Wall clock time and date at job start Sat Apr 11 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46763 * 30.00224 * 4 3 2 6 6 C 1.50693 * 109.46967 * 269.99825 * 4 3 2 7 7 O 1.21273 * 120.00473 * 354.99811 * 6 4 3 8 8 N 1.34780 * 119.99580 * 174.99844 * 6 4 3 9 9 C 1.47424 * 125.64981 * 0.02562 * 8 6 4 10 10 C 1.54912 * 104.83065 * 204.09110 * 9 8 6 11 11 C 1.55155 * 101.58301 * 322.98918 * 10 9 8 12 12 H 1.08993 * 110.72376 * 277.13992 * 11 10 9 13 13 N 1.46499 * 110.71992 * 154.04133 * 11 10 9 14 14 C 1.36940 * 120.00137 * 86.45675 * 13 11 10 15 15 H 1.07998 * 119.99567 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00305 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00114 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99944 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47708 * 89.99738 * 18 16 14 20 20 H 1.48500 * 109.46936 * 210.00114 * 18 16 14 21 21 H 1.48507 * 109.47109 * 329.99422 * 18 16 14 22 22 C 1.47029 * 125.64470 * 179.71660 * 8 6 4 23 23 H 1.08993 * 109.88260 * 298.39520 * 22 8 6 24 24 C 1.52997 * 109.88361 * 59.56202 * 22 8 6 25 25 C 1.53004 * 109.47098 * 149.99756 * 4 3 2 26 26 C 1.53177 * 109.54318 * 59.82312 * 25 4 3 27 27 C 1.53105 * 109.15754 * 183.23742 * 26 25 4 28 28 O 1.42904 * 109.48317 * 57.47760 * 27 26 25 29 29 C 1.42902 * 114.09723 * 298.88641 * 28 27 26 30 30 C 1.53090 * 109.41836 * 61.16287 * 29 28 27 31 31 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 36 36 H 1.08993 * 110.36727 * 322.92917 * 9 8 6 37 37 H 1.09002 * 110.36585 * 85.14899 * 9 8 6 38 38 H 1.08999 * 111.00508 * 81.06828 * 10 9 8 39 39 H 1.08998 * 111.00530 * 204.88040 * 10 9 8 40 40 H 0.97005 * 120.00485 * 266.45298 * 13 11 10 41 41 H 0.96995 * 119.99906 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.47135 * 58.54241 * 24 22 8 43 43 H 1.08995 * 109.47287 * 178.54167 * 24 22 8 44 44 H 1.09001 * 109.46852 * 298.54497 * 24 22 8 45 45 H 1.09001 * 109.54214 * 180.02562 * 25 4 3 46 46 H 1.08997 * 109.52413 * 303.06118 * 26 25 4 47 47 H 1.09004 * 109.52152 * 63.24767 * 26 25 4 48 48 H 1.08994 * 109.40551 * 297.50121 * 27 26 25 49 49 H 1.08992 * 109.49331 * 177.50580 * 27 26 25 50 50 H 1.08998 * 109.48716 * 301.17736 * 29 28 27 51 51 H 1.09008 * 109.49247 * 181.14623 * 29 28 27 52 52 H 1.08998 * 109.52599 * 182.48625 * 30 29 28 53 53 H 1.09000 * 109.57274 * 62.32136 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9310 1.4999 1.4216 7 8 3.1416 1.5295 2.3417 8 7 5.2558 1.5028 1.6698 9 6 6.3209 1.4701 0.6511 10 6 7.5506 0.8756 1.3822 11 6 7.4067 1.5026 2.7941 12 1 7.8233 2.5096 2.8133 13 7 8.0498 0.6583 3.8041 14 6 9.3859 0.8026 4.0671 15 1 9.9656 1.5384 3.5297 16 6 9.9951 0.0030 5.0244 17 7 11.2795 0.1413 5.2768 18 14 8.9925 -1.2702 5.9534 19 1 9.0235 -2.5589 5.2163 20 1 9.5686 -1.4611 7.3087 21 1 7.5881 -0.8025 6.0740 22 6 5.8779 1.5456 3.0013 23 1 5.5969 2.4664 3.5123 24 6 5.4324 0.3343 3.8230 25 6 3.8410 2.7455 -0.7208 26 6 3.2302 3.9530 -0.0030 27 6 3.5785 5.2270 -0.7775 28 8 3.1017 5.1141 -2.1199 29 6 3.6758 4.0308 -2.8539 30 6 3.3296 2.7086 -2.1642 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 6.0294 0.8308 -0.1821 37 1 6.5386 2.4778 0.2973 38 1 7.4892 -0.2116 1.4293 39 1 8.4787 1.1922 0.9063 40 1 7.5291 -0.0028 4.2866 41 1 11.7052 -0.4176 5.9454 42 1 5.7118 -0.5811 3.3014 43 1 5.9174 0.3590 4.7988 44 1 4.3507 0.3622 3.9540 45 1 4.9276 2.8325 -0.7214 46 1 2.1470 3.8403 0.0421 47 1 3.6329 4.0180 1.0078 48 1 4.6601 5.3612 -0.7861 49 1 3.1095 6.0850 -0.2961 50 1 4.7588 4.1494 -2.8897 51 1 3.2769 4.0269 -3.8683 52 1 3.8034 1.8845 -2.6976 53 1 2.2486 2.5690 -2.1642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179264452.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:54 Heat of formation + Delta-G solvation = -130.821747 kcal Electronic energy + Delta-G solvation = -32287.742386 eV Core-core repulsion = 28159.107271 eV Total energy + Delta-G solvation = -4128.635115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.85039 -40.29619 -39.33613 -38.15207 -36.15443 -35.29524 -33.62436 -32.22375 -32.04558 -32.00062 -31.24399 -28.69120 -26.99365 -25.37993 -24.69435 -24.49910 -23.74932 -23.47018 -21.24226 -21.00130 -20.19405 -19.86083 -18.37297 -17.87961 -17.44816 -16.98651 -16.91122 -16.65239 -16.37606 -16.12761 -15.86007 -15.70304 -15.48169 -15.14918 -14.94871 -14.70392 -14.66803 -14.28274 -14.03193 -13.66378 -13.50117 -13.37814 -13.22434 -13.15281 -13.11939 -12.94668 -12.90940 -12.76854 -12.70368 -12.27296 -12.22709 -12.15252 -12.08813 -11.88849 -11.76547 -11.68887 -11.55677 -11.28364 -11.14745 -10.98558 -10.52230 -10.19886 -9.72132 -9.33177 -8.03548 -5.36846 1.35223 1.36182 1.43185 1.51602 1.78276 2.45432 2.64071 3.01616 3.23993 3.32242 3.52383 3.56831 3.62442 3.75988 3.81824 3.94758 4.03692 4.08345 4.12048 4.18713 4.25649 4.30369 4.33378 4.37805 4.37873 4.44500 4.49800 4.55181 4.61316 4.68611 4.72094 4.73558 4.78703 4.82307 4.83868 4.93073 4.98171 5.00563 5.09495 5.14807 5.18800 5.21525 5.23002 5.27170 5.43203 5.44849 5.77257 6.05215 6.20621 6.31819 6.51380 7.05402 7.11180 7.81168 7.98808 9.17567 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.003128 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.340957 B = 8948.781823 C =10125.636784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.090 3.910 5 H 0.111 0.889 6 C 0.503 3.497 7 O -0.570 6.570 8 N -0.605 5.605 9 C 0.099 3.901 10 C -0.144 4.144 11 C 0.170 3.830 12 H 0.068 0.932 13 N -0.747 5.747 14 C -0.225 4.225 15 H 0.067 0.933 16 C -0.057 4.057 17 N -0.980 5.980 18 Si 0.938 3.062 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.257 1.257 22 C 0.133 3.867 23 H 0.066 0.934 24 C -0.156 4.156 25 C -0.080 4.080 26 C -0.143 4.143 27 C 0.065 3.935 28 O -0.404 6.404 29 C 0.055 3.945 30 C -0.140 4.140 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.368 0.632 41 H 0.257 0.743 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.108 0.892 52 H 0.099 0.901 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.009 3.176 -20.472 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.284 6.284 4 C 0.029 3.971 5 H 0.128 0.872 6 C 0.293 3.707 7 O -0.449 6.449 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.185 4.185 11 C 0.061 3.939 12 H 0.086 0.914 13 N -0.392 5.392 14 C -0.355 4.355 15 H 0.085 0.915 16 C -0.249 4.249 17 N -0.630 5.630 18 Si 0.766 3.234 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.182 1.182 22 C 0.029 3.971 23 H 0.084 0.916 24 C -0.214 4.214 25 C -0.099 4.099 26 C -0.181 4.181 27 C -0.012 4.012 28 O -0.323 6.323 29 C -0.021 4.021 30 C -0.178 4.178 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.205 0.795 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.126 0.874 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.084 0.916 51 H 0.126 0.874 52 H 0.118 0.882 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.595 3.553 -20.088 28.286 hybrid contribution 0.264 -1.308 1.770 2.217 sum -19.331 2.245 -18.318 26.726 Atomic orbital electron populations 1.21705 0.92648 1.03269 1.02578 1.22729 0.96742 0.82960 1.00264 1.87988 1.18599 1.27658 1.94172 1.22069 0.83329 1.01568 0.90173 0.87163 1.21623 0.80440 0.75606 0.93068 1.90673 1.55377 1.51135 1.47702 1.48674 1.05204 1.72247 1.07924 1.22671 0.85769 1.02707 0.91092 1.23338 0.98021 1.00755 0.96354 1.21333 0.88893 0.94648 0.89067 0.91417 1.42967 1.06711 1.43618 1.45910 1.19034 0.84948 1.15517 1.16046 0.91464 1.25339 0.96538 1.02145 1.00867 1.69844 1.11131 1.44203 1.37850 0.85687 0.79222 0.80243 0.78253 1.20339 1.22344 1.18240 1.21558 0.93207 0.98140 0.84243 0.91623 1.21970 1.01311 0.98120 0.99997 1.21435 1.01626 0.91188 0.95623 1.22070 1.01625 0.95682 0.98674 1.22578 0.99415 0.97047 0.82156 1.87912 1.68332 1.51232 1.24811 1.22783 0.98621 0.84979 0.95714 1.22162 1.02623 0.99473 0.93508 0.91169 0.93519 0.89249 0.95077 0.90801 0.87748 0.88692 0.91637 0.89403 0.79517 0.93368 0.92443 0.92337 0.92293 0.87362 0.92120 0.92842 0.91810 0.88755 0.91618 0.87419 0.88223 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.91 6.46 71.98 0.46 1.37 16 3 O -0.37 -8.24 8.08 -129.99 -1.05 -9.29 16 4 C 0.09 1.74 1.62 29.85 0.05 1.79 16 5 H 0.11 1.53 7.26 -2.38 -0.02 1.51 16 6 C 0.50 13.63 5.79 87.65 0.51 14.13 16 7 O -0.57 -20.54 15.39 15.98 0.25 -20.30 16 8 N -0.61 -15.36 3.08 -788.04 -2.43 -17.78 16 9 C 0.10 1.85 5.34 86.86 0.46 2.31 16 10 C -0.14 -3.84 6.77 31.99 0.22 -3.62 16 11 C 0.17 5.80 3.44 46.18 0.16 5.96 16 12 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 13 N -0.75 -32.76 4.83 -317.32 -1.53 -34.29 16 14 C -0.22 -12.08 10.46 84.03 0.88 -11.20 16 15 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 16 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 17 N -0.98 -61.12 13.97 21.65 0.30 -60.81 16 18 Si 0.94 44.67 27.74 68.60 1.90 46.57 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.26 -11.29 6.52 99.48 0.65 -10.64 16 22 C 0.13 4.20 3.49 45.34 0.16 4.36 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 C -0.16 -5.28 7.94 71.98 0.57 -4.70 16 25 C -0.08 -1.25 2.03 -10.67 -0.02 -1.27 16 26 C -0.14 -2.87 5.01 30.69 0.15 -2.72 16 27 C 0.06 1.11 6.84 72.02 0.49 1.60 16 28 O -0.40 -7.53 10.77 -148.98 -1.60 -9.14 16 29 C 0.06 0.67 6.84 72.01 0.49 1.16 16 30 C -0.14 -1.67 5.32 30.69 0.16 -1.51 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 36 H 0.10 1.29 7.33 -2.39 -0.02 1.27 16 37 H 0.10 1.36 7.16 -2.39 -0.02 1.34 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.37 16.00 2.83 -92.70 -0.26 15.74 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 43 H 0.06 2.13 6.74 -2.39 -0.02 2.11 16 44 H 0.06 2.06 6.74 -2.39 -0.02 2.05 16 45 H 0.11 1.32 5.56 -2.39 -0.01 1.31 16 46 H 0.06 1.49 7.60 -2.39 -0.02 1.48 16 47 H 0.05 1.27 7.35 -2.38 -0.02 1.25 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 52 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.07 1.06 7.60 -2.39 -0.02 1.04 16 Total: -1.00 -73.35 402.22 2.36 -70.99 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.56 Total: 30.76 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.96 Total: 3.30 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.66 Total: -112.89 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -2.41 Total: -38.73 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -73.35 2.36 -70.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179264452.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.835 kcal (2) G-P(sol) polarization free energy of solvation -73.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds