Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.47450 * 2 1 4 4 C 1.42902 * 113.99891 * 179.97438 * 3 2 1 5 5 H 1.08991 * 115.56338 * 4.31007 * 4 3 2 6 6 C 1.53001 * 117.49408 * 218.61871 * 4 3 2 7 7 C 1.52999 * 117.49474 * 149.99600 * 4 3 2 8 8 H 1.09001 * 117.52100 * 214.96677 * 7 4 3 9 9 C 1.50703 * 117.50087 * 0.02562 * 7 4 3 10 10 O 1.21281 * 120.00125 * 0.02562 * 9 7 4 11 11 N 1.34778 * 120.00096 * 180.02562 * 9 7 4 12 12 C 1.46501 * 120.00019 * 185.07233 * 11 9 7 13 13 C 1.53001 * 109.45815 * 59.56086 * 12 11 9 14 14 C 1.53002 * 109.47254 * 54.78106 * 13 12 11 15 15 O 1.42898 * 109.46933 * 184.89398 * 14 13 12 16 16 C 1.42904 * 113.99350 * 179.97438 * 15 14 13 17 17 C 1.53035 * 109.45784 * 179.53234 * 12 11 9 18 18 C 1.53193 * 109.31269 * 58.64346 * 17 12 11 19 19 N 1.46931 * 108.77577 * 54.63561 * 18 17 12 20 20 C 1.36935 * 120.63178 * 126.36686 * 19 18 17 21 21 H 1.07997 * 120.00097 * 328.87333 * 20 19 18 22 22 C 1.38813 * 119.99544 * 148.86916 * 20 19 18 23 23 N 1.31612 * 120.00429 * 334.43462 * 22 20 19 24 24 Si 1.86806 * 119.99629 * 154.15552 * 22 20 19 25 25 H 1.48502 * 109.47140 * 90.00077 * 24 22 20 26 26 H 1.48498 * 109.47106 * 210.00172 * 24 22 20 27 27 H 1.48496 * 109.47289 * 330.00361 * 24 22 20 28 28 C 1.46933 * 118.73259 * 306.63936 * 19 18 17 29 29 C 1.52759 * 109.00641 * 53.31763 * 28 19 18 30 30 H 1.09002 * 109.46919 * 300.00426 * 1 2 3 31 31 H 1.08998 * 109.46794 * 59.99777 * 1 2 3 32 32 H 1.08996 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47276 * 239.99970 * 2 1 3 34 34 H 1.09003 * 109.47259 * 119.99671 * 2 1 3 35 35 H 1.09003 * 117.49263 * 145.02812 * 6 4 3 36 36 H 1.08994 * 117.50016 * 0.02562 * 6 4 3 37 37 H 0.97001 * 119.99817 * 5.07486 * 11 9 7 38 38 H 1.08997 * 109.46686 * 174.78291 * 13 12 11 39 39 H 1.08997 * 109.47235 * 294.78055 * 13 12 11 40 40 H 1.09003 * 109.47160 * 304.90179 * 14 13 12 41 41 H 1.09000 * 109.46994 * 64.89746 * 14 13 12 42 42 H 1.09002 * 109.46897 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.47401 * 300.00008 * 16 15 14 44 44 H 1.08999 * 109.47460 * 60.00310 * 16 15 14 45 45 H 1.08994 * 109.50229 * 298.69360 * 17 12 11 46 46 H 1.09004 * 109.49750 * 178.59389 * 17 12 11 47 47 H 1.09001 * 109.58804 * 294.84554 * 18 17 12 48 48 H 1.09004 * 109.58753 * 174.42117 * 18 17 12 49 49 H 0.96998 * 119.99979 * 353.93415 * 23 22 20 50 50 H 1.09006 * 109.57745 * 173.14302 * 28 19 18 51 51 H 1.08991 * 109.58576 * 293.56911 * 28 19 18 52 52 H 1.09003 * 109.56360 * 185.54953 * 29 28 19 53 53 H 1.08992 * 109.36627 * 65.49228 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.9772 0.5198 -0.0729 6 6 4.0511 2.5730 0.8478 7 6 4.0427 2.6873 -0.6780 8 1 4.9915 2.5548 -1.1979 9 6 3.0968 3.6850 -1.2953 10 8 1.8996 3.4988 -1.2421 11 7 3.5813 4.7841 -1.9066 12 6 2.6621 5.8085 -2.4085 13 6 1.8282 6.3572 -1.2490 14 6 2.7595 6.8564 -0.1425 15 8 1.9831 7.2633 0.9861 16 6 2.7611 7.7486 2.0821 17 6 3.4644 6.9467 -3.0430 18 6 4.3241 6.3876 -4.1809 19 7 3.4545 5.6659 -5.1200 20 6 3.4644 5.9705 -6.4550 21 1 3.6735 6.9799 -6.7770 22 6 3.2057 4.9817 -7.3943 23 7 3.4438 3.7202 -7.1045 24 14 2.5124 5.4411 -9.0670 25 1 3.6287 5.6991 -10.0117 26 1 1.6775 4.3253 -9.5801 27 1 1.6798 6.6640 -8.9389 28 6 2.5697 4.6152 -4.5982 29 6 1.7336 5.1905 -3.4565 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.0055 2.3648 1.3315 36 1 3.3726 3.2188 1.4049 37 1 4.5387 4.8969 -2.0142 38 1 1.2109 7.1824 -1.6041 39 1 1.1880 5.5674 -0.8562 40 1 3.4363 6.0543 0.1522 41 1 3.3385 7.7038 -0.5097 42 1 2.0986 8.0365 2.8985 43 1 3.4375 6.9647 2.4229 44 1 3.3405 8.6143 1.7614 45 1 4.1084 7.4016 -2.2903 46 1 2.7803 7.6974 -3.4389 47 1 5.0694 5.7041 -3.7740 48 1 4.8216 7.2071 -4.6998 49 1 3.8811 3.4883 -6.2703 50 1 1.9098 4.2658 -5.3924 51 1 3.1689 3.7844 -4.2261 52 1 1.1456 4.3954 -2.9980 53 1 1.0659 5.9577 -3.8485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150977164.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -98.063688 kcal Electronic energy + Delta-G solvation = -32465.892571 eV Core-core repulsion = 28338.677952 eV Total energy + Delta-G solvation = -4127.214619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.74684 -39.90689 -38.72306 -38.45819 -36.49959 -35.91232 -33.65167 -32.86597 -31.96897 -31.62553 -30.30668 -27.65363 -26.44254 -25.43347 -24.57243 -23.81412 -23.75038 -23.05796 -22.10085 -21.21959 -20.20220 -19.33237 -18.76919 -17.53603 -17.20449 -16.84402 -16.77057 -16.41444 -16.23200 -16.11363 -15.84605 -15.72583 -15.40455 -15.34192 -15.13677 -14.81271 -14.31523 -14.10943 -14.08806 -13.81230 -13.55039 -13.44815 -13.27473 -13.09578 -13.00654 -12.82869 -12.52517 -12.43678 -12.30353 -12.14250 -12.10027 -12.04557 -11.94761 -11.87670 -11.83698 -11.41514 -11.36635 -11.20609 -10.62849 -10.43945 -10.37846 -10.00761 -9.90380 -8.89409 -8.23259 -5.41987 1.55984 1.64817 1.67591 1.81611 2.23350 2.62120 2.64560 2.77764 2.91404 3.21557 3.55379 3.62739 3.78863 3.84917 3.90101 3.99671 4.05272 4.13326 4.18379 4.20021 4.28764 4.33155 4.41410 4.46324 4.48107 4.48816 4.51725 4.52480 4.56776 4.63054 4.75070 4.80553 4.82335 4.87648 4.94618 4.94868 5.00831 5.02104 5.03406 5.05041 5.17222 5.20473 5.23943 5.24462 5.39689 5.71808 5.88287 6.23798 6.39559 6.40333 6.73908 7.08111 7.48323 7.78068 8.25787 8.99388 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009123 B = 0.004104 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.267503 B = 6821.077787 C = 8862.175564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.038 3.962 5 H 0.144 0.856 6 C -0.136 4.136 7 C -0.211 4.211 8 H 0.146 0.854 9 C 0.534 3.466 10 O -0.547 6.547 11 N -0.710 5.710 12 C 0.206 3.794 13 C -0.118 4.118 14 C 0.076 3.924 15 O -0.420 6.420 16 C 0.026 3.974 17 C -0.125 4.125 18 C 0.145 3.855 19 N -0.612 5.612 20 C -0.358 4.358 21 H 0.050 0.950 22 C -0.072 4.072 23 N -0.939 5.939 24 Si 1.111 2.889 25 H -0.279 1.279 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.182 3.818 29 C -0.134 4.134 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.086 0.914 37 H 0.406 0.594 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.252 0.748 50 H 0.024 0.976 51 H 0.000 1.000 52 H 0.062 0.938 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -0.368 21.187 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.278 6.278 4 C -0.021 4.021 5 H 0.161 0.839 6 C -0.173 4.173 7 C -0.233 4.233 8 H 0.164 0.836 9 C 0.321 3.679 10 O -0.424 6.424 11 N -0.363 5.363 12 C 0.120 3.880 13 C -0.156 4.156 14 C 0.000 4.000 15 O -0.340 6.340 16 C -0.070 4.070 17 C -0.164 4.164 18 C 0.020 3.980 19 N -0.337 5.337 20 C -0.487 4.487 21 H 0.068 0.932 22 C -0.269 4.269 23 N -0.580 5.580 24 Si 0.936 3.064 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.203 1.203 28 C 0.056 3.944 29 C -0.174 4.174 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.104 0.896 37 H 0.242 0.758 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.042 0.958 51 H 0.018 0.982 52 H 0.080 0.920 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.363 -0.925 19.795 19.957 hybrid contribution 1.187 0.344 0.819 1.482 sum 3.550 -0.581 20.614 20.926 Atomic orbital electron populations 1.21718 0.93841 1.03036 1.01899 1.22695 0.95876 0.83216 1.00791 1.88143 1.18766 1.27101 1.93778 1.22906 0.82928 0.94177 1.02121 0.83872 1.23442 1.03733 1.00812 0.89319 1.22865 1.01690 1.00220 0.98490 0.83621 1.20008 0.88722 0.81443 0.77733 1.90685 1.17232 1.75631 1.58852 1.46006 1.10280 1.20728 1.59271 1.19888 0.89392 0.87526 0.91240 1.21749 0.98607 1.00737 0.94551 1.22429 0.93290 0.98518 0.85749 1.87848 1.35743 1.84276 1.26152 1.22918 0.96704 0.98439 0.88912 1.22247 0.99596 0.96361 0.98212 1.21050 0.91683 0.94870 0.90441 1.44273 1.43358 1.42407 1.03652 1.20166 1.50291 0.94617 0.83667 0.93210 1.27150 1.00183 0.93417 1.06120 1.70863 1.42082 1.19294 1.25758 0.82938 0.76462 0.75007 0.72041 1.20494 1.22006 1.20267 1.20337 0.91153 0.89777 0.93129 1.22205 0.98325 1.00534 0.96294 0.92360 0.94220 0.88716 0.93398 0.91088 0.83538 0.89577 0.75795 0.90986 0.92170 0.93119 0.91669 0.88646 0.93409 0.92804 0.88343 0.91164 0.95574 0.92532 0.93794 0.95761 0.98186 0.91951 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 10.28 71.98 0.74 -2.55 16 2 C 0.05 1.13 6.53 71.98 0.47 1.60 16 3 O -0.36 -10.69 8.48 -127.82 -1.08 -11.77 16 4 C 0.04 0.84 6.40 30.59 0.20 1.04 16 5 H 0.14 2.24 7.93 -2.39 -0.02 2.22 16 6 C -0.14 -2.45 10.18 30.60 0.31 -2.14 16 7 C -0.21 -4.98 6.19 -11.54 -0.07 -5.05 16 8 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 9 C 0.53 17.31 6.79 87.66 0.59 17.90 16 10 O -0.55 -22.28 11.22 18.13 0.20 -22.07 16 11 N -0.71 -21.20 3.09 -422.79 -1.31 -22.51 16 12 C 0.21 6.81 0.35 3.63 0.00 6.81 16 13 C -0.12 -3.71 4.32 30.60 0.13 -3.58 16 14 C 0.08 1.95 5.45 71.98 0.39 2.34 16 15 O -0.42 -11.39 10.70 -148.98 -1.59 -12.99 16 16 C 0.03 0.47 11.01 113.37 1.25 1.71 16 17 C -0.13 -3.84 4.75 30.67 0.15 -3.69 16 18 C 0.14 5.55 6.24 86.36 0.54 6.09 16 19 N -0.61 -30.50 2.80 -699.90 -1.96 -32.46 16 20 C -0.36 -20.12 9.43 84.03 0.79 -19.32 16 21 H 0.05 2.78 7.95 -2.91 -0.02 2.76 16 22 C -0.07 -4.14 4.64 84.86 0.39 -3.75 16 23 N -0.94 -58.50 12.57 21.65 0.27 -58.23 16 24 Si 1.11 52.08 29.99 68.60 2.06 54.13 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 28 C 0.18 9.12 4.50 86.22 0.39 9.51 16 29 C -0.13 -5.69 4.65 30.53 0.14 -5.55 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.41 10.30 7.26 -92.71 -0.67 9.63 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.27 6.47 -2.39 -0.02 2.26 16 40 H 0.05 1.25 7.10 -2.39 -0.02 1.23 16 41 H 0.07 1.41 6.78 -2.39 -0.02 1.39 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.10 2.27 6.62 -2.39 -0.02 2.25 16 46 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 47 H 0.03 0.95 6.93 -2.39 -0.02 0.93 16 48 H 0.06 2.17 7.93 -2.38 -0.02 2.15 16 49 H 0.25 16.08 6.97 -92.71 -0.65 15.43 16 50 H 0.02 1.41 6.59 -2.38 -0.02 1.39 16 51 H 0.00 0.01 7.50 -2.39 -0.02 -0.01 16 52 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 53 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -77.98 407.99 3.34 -74.64 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.34 Total: 29.88 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 6.42 Total: 1.38 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.00 Total: -113.20 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -2.47 Total: -46.83 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.06 Total: 54.13 kcal Total: -77.98 3.34 -74.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150977164.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.423 kcal (2) G-P(sol) polarization free energy of solvation -77.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds