Wall clock time and date at job start Sat Apr 11 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47387 * 329.99933 * 4 3 2 6 6 C 1.52996 * 109.47294 * 89.99893 * 4 3 2 7 7 C 1.50706 * 109.47501 * 210.00220 * 4 3 2 8 8 O 1.21274 * 119.99411 * 359.97438 * 7 4 3 9 9 N 1.34774 * 120.00012 * 180.02562 * 7 4 3 10 10 C 1.48188 * 127.80283 * 0.02562 * 9 7 4 11 11 C 1.54513 * 104.63592 * 219.26301 * 10 9 7 12 12 H 1.09001 * 110.37250 * 95.05190 * 11 10 9 13 13 C 1.53005 * 110.37583 * 217.39527 * 11 10 9 14 14 N 1.46498 * 109.47514 * 293.54671 * 13 11 10 15 15 C 1.36935 * 120.00020 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00086 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99683 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99794 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99460 * 19 17 15 21 21 H 1.48507 * 109.47284 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47010 * 299.99503 * 19 17 15 23 23 C 1.53771 * 104.78300 * 336.22494 * 11 10 9 24 24 C 1.48256 * 127.79619 * 179.70713 * 9 7 4 25 25 C 1.52592 * 110.28564 * 241.19438 * 23 11 10 26 26 C 1.53197 * 109.20125 * 182.29581 * 25 23 11 27 27 O 1.42908 * 109.34432 * 56.66998 * 26 25 23 28 28 C 1.42916 * 114.22054 * 298.39377 * 27 26 25 29 29 C 1.52594 * 110.26937 * 119.03399 * 23 11 10 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 35 35 H 1.09003 * 109.47337 * 59.99910 * 6 4 3 36 36 H 1.09004 * 109.47410 * 180.02562 * 6 4 3 37 37 H 1.09005 * 109.47341 * 300.00407 * 6 4 3 38 38 H 1.09002 * 110.40513 * 338.06085 * 10 9 7 39 39 H 1.09009 * 110.40155 * 100.36286 * 10 9 7 40 40 H 1.08993 * 109.47112 * 53.55229 * 13 11 10 41 41 H 1.09004 * 109.46626 * 173.55103 * 13 11 10 42 42 H 0.97000 * 119.99500 * 0.02562 * 14 13 11 43 43 H 0.96999 * 120.00289 * 179.97438 * 18 17 15 44 44 H 1.09006 * 110.42666 * 259.63786 * 24 9 7 45 45 H 1.09000 * 110.43282 * 22.12179 * 24 9 7 46 46 H 1.08993 * 109.51439 * 302.21649 * 25 23 11 47 47 H 1.09003 * 109.51308 * 62.37654 * 25 23 11 48 48 H 1.09004 * 109.49253 * 296.70996 * 26 25 23 49 49 H 1.08998 * 109.51649 * 176.64554 * 26 25 23 50 50 H 1.09010 * 109.49505 * 301.65698 * 28 27 26 51 51 H 1.09002 * 109.51684 * 181.58990 * 28 27 26 52 52 H 1.09004 * 109.51408 * 297.63963 * 29 23 11 53 53 H 1.09003 * 109.51651 * 57.81104 * 29 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8632 0.6017 0.5148 6 6 3.9399 1.5002 -1.4417 7 6 3.8342 2.7266 0.7110 8 8 2.9853 3.4604 1.1711 9 7 5.1382 3.0440 0.8342 10 6 6.3092 2.2814 0.3411 11 6 7.3631 2.4157 1.4630 12 1 7.3167 1.5565 2.1321 13 6 8.7646 2.5509 0.8641 14 7 9.1308 1.3021 0.1914 15 6 10.3494 1.1869 -0.4224 16 1 11.0408 2.0165 -0.4103 17 6 10.6962 0.0037 -1.0602 18 7 9.8538 -1.0075 -1.0746 19 14 12.3588 -0.1537 -1.8969 20 1 13.4376 0.0436 -0.8956 21 1 12.4841 -1.5055 -2.4989 22 1 12.4769 0.8754 -2.9610 23 6 6.9755 3.7005 2.2138 24 6 5.7248 4.2384 1.4879 25 6 8.1063 4.7218 2.1335 26 6 7.7181 5.9676 2.9362 27 8 7.4208 5.5898 4.2820 28 6 6.3211 4.6857 4.4079 29 6 6.6482 3.3835 3.6701 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.5076 2.3586 -1.9559 36 1 5.0265 1.5859 -1.4412 37 1 3.6481 0.5842 -1.9555 38 1 6.0452 1.2346 0.1910 39 1 6.6820 2.7153 -0.5868 40 1 8.7743 3.3683 0.1431 41 1 9.4808 2.7590 1.6590 42 1 8.5100 0.5568 0.1808 43 1 10.0960 -1.8342 -1.5206 44 1 6.0054 4.9815 0.7413 45 1 5.0218 4.6641 2.2040 46 1 9.0169 4.2902 2.5487 47 1 8.2748 4.9973 1.0924 48 1 6.8402 6.4313 2.4862 49 1 8.5462 6.6763 2.9318 50 1 5.4285 5.1357 3.9732 51 1 6.1442 4.4720 5.4620 52 1 5.7883 2.7149 3.7128 53 1 7.5069 2.9043 4.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186273812.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:44 Heat of formation + Delta-G solvation = -132.686716 kcal Electronic energy + Delta-G solvation = -32011.232597 eV Core-core repulsion = 27882.516610 eV Total energy + Delta-G solvation = -4128.715986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.11685 -40.55325 -38.87183 -38.30093 -36.36460 -34.86493 -33.48825 -33.11970 -32.13258 -31.13725 -30.77996 -28.09026 -27.13297 -26.03653 -24.99929 -24.71025 -23.69488 -23.55485 -21.85630 -20.63634 -19.71439 -18.97048 -18.39193 -17.84930 -17.12885 -17.10439 -16.87305 -16.72448 -16.59113 -16.33735 -15.89682 -15.59943 -15.43640 -15.19080 -15.15538 -14.67556 -14.39194 -14.22759 -13.81655 -13.78062 -13.60780 -13.38464 -13.20302 -13.18332 -13.06480 -12.94625 -12.85873 -12.72149 -12.50594 -12.35481 -12.28066 -12.21253 -12.12221 -12.06614 -11.85556 -11.65119 -11.24151 -11.10705 -11.04110 -10.79778 -10.54569 -10.36481 -9.85922 -8.91980 -7.90145 -5.17052 1.41641 1.51961 1.52802 1.58387 1.58668 2.59795 2.73551 2.98895 3.23145 3.40514 3.45444 3.53363 3.58601 3.82354 3.91943 3.99407 4.06657 4.08737 4.15604 4.17280 4.20267 4.28376 4.29922 4.38935 4.44259 4.45371 4.54356 4.57764 4.62916 4.67044 4.69907 4.73106 4.81277 4.81859 4.86018 4.89038 4.98765 4.99273 5.03907 5.11161 5.12992 5.17395 5.19580 5.24519 5.40987 5.44111 5.56772 6.06418 6.28900 6.32401 6.38339 6.99252 7.40340 8.15384 8.38616 9.32736 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007274 B = 0.004158 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3848.606017 B = 6731.663651 C =10011.049899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.386 6.386 4 C 0.077 3.923 5 H 0.101 0.899 6 C -0.170 4.170 7 C 0.534 3.466 8 O -0.569 6.569 9 N -0.614 5.614 10 C 0.112 3.888 11 C -0.089 4.089 12 H 0.077 0.923 13 C 0.167 3.833 14 N -0.742 5.742 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.068 4.068 18 N -0.965 5.965 19 Si 0.964 3.036 20 H -0.282 1.282 21 H -0.298 1.298 22 H -0.279 1.279 23 C -0.055 4.055 24 C 0.113 3.887 25 C -0.142 4.142 26 C 0.058 3.942 27 O -0.398 6.398 28 C 0.061 3.939 29 C -0.135 4.135 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.058 0.942 49 H 0.108 0.892 50 H 0.053 0.947 51 H 0.105 0.895 52 H 0.069 0.931 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 7.556 5.363 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.305 6.305 4 C 0.016 3.984 5 H 0.119 0.881 6 C -0.228 4.228 7 C 0.323 3.677 8 O -0.448 6.448 9 N -0.347 5.347 10 C -0.010 4.010 11 C -0.109 4.109 12 H 0.096 0.904 13 C 0.040 3.960 14 N -0.385 5.385 15 C -0.372 4.372 16 H 0.092 0.908 17 C -0.261 4.261 18 N -0.616 5.616 19 Si 0.793 3.207 20 H -0.208 1.208 21 H -0.225 1.225 22 H -0.205 1.205 23 C -0.056 4.056 24 C -0.009 4.009 25 C -0.180 4.180 26 C -0.018 4.018 27 O -0.317 6.317 28 C -0.016 4.016 29 C -0.173 4.173 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.126 0.874 50 H 0.071 0.929 51 H 0.123 0.877 52 H 0.087 0.913 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.048 8.203 5.692 16.430 hybrid contribution 0.787 -1.083 -0.799 1.559 sum -12.261 7.120 4.893 14.999 Atomic orbital electron populations 1.21749 0.92483 1.03557 1.02634 1.22858 0.96740 0.82231 1.01311 1.87989 1.18765 1.28586 1.95146 1.21829 0.83527 0.95524 0.97506 0.88125 1.22314 1.02475 1.04104 0.93864 1.20425 0.80518 0.87530 0.79205 1.90667 1.50204 1.53439 1.50485 1.48958 1.04332 1.24795 1.56657 1.22613 0.83987 0.97145 0.97233 1.22154 0.94369 0.97942 0.96392 0.90437 1.20925 0.92454 0.88389 0.94184 1.42539 1.17505 1.13426 1.65067 1.19528 0.94104 0.97985 1.25612 0.90776 1.25398 1.01331 0.96394 1.02999 1.69764 1.37243 1.04453 1.50097 0.85363 0.80506 0.76262 0.78519 1.20840 1.22463 1.20530 1.21066 0.94676 0.94860 0.95029 1.22651 0.93834 0.87707 0.96696 1.22272 0.97830 0.95692 1.02180 1.22783 1.01338 0.95820 0.81902 1.87896 1.51882 1.64399 1.27546 1.22694 0.88663 0.88585 1.01615 1.22097 1.02353 0.98684 0.94137 0.88603 0.92117 0.92717 0.92531 0.91637 0.91992 0.90124 0.89617 0.89717 0.90176 0.94986 0.95556 0.79288 0.94136 0.89751 0.90265 0.90641 0.89343 0.92352 0.87358 0.92908 0.87715 0.91256 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.04 0.87 6.47 71.98 0.47 1.33 16 3 O -0.39 -10.56 9.52 -129.94 -1.24 -11.80 16 4 C 0.08 1.96 2.47 29.85 0.07 2.03 16 5 H 0.10 2.23 7.60 -2.38 -0.02 2.22 16 6 C -0.17 -3.83 9.28 71.98 0.67 -3.16 16 7 C 0.53 16.08 7.34 87.66 0.64 16.72 16 8 O -0.57 -21.34 16.77 16.03 0.27 -21.07 16 9 N -0.61 -16.11 3.31 -807.49 -2.67 -18.78 16 10 C 0.11 2.96 4.47 86.57 0.39 3.35 16 11 C -0.09 -2.43 2.78 -10.02 -0.03 -2.46 16 12 H 0.08 2.26 7.70 -2.39 -0.02 2.25 16 13 C 0.17 5.65 4.39 86.38 0.38 6.03 16 14 N -0.74 -33.52 5.44 -343.45 -1.87 -35.39 16 15 C -0.24 -12.40 9.99 84.03 0.84 -11.56 16 16 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 17 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 18 N -0.96 -55.31 13.06 21.65 0.28 -55.03 16 19 Si 0.96 43.93 29.55 68.60 2.03 45.95 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 C -0.05 -1.25 0.69 -51.75 -0.04 -1.28 16 24 C 0.11 2.66 5.12 86.48 0.44 3.10 16 25 C -0.14 -2.99 3.63 30.52 0.11 -2.88 16 26 C 0.06 1.09 6.65 72.05 0.48 1.57 16 27 O -0.40 -9.04 10.75 -148.98 -1.60 -10.64 16 28 C 0.06 1.23 6.64 72.05 0.48 1.71 16 29 C -0.13 -2.96 4.68 30.53 0.14 -2.82 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 34 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.85 5.33 -2.38 -0.01 1.84 16 37 H 0.08 1.66 7.87 -2.38 -0.02 1.64 16 38 H 0.08 2.22 6.58 -2.39 -0.02 2.20 16 39 H 0.08 2.21 7.66 -2.38 -0.02 2.20 16 40 H 0.03 1.07 6.88 -2.39 -0.02 1.05 16 41 H 0.03 0.93 6.62 -2.39 -0.02 0.91 16 42 H 0.38 17.91 7.52 -92.71 -0.70 17.21 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.08 1.82 7.78 -2.38 -0.02 1.80 16 45 H 0.08 1.96 5.95 -2.39 -0.01 1.95 16 46 H 0.07 1.79 6.60 -2.39 -0.02 1.77 16 47 H 0.09 1.77 6.87 -2.39 -0.02 1.76 16 48 H 0.06 0.99 7.54 -2.38 -0.02 0.97 16 49 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.05 1.05 6.53 -2.38 -0.02 1.04 16 51 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.14 402.36 1.66 -65.48 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.20 Total: 34.49 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.25 Total: 6.78 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.26 Total: -109.19 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -2.57 Total: -43.51 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.14 1.66 -65.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186273812.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.212 kcal (2) G-P(sol) polarization free energy of solvation -67.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds