288 1.44115 1.03249 1.02488 1.80925 1.19301 1.15282 0.81636 1.21496 0.91261 1.24911 1.01155 0.97924 0.95689 1.69872 1.29138 1.36585 1.19655 0.86198 0.78343 0.84555 0.77496 1.20391 1.21863 1.21522 1.20367 0.87257 0.95620 0.93580 1.23583 0.98946 0.99178 0.99622 1.22340 0.89723 0.93977 0.95009 1.87512 1.17962 1.37721 1.85636 1.23517 1.01179 0.96333 0.97846 0.91186 0.91677 0.91879 0.93531 0.93382 0.91165 0.90560 0.88978 0.87869 0.88912 0.89136 0.76722 0.92221 0.90554 0.87833 0.96290 0.93518 0.94920 0.95052 0.92511 0.93211 0.91919 0.93161 0.89619 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.15 0.38 -0.73 16 2 C 0.06 0.48 6.50 37.15 0.24 0.72 16 3 O -0.37 -4.12 10.27 -35.23 -0.36 -4.48 16 4 C 0.06 0.61 4.38 -25.83 -0.11 0.49 16 5 C -0.14 -1.24 7.48 -25.92 -0.19 -1.44 16 6 C -0.08 -0.95 3.04 -89.81 -0.27 -1.22 16 7 C -0.13 -1.48 5.52 -27.88 -0.15 -1.64 16 8 C 0.51 7.98 7.83 -10.98 -0.09 7.89 16 9 O -0.55 -10.70 15.79 5.56 0.09 -10.61 16 10 N -0.72 -11.42 5.41 -60.29 -0.33 -11.74 16 11 C 0.12 2.27 5.25 -4.04 -0.02 2.25 16 12 C 0.06 1.24 1.98 -29.64 -0.06 1.18 16 13 H 0.11 2.41 5.24 -51.93 -0.27 2.14 16 14 C 0.14 3.25 4.71 -4.93 -0.02 3.22 16 15 N -0.59 -14.05 2.61 -174.50 -0.46 -14.50 16 16 C -0.25 -6.44 9.62 -15.06 -0.14 -6.59 16 17 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 19 N -0.91 -23.69 9.56 55.49 0.53 -23.15 16 20 Si 0.90 20.90 29.60 -169.99 -5.03 15.87 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.16 3.39 5.32 -4.43 -0.02 3.36 16 25 C -0.17 -3.19 6.75 -24.34 -0.16 -3.35 16 26 C 0.07 1.24 6.38 38.32 0.24 1.49 16 27 O -0.37 -7.17 9.43 -31.94 -0.30 -7.47 16 28 C -0.15 -1.64 7.47 -25.83 -0.19 -1.84 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.10 1.47 7.73 -51.93 -0.40 1.07 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 40 H 0.40 5.64 8.26 -40.82 -0.34 5.31 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.10 2.59 6.03 -51.93 -0.31 2.28 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 46 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 47 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.06 1.30 6.66 -51.93 -0.35 0.95 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 53 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 413.23 15.07 6.23 6.23 Total: -1.00 -29.51 413.23 -9.91 -39.42 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -9.61 Total: 6.70 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.67 Total: 3.74 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.25 Total: -49.40 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.58 Total: -22.56 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.51 -9.91 -39.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150173039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.536 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds