Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42892 * 109.47073 * 2 1 4 4 C 1.42903 * 114.00229 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47626 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00064 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00193 * 180.02562 * 5 4 3 8 8 C 1.46931 * 120.63029 * 179.97438 * 7 5 4 9 9 C 1.53200 * 108.77279 * 126.41292 * 8 7 5 10 10 C 1.53039 * 109.31160 * 54.63574 * 9 8 7 11 11 C 1.53001 * 109.45758 * 178.62691 * 10 9 8 12 12 H 1.09001 * 109.47966 * 60.05156 * 11 10 9 13 13 C 1.53095 * 109.48058 * 180.08393 * 11 10 9 14 14 C 1.53173 * 109.16390 * 177.59289 * 13 11 10 15 15 H 1.08999 * 109.54522 * 62.88814 * 14 13 11 16 16 N 1.46501 * 109.61645 * 183.10920 * 14 13 11 17 17 C 1.36941 * 120.00157 * 204.60043 * 16 14 13 18 18 H 1.08001 * 119.99497 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99775 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00767 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99676 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47348 * 89.99815 * 21 19 17 23 23 H 1.48506 * 109.47182 * 209.99821 * 21 19 17 24 24 H 1.48494 * 109.47060 * 329.99581 * 21 19 17 25 25 C 1.53177 * 109.03777 * 303.02013 * 14 13 11 26 26 C 1.53093 * 109.16253 * 56.97859 * 25 14 13 27 27 O 1.42899 * 109.48279 * 300.02571 * 11 10 9 28 28 C 1.53046 * 109.52798 * 298.64112 * 10 9 8 29 29 C 1.46928 * 120.63179 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.47340 * 59.99939 * 1 2 3 31 31 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47215 * 299.99955 * 1 2 3 33 33 H 1.09003 * 109.46701 * 240.00071 * 2 1 3 34 34 H 1.08997 * 109.46970 * 120.00298 * 2 1 3 35 35 H 1.09000 * 109.47189 * 59.99705 * 4 3 2 36 36 H 1.09004 * 109.46912 * 300.00082 * 4 3 2 37 37 H 1.08998 * 109.58425 * 6.63242 * 8 7 5 38 38 H 1.08999 * 109.58795 * 246.19692 * 8 7 5 39 39 H 1.08997 * 109.49280 * 294.68615 * 9 8 7 40 40 H 1.08992 * 109.49396 * 174.58854 * 9 8 7 41 41 H 1.09002 * 109.46050 * 58.65698 * 10 9 8 42 42 H 1.08998 * 109.52426 * 297.50169 * 13 11 10 43 43 H 1.09000 * 109.51856 * 57.68446 * 13 11 10 44 44 H 0.97001 * 120.00060 * 24.59916 * 16 14 13 45 45 H 0.97002 * 120.00576 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.52250 * 297.07795 * 25 14 13 47 47 H 1.08995 * 109.52240 * 176.88596 * 25 14 13 48 48 H 1.09003 * 109.48280 * 182.40752 * 26 25 14 49 49 H 1.09002 * 109.48971 * 62.37975 * 26 25 14 50 50 H 1.08996 * 109.49379 * 181.30938 * 28 10 9 51 51 H 1.08994 * 109.49581 * 301.40708 * 28 10 9 52 52 H 1.08999 * 109.58766 * 353.37877 * 29 7 5 53 53 H 1.08998 * 109.58326 * 113.79952 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2662 -0.0008 8 6 5.5154 4.6816 -0.0007 9 6 6.4780 4.9250 1.1659 10 6 7.6501 3.9459 1.0677 11 6 8.6311 4.2088 2.2120 12 1 8.1222 4.0708 3.1660 13 6 9.8049 3.2309 2.1130 14 6 10.8116 3.5395 3.2255 15 1 10.3418 3.3822 4.1964 16 7 11.9743 2.6578 3.0951 17 6 12.7454 2.3749 4.1908 18 1 12.4961 2.8015 5.1512 19 6 13.8473 1.5399 4.0671 20 7 14.1508 1.0197 2.8968 21 14 14.8987 1.1534 5.5620 22 1 14.3694 -0.0570 6.2400 23 1 16.2989 0.9076 5.1323 24 1 14.8640 2.3024 6.5020 25 6 11.2593 4.9993 3.1034 26 6 10.0293 5.9089 3.1640 27 8 9.1202 5.5485 2.1221 28 6 7.1272 2.5107 1.1640 29 6 6.1723 2.2399 -0.0030 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8332 0.9767 -0.8908 36 1 3.8340 0.9764 0.8892 37 1 4.6309 5.3074 0.1188 38 1 6.0120 4.9226 -0.9406 39 1 5.9532 4.7710 2.1087 40 1 6.8532 5.9473 1.1206 41 1 8.1594 4.0836 0.1139 42 1 9.4392 2.2103 2.2255 43 1 10.2892 3.3403 1.1427 44 1 12.1979 2.2744 2.2326 45 1 14.9207 0.4359 2.8104 46 1 11.7730 5.1445 2.1531 47 1 11.9337 5.2434 3.9241 48 1 10.3377 6.9464 3.0347 49 1 9.5388 5.7932 4.1306 50 1 7.9646 1.8146 1.1174 51 1 6.5964 2.3795 2.1069 52 1 5.7213 1.2545 0.1147 53 1 6.7222 2.2823 -0.9431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186064075.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -127.571299 kcal Electronic energy + Delta-G solvation = -30476.634178 eV Core-core repulsion = 26348.140013 eV Total energy + Delta-G solvation = -4128.494165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.60159 -39.40596 -38.19394 -37.18434 -35.07218 -33.91087 -32.32034 -32.04372 -31.35898 -30.05202 -29.25212 -28.04513 -25.67585 -24.14390 -23.60597 -23.17678 -22.62467 -22.00049 -20.57943 -19.82569 -19.16742 -17.69536 -17.18229 -16.93284 -16.81414 -16.08742 -15.93451 -15.71921 -15.34246 -14.62123 -14.56861 -14.39300 -14.34859 -13.97925 -13.76679 -13.63373 -13.52025 -13.19778 -13.02058 -12.88314 -12.84734 -12.73953 -12.44927 -12.23848 -11.80662 -11.63069 -11.50118 -11.44326 -11.09206 -10.98403 -10.92298 -10.85056 -10.67229 -10.60753 -10.32082 -10.17992 -10.09369 -9.91647 -9.83467 -9.73677 -9.16358 -8.92173 -8.88679 -7.01675 -5.82079 -3.11127 2.34066 2.41464 3.38961 3.44484 3.45546 3.45982 3.86406 4.21615 4.46401 4.50536 4.61246 4.62939 4.67636 4.77410 4.82838 4.84524 4.87604 4.95811 5.08792 5.10799 5.22953 5.27662 5.30808 5.32690 5.43462 5.45658 5.51837 5.52146 5.54055 5.63542 5.67953 5.72592 5.74805 5.75010 5.85316 5.91504 5.97581 6.01072 6.21405 6.27825 6.30417 6.38481 6.41943 6.58070 6.67506 6.79432 7.02722 7.10107 7.50968 7.64294 7.92012 8.36316 9.47628 10.04882 10.39939 11.40419 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002136 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.172090 B =13105.930655 C =14512.918769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.045 3.955 5 C 0.516 3.484 6 O -0.523 6.523 7 N -0.611 5.611 8 C 0.113 3.887 9 C -0.125 4.125 10 C -0.077 4.077 11 C 0.102 3.898 12 H 0.053 0.947 13 C -0.153 4.153 14 C 0.178 3.822 15 H 0.044 0.956 16 N -0.723 5.723 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.172 4.172 26 C 0.065 3.935 27 O -0.383 6.383 28 C -0.134 4.134 29 C 0.107 3.893 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.043 0.957 50 H 0.089 0.911 51 H 0.070 0.930 52 H 0.083 0.917 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.710 1.116 -7.361 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.035 4.035 5 C 0.303 3.697 6 O -0.398 6.398 7 N -0.347 5.347 8 C -0.009 4.009 9 C -0.163 4.163 10 C -0.095 4.095 11 C 0.043 3.957 12 H 0.071 0.929 13 C -0.191 4.191 14 C 0.067 3.933 15 H 0.062 0.938 16 N -0.363 5.363 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.212 4.212 26 C -0.012 4.012 27 O -0.302 6.302 28 C -0.172 4.172 29 C -0.016 4.016 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.089 0.911 52 H 0.102 0.898 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.276 1.819 -7.338 23.524 hybrid contribution 1.357 -0.885 0.823 1.817 sum -20.919 0.934 -6.515 21.930 Atomic orbital electron populations 1.21732 0.93341 1.02300 1.03459 1.22560 0.96035 0.83257 1.00306 1.88015 1.18493 1.26500 1.95434 1.22242 0.83946 0.94761 1.02546 1.20210 0.82240 0.90593 0.76616 1.90717 1.48882 1.51770 1.48473 1.48110 1.04998 1.07873 1.73687 1.21668 0.99410 0.80967 0.98837 1.21911 0.95408 1.00744 0.98221 1.21099 0.94872 0.94246 0.99323 1.22016 0.93407 0.82848 0.97394 0.92877 1.22530 0.96494 0.99193 1.00896 1.20204 0.88337 0.89119 0.95613 0.93762 1.42409 1.28986 1.54936 1.09959 1.19232 1.05445 1.23235 0.89183 0.91254 1.24743 0.99020 1.00367 0.96800 1.69657 1.29570 1.36611 1.22227 0.86205 0.79880 0.78131 0.82062 1.21713 1.21752 1.20783 1.22929 0.97322 0.98239 1.02746 1.22577 0.90088 0.98678 0.89860 1.87808 1.62601 1.29025 1.50778 1.22034 0.99415 0.97170 0.98542 1.21835 0.89270 0.90848 0.99654 0.91710 0.90902 0.91663 0.93128 0.93062 0.90253 0.90144 0.88984 0.91249 0.91716 0.89542 0.90071 0.90899 0.91328 0.78258 0.93492 0.91750 0.91291 0.89746 0.93909 0.89293 0.91123 0.89840 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.37 -3.98 9.88 -55.14 -0.54 -4.52 16 4 C 0.04 0.39 4.76 36.00 0.17 0.56 16 5 C 0.52 6.00 7.77 -10.99 -0.09 5.91 16 6 O -0.52 -8.33 15.91 -14.35 -0.23 -8.56 16 7 N -0.61 -5.89 2.97 -172.75 -0.51 -6.41 16 8 C 0.11 1.11 6.43 -3.70 -0.02 1.09 16 9 C -0.12 -1.25 5.23 -26.61 -0.14 -1.39 16 10 C -0.08 -0.80 1.95 -90.58 -0.18 -0.97 16 11 C 0.10 1.32 2.22 -26.68 -0.06 1.26 16 12 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 13 C -0.15 -2.35 4.47 -26.59 -0.12 -2.47 16 14 C 0.18 3.39 2.86 -67.75 -0.19 3.20 16 15 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 16 N -0.72 -17.57 5.13 -53.25 -0.27 -17.84 16 17 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.17 -3.01 5.72 -26.59 -0.15 -3.16 16 26 C 0.07 0.93 6.84 37.21 0.25 1.18 16 27 O -0.38 -5.50 9.71 -35.23 -0.34 -5.84 16 28 C -0.13 -1.17 5.05 -26.60 -0.13 -1.30 16 29 C 0.11 0.78 6.34 -3.70 -0.02 0.75 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.49 7.94 -51.93 -0.41 0.08 16 36 H 0.08 0.53 7.69 -51.93 -0.40 0.13 16 37 H 0.09 1.03 7.00 -51.93 -0.36 0.66 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.90 7.64 -51.93 -0.40 0.51 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.09 6.54 -51.93 -0.34 0.75 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.79 6.42 -51.93 -0.33 0.46 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 52 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 53 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 411.03 15.07 6.19 6.19 Total: -1.00 -33.54 411.03 -9.91 -43.45 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -9.60 Total: 5.83 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.30 Total: -2.40 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.06 Total: -51.14 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.11 Total: -18.93 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.54 -9.91 -43.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186064075.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.124 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds