Wall clock time and date at job start Sat Apr 11 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46964 * 2 1 4 4 C 1.42904 * 113.99353 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46625 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.47085 * 65.00180 * 5 4 3 7 7 C 1.42903 * 113.99838 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46726 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47466 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00011 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.47347 * 125.52315 * 359.69401 * 12 10 9 14 14 C 1.55160 * 104.79863 * 156.68541 * 13 12 10 15 15 C 1.54788 * 101.35593 * 37.54357 * 14 13 12 16 16 H 1.08999 * 113.40536 * 85.63693 * 15 14 13 17 17 C 1.53511 * 109.69001 * 212.75830 * 15 14 13 18 18 N 1.46651 * 107.05182 * 84.08474 * 17 15 14 19 19 C 1.36936 * 125.28779 * 197.36054 * 18 17 15 20 20 H 1.07997 * 120.00529 * 0.04751 * 19 18 17 21 21 C 1.38812 * 119.99916 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46976 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47141 * 119.99617 * 23 21 19 26 26 H 1.48501 * 109.47427 * 239.99951 * 23 21 19 27 27 C 1.46494 * 109.42255 * 17.38390 * 18 17 15 28 28 C 1.47250 * 125.52526 * 180.02562 * 12 10 9 29 29 H 1.09001 * 111.94895 * 55.56488 * 28 12 10 30 30 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47214 * 300.00509 * 1 2 3 32 32 H 1.09002 * 109.46713 * 60.00348 * 1 2 3 33 33 H 1.08997 * 109.47708 * 239.99556 * 2 1 3 34 34 H 1.09002 * 109.46713 * 119.99652 * 2 1 3 35 35 H 1.08993 * 109.47166 * 60.00269 * 4 3 2 36 36 H 1.08999 * 109.47610 * 299.99559 * 4 3 2 37 37 H 1.09004 * 109.47670 * 305.00157 * 5 4 3 38 38 H 1.08996 * 109.47060 * 184.99889 * 5 4 3 39 39 H 1.09001 * 109.46938 * 60.00058 * 7 6 5 40 40 H 1.08992 * 109.47388 * 300.00049 * 7 6 5 41 41 H 1.09002 * 109.47398 * 300.00244 * 8 7 6 42 42 H 1.09001 * 109.47194 * 60.00425 * 8 7 6 43 43 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 44 44 H 1.08998 * 109.47533 * 59.99948 * 9 8 7 45 45 H 1.09010 * 110.35077 * 275.63979 * 13 12 10 46 46 H 1.09003 * 110.35501 * 37.91774 * 13 12 10 47 47 H 1.08995 * 111.21331 * 279.47425 * 14 13 12 48 48 H 1.08999 * 110.93109 * 155.48747 * 14 13 12 49 49 H 1.09008 * 109.91711 * 324.73561 * 17 15 14 50 50 H 1.08995 * 110.08827 * 203.53172 * 17 15 14 51 51 H 0.97002 * 120.00146 * 179.97438 * 22 21 19 52 52 H 1.09004 * 109.71280 * 238.31699 * 27 18 17 53 53 H 1.09002 * 109.67816 * 117.74830 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3976 3.5461 1.2205 7 6 3.7193 4.9347 1.3223 8 6 3.2162 5.4779 2.6612 9 6 3.5601 6.9647 2.7700 10 6 3.0651 7.4996 4.0891 11 8 2.4940 6.7639 4.8659 12 7 3.2571 8.7956 4.4055 13 6 3.9381 9.7916 3.5598 14 6 3.3894 11.1611 4.0403 15 6 3.2788 10.9266 5.5663 16 1 4.2072 11.1224 6.1029 17 6 2.0894 11.7190 6.1265 18 7 0.8914 10.8981 5.9226 19 6 -0.3983 11.3561 5.9669 20 1 -0.5944 12.3995 6.1643 21 6 -1.4538 10.4791 5.7575 22 7 -1.2148 9.2075 5.5159 23 14 -3.2133 11.1036 5.8186 24 1 -3.2116 12.5607 6.1045 25 1 -3.8717 10.8570 4.5106 26 1 -3.9551 10.3895 6.8886 27 6 1.2889 9.5119 5.6646 28 6 2.8264 9.4440 5.6554 29 1 3.2180 8.9334 6.5352 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8340 0.9764 -0.8891 36 1 3.8334 0.9767 0.8908 37 1 3.3500 3.4410 -0.8424 38 1 4.9083 3.0253 -0.0892 39 1 3.2420 5.4789 0.5073 40 1 4.7999 5.0628 1.2607 41 1 2.1355 5.3498 2.7223 42 1 3.6932 4.9337 3.4764 43 1 4.6407 7.0932 2.7087 44 1 3.0828 7.5087 1.9549 45 1 5.0170 9.7399 3.7071 46 1 3.6899 9.6313 2.5106 47 1 2.4122 11.3692 3.6048 48 1 4.0938 11.9625 3.8178 49 1 1.9877 12.6636 5.5920 50 1 2.2332 11.9082 7.1903 51 1 -1.9524 8.5946 5.3700 52 1 0.9009 9.1920 4.6975 53 1 0.8970 8.8655 6.4500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189786567.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:01 Heat of formation + Delta-G solvation = -128.383033 kcal Electronic energy + Delta-G solvation = -30056.760885 eV Core-core repulsion = 25928.231520 eV Total energy + Delta-G solvation = -4128.529365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.49549 -39.65667 -39.32955 -38.34473 -36.58958 -34.75858 -34.03366 -32.62596 -32.18256 -30.66814 -30.06561 -28.60416 -27.35600 -26.33299 -23.94647 -23.70285 -23.50904 -22.81366 -22.09695 -20.90069 -19.95246 -18.93757 -18.22444 -18.00317 -17.69777 -17.29179 -17.01859 -16.67992 -16.38134 -16.28355 -15.98415 -15.80432 -15.25433 -15.11728 -14.73930 -14.46050 -14.32865 -14.09365 -13.96711 -13.66494 -13.41676 -13.33852 -13.20151 -12.99015 -12.95185 -12.86023 -12.74852 -12.60123 -12.42612 -12.31404 -12.09800 -12.03772 -11.90559 -11.87797 -11.78014 -11.76919 -11.49259 -11.42269 -10.84375 -10.72869 -10.58042 -10.51976 -9.57009 -8.91585 -7.85288 -5.25009 1.40450 1.43005 1.53656 1.72080 2.02732 2.46514 2.73393 2.76713 3.30940 3.40101 3.69739 3.73398 3.80652 3.96451 4.00459 4.04677 4.11799 4.16806 4.23957 4.30645 4.35760 4.37527 4.45207 4.46099 4.49186 4.49944 4.52807 4.55309 4.56746 4.60716 4.68896 4.75806 4.77933 4.87870 4.90378 4.97702 5.00066 5.11592 5.13916 5.22081 5.22935 5.23247 5.29566 5.44464 5.53214 5.60988 5.80403 6.17360 6.23376 6.37365 6.68383 7.05475 7.29124 7.77352 8.38311 9.22330 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.002310 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.351534 B =12115.933066 C =14263.976963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.416 6.416 4 C 0.058 3.942 5 C 0.058 3.942 6 O -0.415 6.415 7 C 0.070 3.930 8 C -0.101 4.101 9 C -0.113 4.113 10 C 0.509 3.491 11 O -0.594 6.594 12 N -0.613 5.613 13 C 0.099 3.901 14 C -0.115 4.115 15 C -0.091 4.091 16 H 0.134 0.866 17 C 0.135 3.865 18 N -0.623 5.623 19 C -0.240 4.240 20 H 0.091 0.909 21 C -0.075 4.075 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.256 1.256 25 H -0.293 1.293 26 H -0.297 1.297 27 C 0.202 3.798 28 C 0.115 3.885 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.125 0.875 49 H 0.054 0.946 50 H 0.021 0.979 51 H 0.241 0.759 52 H 0.010 0.990 53 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.622 -8.617 -15.859 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.336 6.336 4 C -0.019 4.019 5 C -0.018 4.018 6 O -0.335 6.335 7 C -0.006 4.006 8 C -0.139 4.139 9 C -0.153 4.153 10 C 0.300 3.700 11 O -0.475 6.475 12 N -0.346 5.346 13 C -0.022 4.022 14 C -0.152 4.152 15 C -0.110 4.110 16 H 0.152 0.848 17 C 0.010 3.990 18 N -0.350 5.350 19 C -0.369 4.369 20 H 0.109 0.891 21 C -0.267 4.267 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.180 1.180 25 H -0.220 1.220 26 H -0.224 1.224 27 C 0.075 3.925 28 C 0.010 3.990 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.155 0.845 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.143 0.857 49 H 0.072 0.928 50 H 0.038 0.962 51 H 0.050 0.950 52 H 0.028 0.972 53 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges 18.913 -9.071 -15.369 26.003 hybrid contribution -1.690 -0.385 0.519 1.809 sum 17.223 -9.456 -14.849 24.628 Atomic orbital electron populations 1.21784 0.93772 1.03265 1.02242 1.22627 0.95884 0.83032 1.00958 1.87962 1.22133 1.27909 1.95599 1.22730 0.81248 0.95929 1.01946 1.22754 0.99909 0.92477 0.86700 1.87942 1.81937 1.24118 1.39518 1.22491 1.00445 0.81296 0.96344 1.21131 1.00828 0.94351 0.97593 1.21490 1.05068 0.95613 0.93107 1.21231 0.78555 0.80505 0.89747 1.90724 1.44352 1.58305 1.54088 1.48762 1.57424 1.09023 1.19395 1.22727 0.97963 0.86230 0.95230 1.22790 1.01840 0.97769 0.92838 1.23005 0.98923 0.90587 0.98507 0.84776 1.21370 0.85566 0.94523 0.97586 1.44464 1.01870 1.04928 1.83716 1.19547 0.82247 0.94344 1.40773 0.89097 1.25819 1.02562 0.95829 1.02495 1.70342 1.30178 1.03587 1.56009 0.84965 0.79338 0.78207 0.76570 1.17995 1.22024 1.22422 1.20784 0.89918 0.85190 0.96586 1.22594 0.94659 0.94360 0.87387 0.91338 0.88914 0.93573 0.92223 0.91444 0.93132 0.88991 0.92749 0.92343 0.88819 0.92146 0.90002 0.94434 0.92202 0.84534 0.87028 0.87268 0.88902 0.93341 0.85674 0.92792 0.96153 0.95006 0.97195 1.00519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.05 0.87 6.66 71.98 0.48 1.35 16 3 O -0.42 -9.81 10.31 -144.34 -1.49 -11.30 16 4 C 0.06 0.97 6.32 71.98 0.45 1.42 16 5 C 0.06 0.98 6.32 71.98 0.45 1.44 16 6 O -0.41 -10.64 10.31 -144.34 -1.49 -12.13 16 7 C 0.07 1.44 5.94 71.98 0.43 1.87 16 8 C -0.10 -2.84 4.87 30.59 0.15 -2.70 16 9 C -0.11 -2.73 4.70 29.85 0.14 -2.59 16 10 C 0.51 19.10 7.56 87.66 0.66 19.76 16 11 O -0.59 -29.84 16.07 -3.04 -0.05 -29.89 16 12 N -0.61 -21.00 2.83 -783.72 -2.22 -23.22 16 13 C 0.10 2.13 6.67 86.96 0.58 2.71 16 14 C -0.11 -2.80 6.34 31.94 0.20 -2.59 16 15 C -0.09 -2.75 3.97 -9.23 -0.04 -2.79 16 16 H 0.13 2.93 8.14 -2.39 -0.02 2.92 16 17 C 0.13 5.30 6.50 86.52 0.56 5.87 16 18 N -0.62 -33.49 3.37 -698.88 -2.36 -35.85 16 19 C -0.24 -14.03 10.25 84.03 0.86 -13.17 16 20 H 0.09 4.95 7.83 -2.91 -0.02 4.93 16 21 C -0.07 -4.54 5.48 84.86 0.47 -4.08 16 22 N -0.95 -63.51 10.23 21.65 0.22 -63.29 16 23 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 27 C 0.20 11.19 4.63 86.68 0.40 11.59 16 28 C 0.11 4.67 3.81 45.93 0.18 4.84 16 29 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 42 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 43 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.11 2.29 7.85 -2.39 -0.02 2.28 16 45 H 0.11 1.47 8.14 -2.38 -0.02 1.46 16 46 H 0.09 1.63 7.49 -2.39 -0.02 1.61 16 47 H 0.05 1.58 7.93 -2.39 -0.02 1.56 16 48 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.05 1.97 7.95 -2.38 -0.02 1.95 16 50 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.24 15.83 8.31 -92.71 -0.77 15.06 16 52 H 0.01 0.63 6.89 -2.39 -0.02 0.61 16 53 H -0.02 -1.57 7.51 -2.39 -0.02 -1.59 16 Total: -1.00 -93.01 420.67 2.22 -90.79 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.85 Total: 13.17 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 6.72 Total: 21.11 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -4.35 Total: -122.35 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -3.02 Total: -53.32 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -93.01 2.22 -90.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189786567.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.589 kcal (2) G-P(sol) polarization free energy of solvation -93.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds