Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47387 * 2 1 4 4 C 1.42899 * 113.99865 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46712 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00103 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99628 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.62561 * 180.02562 * 7 5 4 9 9 C 1.53187 * 108.77589 * 233.58692 * 8 7 5 10 10 C 1.53039 * 109.31324 * 305.37082 * 9 8 7 11 11 C 1.53006 * 109.45893 * 181.38464 * 10 9 8 12 12 H 1.08994 * 109.47931 * 300.01602 * 11 10 9 13 13 O 1.42898 * 109.48178 * 60.05674 * 11 10 9 14 14 C 1.42899 * 114.09702 * 181.14250 * 13 11 10 15 15 C 1.53097 * 109.41523 * 298.83731 * 14 13 11 16 16 C 1.53181 * 109.16196 * 57.60605 * 15 14 13 17 17 C 1.53100 * 109.47826 * 179.97438 * 11 10 9 18 18 H 1.08999 * 109.51974 * 62.43837 * 17 11 10 19 19 N 1.46506 * 109.52049 * 302.31458 * 17 11 10 20 20 C 1.36929 * 119.99807 * 155.00009 * 19 17 11 21 21 H 1.08004 * 120.00341 * 0.27647 * 20 19 17 22 22 C 1.38815 * 120.00031 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46793 * 120.00365 * 24 22 20 27 27 H 1.48500 * 109.47000 * 240.00457 * 24 22 20 28 28 C 1.53032 * 109.54080 * 61.36339 * 10 9 8 29 29 C 1.46922 * 120.63179 * 359.97438 * 7 5 4 30 30 H 1.09009 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47004 * 299.99930 * 1 2 3 32 32 H 1.08993 * 109.47131 * 59.99949 * 1 2 3 33 33 H 1.09005 * 109.47077 * 239.99639 * 2 1 3 34 34 H 1.09007 * 109.47321 * 120.00237 * 2 1 3 35 35 H 1.09000 * 109.47274 * 60.00118 * 4 3 2 36 36 H 1.09001 * 109.47351 * 299.99663 * 4 3 2 37 37 H 1.09004 * 109.58565 * 113.80335 * 8 7 5 38 38 H 1.08996 * 109.58995 * 353.37762 * 8 7 5 39 39 H 1.08997 * 109.50390 * 185.41612 * 9 8 7 40 40 H 1.09009 * 109.49969 * 65.31597 * 9 8 7 41 41 H 1.08998 * 109.45844 * 301.35294 * 10 9 8 42 42 H 1.08996 * 109.48637 * 58.81999 * 14 13 11 43 43 H 1.09005 * 109.48247 * 178.86111 * 14 13 11 44 44 H 1.08992 * 109.52650 * 177.51462 * 15 14 13 45 45 H 1.09000 * 109.52123 * 297.64248 * 15 14 13 46 46 H 1.08995 * 109.54271 * 183.15231 * 16 15 14 47 47 H 1.09006 * 109.53571 * 62.88946 * 16 15 14 48 48 H 0.96999 * 120.00076 * 335.00072 * 19 17 11 49 49 H 0.97000 * 120.00284 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.50121 * 58.58767 * 28 10 9 51 51 H 1.09000 * 109.50220 * 178.68682 * 28 10 9 52 52 H 1.08998 * 109.58647 * 246.19896 * 29 7 5 53 53 H 1.09001 * 109.58847 * 6.62938 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 -0.0012 6 8 2.9610 3.7729 -0.0006 7 7 5.1210 3.2662 -0.0013 8 6 5.5154 4.6815 -0.0013 9 6 6.4771 4.9254 -1.1685 10 6 7.6492 3.9462 -1.0717 11 6 8.6294 4.2098 -2.2166 12 1 8.1196 4.0735 -3.1702 13 8 9.1200 5.5488 -2.1252 14 6 10.0285 5.9097 -3.1675 15 6 11.2576 4.9987 -3.1093 16 6 10.8082 3.5395 -3.2331 17 6 9.8025 3.2308 -2.1198 18 1 9.4357 2.2105 -2.2322 19 7 10.4548 3.3757 -0.8161 20 6 11.1578 2.3290 -0.2821 21 1 11.2352 1.3980 -0.8241 22 6 11.7764 2.4665 0.9530 23 7 11.6867 3.6028 1.6110 24 14 12.7361 1.0387 1.6810 25 1 12.6858 -0.1173 0.7504 26 1 14.1490 1.4462 1.8876 27 1 12.1367 0.6525 2.9836 28 6 7.1265 2.5111 -1.1682 29 6 6.1723 2.2398 -0.0002 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8333 0.9766 -0.8908 36 1 3.8341 0.9764 0.8892 37 1 6.0129 4.9222 0.9383 38 1 4.6310 5.3074 -0.1196 39 1 6.8524 5.9477 -1.1233 40 1 5.9515 4.7716 -2.1111 41 1 8.1592 4.0834 -0.1182 42 1 9.5372 5.7958 -4.1337 43 1 10.3383 6.9466 -3.0368 44 1 11.9315 5.2432 -3.9303 45 1 11.7731 5.1427 -2.1597 46 1 11.6724 2.8824 -3.1363 47 1 10.3373 3.3843 -4.2038 48 1 10.3887 4.2132 -0.3311 49 1 12.1186 3.6988 2.4743 50 1 6.5949 2.3801 -2.1107 51 1 7.9641 1.8150 -1.1227 52 1 6.7231 2.2818 0.9394 53 1 5.7212 1.2545 -0.1180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186106173.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -142.393835 kcal Electronic energy + Delta-G solvation = -31662.850281 eV Core-core repulsion = 27533.713362 eV Total energy + Delta-G solvation = -4129.136919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.45956 -40.56261 -38.89343 -38.01191 -36.27972 -34.74390 -34.03107 -32.76193 -32.08694 -31.90084 -29.98434 -28.68817 -26.70710 -25.83674 -24.62177 -23.99015 -23.67502 -23.35886 -21.51554 -20.32279 -20.00706 -19.16869 -18.43429 -17.62442 -17.44585 -17.09452 -16.92833 -16.66620 -16.38540 -16.06488 -15.70348 -15.53812 -15.27941 -15.04017 -14.84972 -14.62476 -14.48518 -14.30532 -13.81009 -13.70798 -13.69782 -13.45915 -13.32363 -13.21538 -13.05037 -12.87374 -12.58640 -12.33672 -12.31590 -12.17995 -12.14401 -12.05409 -11.97184 -11.73201 -11.60429 -11.48782 -11.38339 -10.89906 -10.81396 -10.76456 -10.66175 -10.13872 -9.69653 -8.84387 -7.83248 -5.08477 1.49154 1.51026 1.51570 1.59143 1.70817 2.61405 2.84814 2.94982 3.49474 3.52491 3.73672 3.84395 4.00719 4.05666 4.12599 4.14724 4.16470 4.20441 4.22345 4.28533 4.28849 4.33762 4.36470 4.44120 4.46120 4.52214 4.60116 4.63214 4.71711 4.79379 4.81495 4.84801 4.90954 4.93807 4.98723 5.04234 5.04603 5.12797 5.16012 5.24080 5.26235 5.28126 5.46292 5.54527 5.57536 5.61796 5.65800 6.10692 6.36492 6.38032 6.51985 7.09742 7.45423 8.24846 8.48347 9.40016 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003120 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.930224 B = 8971.594717 C =10537.564458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.047 3.953 5 C 0.510 3.490 6 O -0.577 6.577 7 N -0.603 5.603 8 C 0.114 3.886 9 C -0.110 4.110 10 C -0.068 4.068 11 C 0.099 3.901 12 H 0.073 0.927 13 O -0.394 6.394 14 C 0.066 3.934 15 C -0.144 4.144 16 C -0.137 4.137 17 C 0.141 3.859 18 H 0.062 0.938 19 N -0.716 5.716 20 C -0.218 4.218 21 H 0.074 0.926 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.959 3.041 25 H -0.265 1.265 26 H -0.305 1.305 27 H -0.298 1.298 28 C -0.119 4.119 29 C 0.109 3.891 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.374 0.626 49 H 0.245 0.755 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.066 0.934 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 -6.259 -9.752 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.321 6.321 4 C -0.032 4.032 5 C 0.299 3.701 6 O -0.457 6.457 7 N -0.337 5.337 8 C -0.009 4.009 9 C -0.148 4.148 10 C -0.087 4.087 11 C 0.041 3.959 12 H 0.090 0.910 13 O -0.313 6.313 14 C -0.011 4.011 15 C -0.182 4.182 16 C -0.178 4.178 17 C 0.032 3.968 18 H 0.080 0.920 19 N -0.356 5.356 20 C -0.350 4.350 21 H 0.092 0.908 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.233 1.233 27 H -0.226 1.226 28 C -0.157 4.157 29 C -0.013 4.013 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.207 0.793 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.085 0.915 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.462 -5.729 -9.599 19.080 hybrid contribution 1.517 -0.364 0.890 1.796 sum -13.945 -6.093 -8.709 17.533 Atomic orbital electron populations 1.21776 0.93199 1.03481 1.02411 1.22797 0.96259 0.81977 1.01785 1.87977 1.19560 1.28815 1.95769 1.22350 0.83460 0.92405 1.04958 1.20893 0.81873 0.91823 0.75531 1.90674 1.50218 1.53449 1.51360 1.48168 1.05204 1.07936 1.72355 1.21560 0.98675 0.81598 0.99017 1.21769 0.95037 1.00159 0.97876 1.20909 0.93972 0.95429 0.98347 1.22356 0.93144 0.82117 0.98256 0.90965 1.87877 1.62462 1.29670 1.51313 1.22604 0.89121 0.98651 0.90686 1.21978 0.98693 0.96156 1.01393 1.22179 1.00137 0.96196 0.99249 1.21112 0.92031 0.97748 0.85874 0.91990 1.42395 1.60891 1.14071 1.18194 1.19567 1.22412 0.93510 0.99497 0.90766 1.25351 1.03558 0.98920 0.98840 1.69836 1.50647 1.26023 1.15431 0.85275 0.77682 0.79884 0.78164 1.18950 1.23336 1.22562 1.21872 0.99054 0.95893 0.98867 1.21945 0.88537 0.91463 0.99375 0.88527 0.92832 0.92646 0.91395 0.91703 0.87290 0.87859 0.91868 0.90142 0.90624 0.91304 0.92502 0.91579 0.88773 0.90442 0.94277 0.93858 0.90648 0.79350 0.94624 0.90018 0.90083 0.91537 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.40 -9.51 9.88 -129.94 -1.28 -10.80 16 4 C 0.05 0.91 4.76 71.24 0.34 1.25 16 5 C 0.51 14.05 7.78 87.66 0.68 14.73 16 6 O -0.58 -21.31 15.91 16.00 0.25 -21.06 16 7 N -0.60 -15.21 2.97 -818.80 -2.43 -17.64 16 8 C 0.11 3.14 6.43 86.36 0.56 3.69 16 9 C -0.11 -2.92 5.23 30.67 0.16 -2.76 16 10 C -0.07 -1.98 1.77 -10.77 -0.02 -2.00 16 11 C 0.10 2.97 1.92 30.63 0.06 3.02 16 12 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 13 O -0.39 -13.01 9.32 -148.98 -1.39 -14.39 16 14 C 0.07 1.81 6.84 72.01 0.49 2.31 16 15 C -0.14 -4.53 5.96 30.69 0.18 -4.35 16 16 C -0.14 -4.38 5.70 30.71 0.18 -4.20 16 17 C 0.14 4.90 2.18 45.08 0.10 4.99 16 18 H 0.06 2.07 6.48 -2.39 -0.02 2.05 16 19 N -0.72 -32.61 3.77 -322.51 -1.22 -33.83 16 20 C -0.22 -11.07 9.93 84.04 0.83 -10.24 16 21 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 23 N -0.97 -57.65 13.06 21.65 0.28 -57.37 16 24 Si 0.96 44.57 29.55 68.60 2.03 46.60 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 C -0.12 -2.82 5.05 30.69 0.15 -2.66 16 29 C 0.11 2.34 6.34 86.38 0.55 2.88 16 30 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.11 1.43 7.69 -2.39 -0.02 1.42 16 36 H 0.10 1.48 7.94 -2.39 -0.02 1.47 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.37 7.01 -2.39 -0.02 2.35 16 39 H 0.08 2.13 7.64 -2.39 -0.02 2.11 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.06 2.16 7.30 -2.39 -0.02 2.14 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.04 1.57 7.76 -2.39 -0.02 1.55 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 48 H 0.37 19.47 7.13 -92.71 -0.66 18.81 16 49 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 50 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 51 H 0.08 2.15 6.42 -2.39 -0.02 2.13 16 52 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 53 H 0.12 1.64 5.93 -2.39 -0.01 1.63 16 Total: -1.00 -71.42 407.70 2.41 -69.00 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.22 Total: 36.57 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.95 Total: 2.92 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -3.37 Total: -108.84 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -2.42 Total: -46.25 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -71.42 2.41 -69.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186106173.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.392 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds