Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42892 * 109.47073 * 2 1 4 4 C 1.42903 * 114.00229 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47626 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00064 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00193 * 180.02562 * 5 4 3 8 8 C 1.46931 * 120.63029 * 179.97438 * 7 5 4 9 9 C 1.53200 * 108.77279 * 126.41292 * 8 7 5 10 10 C 1.53039 * 109.31160 * 54.63574 * 9 8 7 11 11 C 1.53001 * 109.45758 * 178.62691 * 10 9 8 12 12 H 1.09001 * 109.47966 * 60.05156 * 11 10 9 13 13 C 1.53095 * 109.48058 * 180.08393 * 11 10 9 14 14 C 1.53173 * 109.16390 * 177.59289 * 13 11 10 15 15 H 1.08999 * 109.54522 * 62.88814 * 14 13 11 16 16 N 1.46501 * 109.61645 * 183.10920 * 14 13 11 17 17 C 1.36941 * 120.00157 * 204.60043 * 16 14 13 18 18 H 1.08001 * 119.99497 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99775 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00767 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99676 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47348 * 89.99815 * 21 19 17 23 23 H 1.48506 * 109.47182 * 209.99821 * 21 19 17 24 24 H 1.48494 * 109.47060 * 329.99581 * 21 19 17 25 25 C 1.53177 * 109.03777 * 303.02013 * 14 13 11 26 26 C 1.53093 * 109.16253 * 56.97859 * 25 14 13 27 27 O 1.42899 * 109.48279 * 300.02571 * 11 10 9 28 28 C 1.53046 * 109.52798 * 298.64112 * 10 9 8 29 29 C 1.46928 * 120.63179 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.47340 * 59.99939 * 1 2 3 31 31 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47215 * 299.99955 * 1 2 3 33 33 H 1.09003 * 109.46701 * 240.00071 * 2 1 3 34 34 H 1.08997 * 109.46970 * 120.00298 * 2 1 3 35 35 H 1.09000 * 109.47189 * 59.99705 * 4 3 2 36 36 H 1.09004 * 109.46912 * 300.00082 * 4 3 2 37 37 H 1.08998 * 109.58425 * 6.63242 * 8 7 5 38 38 H 1.08999 * 109.58795 * 246.19692 * 8 7 5 39 39 H 1.08997 * 109.49280 * 294.68615 * 9 8 7 40 40 H 1.08992 * 109.49396 * 174.58854 * 9 8 7 41 41 H 1.09002 * 109.46050 * 58.65698 * 10 9 8 42 42 H 1.08998 * 109.52426 * 297.50169 * 13 11 10 43 43 H 1.09000 * 109.51856 * 57.68446 * 13 11 10 44 44 H 0.97001 * 120.00060 * 24.59916 * 16 14 13 45 45 H 0.97002 * 120.00576 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.52250 * 297.07795 * 25 14 13 47 47 H 1.08995 * 109.52240 * 176.88596 * 25 14 13 48 48 H 1.09003 * 109.48280 * 182.40752 * 26 25 14 49 49 H 1.09002 * 109.48971 * 62.37975 * 26 25 14 50 50 H 1.08996 * 109.49379 * 181.30938 * 28 10 9 51 51 H 1.08994 * 109.49581 * 301.40708 * 28 10 9 52 52 H 1.08999 * 109.58766 * 353.37877 * 29 7 5 53 53 H 1.08998 * 109.58326 * 113.79952 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2662 -0.0008 8 6 5.5154 4.6816 -0.0007 9 6 6.4780 4.9250 1.1659 10 6 7.6501 3.9459 1.0677 11 6 8.6311 4.2088 2.2120 12 1 8.1222 4.0708 3.1660 13 6 9.8049 3.2309 2.1130 14 6 10.8116 3.5395 3.2255 15 1 10.3418 3.3822 4.1964 16 7 11.9743 2.6578 3.0951 17 6 12.7454 2.3749 4.1908 18 1 12.4961 2.8015 5.1512 19 6 13.8473 1.5399 4.0671 20 7 14.1508 1.0197 2.8968 21 14 14.8987 1.1534 5.5620 22 1 14.3694 -0.0570 6.2400 23 1 16.2989 0.9076 5.1323 24 1 14.8640 2.3024 6.5020 25 6 11.2593 4.9993 3.1034 26 6 10.0293 5.9089 3.1640 27 8 9.1202 5.5485 2.1221 28 6 7.1272 2.5107 1.1640 29 6 6.1723 2.2399 -0.0030 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8332 0.9767 -0.8908 36 1 3.8340 0.9764 0.8892 37 1 4.6309 5.3074 0.1188 38 1 6.0120 4.9226 -0.9406 39 1 5.9532 4.7710 2.1087 40 1 6.8532 5.9473 1.1206 41 1 8.1594 4.0836 0.1139 42 1 9.4392 2.2103 2.2255 43 1 10.2892 3.3403 1.1427 44 1 12.1979 2.2744 2.2326 45 1 14.9207 0.4359 2.8104 46 1 11.7730 5.1445 2.1531 47 1 11.9337 5.2434 3.9241 48 1 10.3377 6.9464 3.0347 49 1 9.5388 5.7932 4.1306 50 1 7.9646 1.8146 1.1174 51 1 6.5964 2.3795 2.1069 52 1 5.7213 1.2545 0.1147 53 1 6.7222 2.2823 -0.9431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186064075.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -148.740374 kcal Electronic energy + Delta-G solvation = -30477.552138 eV Core-core repulsion = 26348.140013 eV Total energy + Delta-G solvation = -4129.412125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -41.44804 -40.51842 -38.93215 -38.08955 -36.73066 -34.84667 -34.07332 -32.77141 -32.04511 -31.24441 -30.88261 -28.79828 -26.86194 -25.64281 -24.68312 -23.79889 -23.62922 -23.16752 -21.49351 -21.18431 -20.02740 -19.17647 -18.44176 -17.63957 -17.46612 -17.20282 -17.00266 -16.68191 -16.44571 -16.06859 -15.70222 -15.47924 -15.30006 -15.19619 -14.87804 -14.70522 -14.65838 -14.30119 -14.12723 -13.85421 -13.70935 -13.56029 -13.31636 -13.12099 -12.96148 -12.86717 -12.60117 -12.33273 -12.28501 -12.22706 -12.19080 -12.15431 -11.98836 -11.91635 -11.77221 -11.51493 -11.41894 -11.03590 -10.87920 -10.77131 -10.66922 -10.39157 -9.70062 -9.01615 -7.95061 -5.23484 1.46786 1.47584 1.51332 1.55894 1.71228 2.54729 2.80556 2.87598 3.37533 3.52095 3.56896 3.79007 3.93102 3.98207 4.04569 4.12068 4.13518 4.15649 4.19557 4.24820 4.28649 4.30543 4.35395 4.39850 4.43867 4.51426 4.52054 4.58664 4.65728 4.78569 4.79140 4.83655 4.87439 4.88535 4.91627 4.98333 5.03351 5.04558 5.11191 5.17721 5.24512 5.27170 5.36253 5.46066 5.48787 5.54315 5.56696 6.09794 6.26988 6.35761 6.37117 7.10484 7.33323 8.08950 8.32693 9.28104 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002136 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.172090 B =13105.930655 C =14512.918769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.403 6.403 4 C 0.045 3.955 5 C 0.509 3.491 6 O -0.578 6.578 7 N -0.606 5.606 8 C 0.114 3.886 9 C -0.114 4.114 10 C -0.071 4.071 11 C 0.106 3.894 12 H 0.057 0.943 13 C -0.140 4.140 14 C 0.168 3.832 15 H 0.040 0.960 16 N -0.735 5.735 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.969 3.031 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.272 1.272 25 C -0.164 4.164 26 C 0.072 3.928 27 O -0.387 6.387 28 C -0.131 4.131 29 C 0.106 3.894 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.105 0.895 49 H 0.055 0.945 50 H 0.091 0.909 51 H 0.070 0.930 52 H 0.111 0.889 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.382 0.366 -7.175 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.323 6.323 4 C -0.034 4.034 5 C 0.298 3.702 6 O -0.458 6.458 7 N -0.340 5.340 8 C -0.009 4.009 9 C -0.153 4.153 10 C -0.089 4.089 11 C 0.048 3.952 12 H 0.075 0.925 13 C -0.179 4.179 14 C 0.060 3.940 15 H 0.058 0.942 16 N -0.374 5.374 17 C -0.371 4.371 18 H 0.091 0.909 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.197 1.197 25 C -0.205 4.205 26 C -0.005 4.005 27 O -0.306 6.306 28 C -0.169 4.169 29 C -0.016 4.016 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.123 0.877 49 H 0.073 0.927 50 H 0.109 0.891 51 H 0.088 0.912 52 H 0.129 0.871 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.958 1.084 -7.135 24.065 hybrid contribution 1.543 -0.611 0.770 1.830 sum -21.414 0.473 -6.364 22.345 Atomic orbital electron populations 1.21781 0.93350 1.03452 1.02389 1.22776 0.96171 0.81984 1.01778 1.87978 1.19785 1.28763 1.95770 1.22386 0.83389 0.92639 1.04963 1.20879 0.82157 0.91665 0.75537 1.90689 1.50417 1.53450 1.51204 1.48204 1.05120 1.08208 1.72499 1.21614 0.98630 0.81318 0.99295 1.21787 0.95085 1.00455 0.97925 1.21071 0.94214 0.95541 0.98121 1.22076 0.92719 0.81606 0.98832 0.92479 1.22405 0.96290 1.00358 0.98821 1.20475 0.87536 0.89131 0.96852 0.94212 1.42601 1.30204 1.55837 1.08756 1.19584 1.05355 1.22098 0.90024 0.90902 1.25515 1.00686 1.01137 0.99395 1.69805 1.30128 1.37787 1.24138 0.85200 0.77729 0.78108 0.79094 1.21335 1.22350 1.19660 1.22769 0.98584 0.97863 1.01240 1.22559 0.88546 0.98850 0.90567 1.87827 1.62322 1.29596 1.50879 1.22016 0.99756 0.95819 0.99293 1.22041 0.88522 0.91372 0.99631 0.92680 0.88619 0.92842 0.91404 0.91674 0.87334 0.87755 0.90735 0.90027 0.92428 0.89903 0.89998 0.90287 0.92114 0.79549 0.94061 0.93279 0.92793 0.87681 0.92686 0.89079 0.91160 0.87055 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.40 -8.30 9.88 -129.95 -1.28 -9.58 16 4 C 0.05 0.67 4.76 71.23 0.34 1.01 16 5 C 0.51 11.26 7.77 87.66 0.68 11.94 16 6 O -0.58 -18.73 15.91 16.00 0.25 -18.48 16 7 N -0.61 -10.58 2.97 -818.86 -2.43 -13.01 16 8 C 0.11 2.12 6.43 86.36 0.56 2.68 16 9 C -0.11 -2.13 5.23 30.67 0.16 -1.97 16 10 C -0.07 -1.33 1.95 -10.76 -0.02 -1.35 16 11 C 0.11 2.56 2.22 30.63 0.07 2.63 16 12 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 13 C -0.14 -4.17 4.47 30.68 0.14 -4.04 16 14 C 0.17 6.36 2.86 45.11 0.13 6.49 16 15 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 16 N -0.73 -35.96 5.13 -322.38 -1.65 -37.61 16 17 C -0.24 -12.96 9.93 84.03 0.83 -12.12 16 18 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 19 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 20 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 21 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C -0.16 -5.67 5.72 30.68 0.18 -5.49 16 26 C 0.07 1.92 6.84 72.01 0.49 2.41 16 27 O -0.39 -10.38 9.71 -148.98 -1.45 -11.83 16 28 C -0.13 -1.94 5.05 30.68 0.15 -1.78 16 29 C 0.11 1.21 6.34 86.37 0.55 1.75 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.11 0.94 7.94 -2.39 -0.02 0.92 16 36 H 0.10 1.02 7.69 -2.39 -0.02 1.00 16 37 H 0.07 1.69 7.00 -2.39 -0.02 1.67 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.62 7.64 -2.39 -0.02 1.60 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 2.25 6.54 -2.39 -0.02 2.23 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.37 19.62 7.80 -92.71 -0.72 18.90 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.09 1.36 6.42 -2.39 -0.02 1.35 16 51 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.11 0.69 5.93 -2.39 -0.01 0.67 16 53 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.14 411.03 1.85 -72.29 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.16 Total: 30.21 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.94 Total: -1.56 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.80 Total: -108.43 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.48 Total: -39.89 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.14 1.85 -72.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186064075.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.449 kcal (2) G-P(sol) polarization free energy of solvation -74.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.78 seconds