Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47298 * 2 1 4 4 C 1.42902 * 114.00125 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47205 * 29.99361 * 4 3 2 6 6 C 1.50706 * 109.46566 * 269.99509 * 4 3 2 7 7 O 1.21279 * 120.00477 * 344.83786 * 6 4 3 8 8 N 1.34778 * 119.99458 * 164.83315 * 6 4 3 9 9 C 1.47423 * 125.64623 * 184.37592 * 8 6 4 10 10 C 1.54910 * 104.82957 * 155.90884 * 9 8 6 11 11 C 1.55157 * 101.58547 * 37.01035 * 10 9 8 12 12 H 1.08994 * 110.72077 * 83.03592 * 11 10 9 13 13 N 1.46497 * 110.72091 * 206.13580 * 11 10 9 14 14 C 1.46495 * 120.00394 * 58.54226 * 13 11 10 15 15 C 1.36944 * 120.00066 * 238.54462 * 13 11 10 16 16 H 1.08003 * 119.99733 * 341.47640 * 15 13 11 17 17 C 1.38804 * 120.00385 * 161.47581 * 15 13 11 18 18 N 1.31622 * 119.99845 * 342.85011 * 17 15 13 19 19 Si 1.86792 * 120.00306 * 162.84864 * 17 15 13 20 20 H 1.48494 * 109.47534 * 265.02247 * 19 17 15 21 21 H 1.48502 * 109.46869 * 25.02359 * 19 17 15 22 22 H 1.48505 * 109.47410 * 145.02037 * 19 17 15 23 23 C 1.47026 * 125.64811 * 4.42008 * 8 6 4 24 24 C 1.53006 * 109.47144 * 149.99946 * 4 3 2 25 25 C 1.53178 * 109.54362 * 53.89407 * 24 4 3 26 26 C 1.53092 * 109.16145 * 183.15061 * 25 24 4 27 27 O 1.42905 * 109.41147 * 57.60874 * 26 25 24 28 28 C 1.42902 * 114.09852 * 298.83938 * 27 26 25 29 29 C 1.53090 * 109.41441 * 61.16232 * 28 27 26 30 30 H 1.08997 * 109.47041 * 300.00272 * 1 2 3 31 31 H 1.09000 * 109.46786 * 60.00273 * 1 2 3 32 32 H 1.08991 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47041 * 239.99728 * 2 1 3 34 34 H 1.09000 * 109.46786 * 119.99727 * 2 1 3 35 35 H 1.08996 * 110.36784 * 37.07196 * 9 8 6 36 36 H 1.08994 * 110.46027 * 274.78976 * 9 8 6 37 37 H 1.09002 * 111.00645 * 278.93242 * 10 9 8 38 38 H 1.09004 * 111.00027 * 155.08544 * 10 9 8 39 39 H 1.09003 * 109.47332 * 265.61506 * 14 13 11 40 40 H 1.09006 * 109.46851 * 25.61172 * 14 13 11 41 41 H 1.08995 * 109.47493 * 145.60991 * 14 13 11 42 42 H 0.97005 * 119.99965 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.88592 * 61.60974 * 23 8 6 44 44 H 1.09000 * 109.88035 * 300.43211 * 23 8 6 45 45 H 1.08998 * 109.53781 * 174.16203 * 24 4 3 46 46 H 1.09003 * 109.52115 * 303.05504 * 25 24 4 47 47 H 1.08996 * 109.52395 * 63.24395 * 25 24 4 48 48 H 1.08995 * 109.48142 * 297.62887 * 26 25 24 49 49 H 1.08998 * 109.47845 * 177.58603 * 26 25 24 50 50 H 1.08996 * 109.47993 * 301.17870 * 28 27 26 51 51 H 1.09007 * 109.47905 * 181.14476 * 28 27 26 52 52 H 1.08995 * 109.52122 * 182.48701 * 29 28 27 53 53 H 1.08998 * 109.57749 * 62.32713 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8632 0.6016 -0.5146 6 6 3.9322 1.4996 1.4201 7 8 3.1596 1.7139 2.3301 8 7 5.2391 1.2968 1.6794 9 6 5.8469 1.2177 3.0202 10 6 7.1422 0.3920 2.8203 11 6 7.6193 0.8922 1.4312 12 1 8.1761 1.8243 1.5273 13 7 8.4316 -0.1281 0.7639 14 6 7.8676 -1.4532 0.4952 15 6 9.7181 0.1568 0.3911 16 1 10.0412 1.1839 0.3073 17 6 10.6071 -0.8745 0.1212 18 7 10.3438 -2.0957 0.5359 19 14 12.1769 -0.5295 -0.8306 20 1 11.9563 -0.8175 -2.2705 21 1 12.5537 0.8971 -0.6632 22 1 13.2688 -1.3937 -0.3145 23 6 6.2950 1.1186 0.6719 24 6 3.8404 2.7458 -0.7219 25 6 3.1130 3.9391 -0.0947 26 6 3.4679 5.2092 -0.8723 27 8 3.1131 5.0396 -2.2462 28 6 3.7979 3.9678 -2.8977 29 6 3.4563 2.6479 -2.2014 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.1754 0.7086 3.7116 36 1 6.0859 2.2149 3.3896 37 1 6.9253 -0.6759 2.7977 38 1 7.8762 0.6237 3.5922 39 1 8.1319 -2.1318 1.3062 40 1 6.7825 -1.3784 0.4231 41 1 8.2685 -1.8353 -0.4435 42 1 10.9649 -2.8165 0.3469 43 1 6.3710 2.0122 0.0525 44 1 6.0715 0.2517 0.0501 45 1 4.9177 2.8862 -0.6333 46 1 2.0365 3.7737 -0.1389 47 1 3.4231 4.0496 0.9444 48 1 4.5388 5.3961 -0.7939 49 1 2.9196 6.0547 -0.4570 50 1 4.8731 4.1386 -2.8457 51 1 3.4874 3.9192 -3.9415 52 1 4.0119 1.8350 -2.6689 53 1 2.3870 2.4553 -2.2881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191585708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = -120.830061 kcal Electronic energy + Delta-G solvation = -32279.777287 eV Core-core repulsion = 28151.575444 eV Total energy + Delta-G solvation = -4128.201843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.73001 -40.18192 -39.27967 -38.26135 -36.49253 -35.35550 -33.38678 -32.12455 -32.01568 -31.69461 -29.40714 -28.68402 -28.05654 -25.56348 -24.65237 -24.56903 -23.75914 -23.24578 -21.20711 -20.94196 -20.46792 -18.94542 -18.45064 -17.89172 -17.54385 -17.13862 -16.97932 -16.70573 -16.35641 -16.02712 -15.69750 -15.53878 -15.47486 -15.01508 -14.98776 -14.75980 -14.42688 -14.27584 -14.19474 -13.78860 -13.39562 -13.26574 -13.18320 -13.01475 -12.93660 -12.89209 -12.81156 -12.55405 -12.43186 -12.33301 -12.25438 -12.15665 -12.05827 -11.95751 -11.81225 -11.74954 -11.53918 -11.33179 -11.18476 -10.61482 -10.57064 -10.25874 -9.68665 -8.84723 -7.82845 -5.26190 1.45189 1.50422 1.52737 1.60429 1.80297 2.51960 2.61243 2.98776 3.23539 3.31159 3.55098 3.62116 3.67490 3.79545 3.86441 3.99243 4.00591 4.09729 4.15521 4.21839 4.25433 4.32921 4.34843 4.36320 4.41816 4.44866 4.58979 4.61588 4.69937 4.72482 4.75033 4.80214 4.81510 4.90082 4.90642 4.96616 4.98845 5.10617 5.11626 5.17517 5.21496 5.22892 5.32727 5.37519 5.40225 5.66058 5.73948 6.00428 6.28102 6.30098 6.45021 7.04585 7.14927 7.86109 8.28604 9.21548 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.003355 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.405365 B = 8344.698329 C = 9313.289080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.363 6.363 4 C 0.090 3.910 5 H 0.096 0.904 6 C 0.505 3.495 7 O -0.570 6.570 8 N -0.610 5.610 9 C 0.113 3.887 10 C -0.142 4.142 11 C 0.166 3.834 12 H 0.086 0.914 13 N -0.599 5.599 14 C 0.179 3.821 15 C -0.261 4.261 16 H 0.080 0.920 17 C -0.049 4.049 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.288 1.288 21 H -0.266 1.266 22 H -0.302 1.302 23 C 0.088 3.912 24 C -0.079 4.079 25 C -0.138 4.138 26 C 0.063 3.937 27 O -0.400 6.400 28 C 0.058 3.942 29 C -0.142 4.142 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.000 1.000 40 H 0.029 0.971 41 H 0.021 0.979 42 H 0.247 0.753 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.102 0.898 50 H 0.060 0.940 51 H 0.110 0.890 52 H 0.090 0.910 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.193 8.901 -4.850 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.281 6.281 4 C 0.028 3.972 5 H 0.113 0.887 6 C 0.294 3.706 7 O -0.449 6.449 8 N -0.345 5.345 9 C -0.010 4.010 10 C -0.182 4.182 11 C 0.058 3.942 12 H 0.104 0.896 13 N -0.321 5.321 14 C 0.034 3.966 15 C -0.391 4.391 16 H 0.098 0.902 17 C -0.245 4.245 18 N -0.584 5.584 19 Si 0.793 3.207 20 H -0.216 1.216 21 H -0.190 1.190 22 H -0.229 1.229 23 C -0.036 4.036 24 C -0.098 4.098 25 C -0.176 4.176 26 C -0.013 4.013 27 O -0.319 6.319 28 C -0.019 4.019 29 C -0.179 4.179 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.018 0.982 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.120 0.880 50 H 0.078 0.922 51 H 0.128 0.872 52 H 0.109 0.891 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.852 9.153 -4.524 18.856 hybrid contribution 1.436 -0.989 0.274 1.765 sum -14.417 8.165 -4.249 17.104 Atomic orbital electron populations 1.21698 0.92089 1.03411 1.02785 1.22767 0.97119 0.82951 1.00164 1.87982 1.18293 1.27598 1.94255 1.22008 0.83346 1.01170 0.90654 0.88659 1.21459 0.80437 0.76000 0.92726 1.90661 1.55613 1.50281 1.48322 1.48629 1.06545 1.70291 1.09030 1.22184 0.93838 1.00491 0.84437 1.23236 0.95841 0.99331 0.99797 1.21458 0.89996 0.92862 0.89919 0.89582 1.44075 1.10657 1.10195 1.67125 1.20472 0.92463 0.85613 0.98025 1.19618 0.87695 0.92804 1.38993 0.90189 1.25610 1.00827 0.95940 1.02091 1.70270 1.38230 1.01075 1.48785 0.85297 0.79357 0.77669 0.78403 1.21550 1.19040 1.22894 1.22731 0.87561 1.01873 0.91433 1.21340 1.00725 0.91832 0.95883 1.22027 1.01487 0.95113 0.98981 1.22625 1.00407 0.97013 0.81260 1.87901 1.67409 1.52626 1.23999 1.22732 0.96785 0.85140 0.97212 1.22178 1.03174 0.99454 0.93132 0.93036 0.91188 0.89124 0.91362 0.94988 0.91594 0.90277 0.92500 0.89964 0.98209 0.95285 0.96043 0.94404 0.89672 0.91177 0.88772 0.91387 0.92516 0.92272 0.87996 0.92200 0.87168 0.89139 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 1.01 6.46 71.98 0.46 1.47 16 3 O -0.36 -9.47 8.12 -130.39 -1.06 -10.53 16 4 C 0.09 2.21 1.59 29.85 0.05 2.26 16 5 H 0.10 2.11 7.36 -2.39 -0.02 2.10 16 6 C 0.50 15.40 6.20 87.66 0.54 15.94 16 7 O -0.57 -21.41 16.86 15.56 0.26 -21.15 16 8 N -0.61 -17.68 3.33 -811.79 -2.70 -20.38 16 9 C 0.11 3.25 6.89 86.86 0.60 3.85 16 10 C -0.14 -4.56 6.65 31.99 0.21 -4.35 16 11 C 0.17 5.73 3.45 46.18 0.16 5.89 16 12 H 0.09 2.89 7.90 -2.39 -0.02 2.87 16 13 N -0.60 -26.56 2.94 -696.17 -2.05 -28.61 16 14 C 0.18 8.08 7.69 127.77 0.98 9.07 16 15 C -0.26 -12.98 9.65 84.03 0.81 -12.17 16 16 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.05 -2.58 5.02 84.86 0.43 -2.16 16 18 N -0.94 -52.57 10.70 21.65 0.23 -52.34 16 19 Si 0.96 42.38 29.59 68.60 2.03 44.41 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 23 C 0.09 2.52 5.63 86.73 0.49 3.00 16 24 C -0.08 -1.67 2.03 -10.67 -0.02 -1.70 16 25 C -0.14 -3.17 5.03 30.68 0.15 -3.02 16 26 C 0.06 1.24 6.84 72.01 0.49 1.73 16 27 O -0.40 -8.63 10.77 -148.98 -1.60 -10.23 16 28 C 0.06 0.97 6.84 72.01 0.49 1.46 16 29 C -0.14 -2.49 5.35 30.68 0.16 -2.33 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.04 7.28 -2.39 -0.02 2.03 16 38 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.00 -0.02 7.48 -2.39 -0.02 -0.04 16 40 H 0.03 1.11 6.25 -2.38 -0.01 1.09 16 41 H 0.02 1.05 7.10 -2.39 -0.02 1.03 16 42 H 0.25 13.61 8.31 -92.70 -0.77 12.84 16 43 H 0.09 2.10 6.23 -2.39 -0.01 2.09 16 44 H 0.07 2.08 5.83 -2.39 -0.01 2.06 16 45 H 0.09 1.91 5.85 -2.39 -0.01 1.90 16 46 H 0.07 1.78 7.44 -2.39 -0.02 1.77 16 47 H 0.06 1.47 7.53 -2.39 -0.02 1.45 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 52 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.07 1.43 7.77 -2.39 -0.02 1.41 16 Total: -1.00 -64.90 405.12 2.74 -62.16 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.87 Total: 19.49 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 6.76 Total: 17.17 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -4.52 Total: -101.33 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -2.40 Total: -41.90 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.90 2.74 -62.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191585708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.673 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds