Wall clock time and date at job start Sat Apr 11 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42891 * 109.47299 * 2 1 4 4 C 1.42895 * 114.00557 * 177.87682 * 3 2 1 5 5 H 1.09003 * 109.46744 * 17.09323 * 4 3 2 6 6 C 1.50696 * 109.47860 * 137.09736 * 4 3 2 7 7 O 1.21283 * 119.99906 * 12.17757 * 6 4 3 8 8 N 1.34779 * 120.00110 * 192.18264 * 6 4 3 9 9 C 1.48206 * 119.97449 * 5.36204 * 8 6 4 10 10 C 1.47134 * 110.34596 * 102.46329 * 9 8 6 11 11 C 1.53803 * 111.83944 * 58.29956 * 10 9 8 12 12 N 1.43464 * 107.96014 * 281.67348 * 11 10 9 13 13 C 1.36944 * 118.93655 * 273.62489 * 12 11 10 14 14 H 1.08006 * 119.99839 * 142.14284 * 13 12 11 15 15 C 1.38804 * 120.00140 * 322.14263 * 13 12 11 16 16 N 1.31620 * 119.99932 * 160.43674 * 15 13 12 17 17 Si 1.86801 * 120.00327 * 340.43557 * 15 13 12 18 18 H 1.48493 * 109.47122 * 93.00870 * 17 15 13 19 19 H 1.48503 * 109.47239 * 213.01130 * 17 15 13 20 20 H 1.48504 * 109.46825 * 333.00863 * 17 15 13 21 21 C 1.48853 * 122.12234 * 93.65187 * 12 11 10 22 22 C 1.43619 * 119.96864 * 185.08665 * 8 6 4 23 23 C 1.53005 * 109.46935 * 257.09939 * 4 3 2 24 24 C 1.53172 * 109.54587 * 63.57303 * 23 4 3 25 25 C 1.53093 * 109.21815 * 183.18372 * 24 23 4 26 26 O 1.42900 * 109.41024 * 57.57584 * 25 24 23 27 27 C 1.42901 * 114.10049 * 298.84061 * 26 25 24 28 28 C 1.53091 * 109.41118 * 61.16440 * 27 26 25 29 29 H 1.09002 * 109.47717 * 59.99904 * 1 2 3 30 30 H 1.09007 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47212 * 299.99483 * 1 2 3 32 32 H 1.09008 * 109.46776 * 240.00363 * 2 1 3 33 33 H 1.09001 * 109.47282 * 120.00402 * 2 1 3 34 34 H 1.08996 * 109.32659 * 222.73463 * 9 8 6 35 35 H 1.09011 * 109.32109 * 342.37411 * 9 8 6 36 36 H 1.09008 * 109.00877 * 178.90480 * 10 9 8 37 37 H 1.08999 * 109.01168 * 297.76847 * 10 9 8 38 38 H 1.08997 * 109.76058 * 41.28489 * 11 10 9 39 39 H 1.08996 * 109.76325 * 162.00539 * 11 10 9 40 40 H 0.97002 * 120.00160 * 185.01407 * 16 15 13 41 41 H 1.08994 * 109.48101 * 80.57854 * 21 12 11 42 42 H 1.09001 * 109.48396 * 200.61566 * 21 12 11 43 43 H 1.09004 * 108.87725 * 31.46650 * 22 8 6 44 44 H 1.09004 * 108.87454 * 149.90734 * 22 8 6 45 45 H 1.09001 * 109.61560 * 183.79509 * 23 4 3 46 46 H 1.09004 * 109.52355 * 63.24619 * 24 23 4 47 47 H 1.08997 * 109.52565 * 303.12637 * 24 23 4 48 48 H 1.08999 * 109.48417 * 177.56041 * 25 24 23 49 49 H 1.09003 * 109.47940 * 297.59766 * 25 24 23 50 50 H 1.09000 * 109.48088 * 181.13815 * 27 26 25 51 51 H 1.08997 * 109.48353 * 301.17927 * 27 26 25 52 52 H 1.08992 * 109.52808 * 62.29595 * 28 27 26 53 53 H 1.08999 * 109.52114 * 182.42512 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4300 1.4604 0.0484 5 1 3.8798 0.5063 -0.2264 6 6 3.8824 2.5256 -0.9168 7 8 3.0710 3.2770 -1.4147 8 7 5.1888 2.6432 -1.2268 9 6 6.1639 1.6526 -0.7128 10 6 6.5286 0.6973 -1.7708 11 6 7.1274 1.4044 -2.9985 12 7 6.0468 1.9699 -3.7540 13 6 5.4070 1.1905 -4.6805 14 1 4.3384 1.2753 -4.8121 15 6 6.1319 0.2916 -5.4507 16 7 5.5184 -0.7088 -6.0465 17 14 7.9783 0.5016 -5.6415 18 1 8.6774 -0.3017 -4.6066 19 1 8.3923 0.0390 -6.9905 20 1 8.3328 1.9345 -5.4791 21 6 5.5991 3.3767 -3.5636 22 6 5.6338 3.7252 -2.0598 23 6 3.8635 1.8392 1.4660 24 6 3.4834 0.7159 2.4355 25 6 3.8484 1.1362 3.8616 26 8 3.1791 2.3573 4.1828 27 6 3.5326 3.4557 3.3398 28 6 3.1549 3.1285 1.8927 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 7.0593 2.1716 -0.3711 35 1 5.7206 1.1100 0.1223 36 1 7.2598 -0.0080 -1.3757 37 1 5.6374 0.1498 -2.0775 38 1 7.8041 2.1951 -2.6747 39 1 7.6689 0.6837 -3.6111 40 1 6.0330 -1.3781 -6.5243 41 1 6.2636 4.0466 -4.1090 42 1 4.5819 3.4885 -3.9389 43 1 4.9922 4.5895 -1.8880 44 1 6.6553 3.9862 -1.7830 45 1 4.9425 1.9921 1.4900 46 1 4.0272 -0.1915 2.1728 47 1 2.4114 0.5288 2.3739 48 1 3.5402 0.3582 4.5600 49 1 4.9261 1.2828 3.9328 50 1 2.9968 4.3485 3.6622 51 1 4.6061 3.6326 3.4042 52 1 2.0761 2.9913 1.8199 53 1 3.4627 3.9469 1.2420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196655133.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:27 Heat of formation + Delta-G solvation = -114.237410 kcal Electronic energy + Delta-G solvation = -33275.439990 eV Core-core repulsion = 29147.524026 eV Total energy + Delta-G solvation = -4127.915964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.86167 -40.23452 -39.08428 -38.34112 -36.25347 -35.09462 -33.72294 -33.65504 -32.27722 -31.94056 -30.20552 -28.46889 -27.32056 -25.63477 -24.86206 -24.53467 -23.68568 -23.11021 -21.83104 -21.13481 -20.05235 -18.69707 -18.36926 -17.96111 -17.52222 -17.38308 -16.95573 -16.86336 -16.48588 -16.27581 -15.68376 -15.54129 -15.39494 -15.28068 -15.00092 -14.87188 -14.67526 -14.64193 -13.94978 -13.86098 -13.81040 -13.52683 -13.31969 -13.22076 -13.19703 -12.80429 -12.73506 -12.68076 -12.40345 -12.28906 -12.18293 -12.09184 -11.99316 -11.84651 -11.74487 -11.60121 -11.42689 -11.20052 -10.96779 -10.65673 -10.60121 -10.15740 -9.63350 -8.73561 -8.16739 -5.61144 1.26662 1.41323 1.52166 1.55850 1.91260 2.37895 2.77446 3.01208 3.07385 3.35581 3.36475 3.52983 3.71262 3.91058 3.92566 4.00502 4.08786 4.10623 4.16289 4.21974 4.28115 4.33437 4.35900 4.41418 4.43124 4.47952 4.59527 4.64145 4.68322 4.70240 4.71445 4.79431 4.81381 4.82016 4.90751 4.93493 4.96502 5.00288 5.03329 5.08508 5.14315 5.17576 5.20802 5.39536 5.45662 5.73777 5.95445 6.07949 6.12749 6.31136 6.44427 7.02922 7.23605 7.64652 8.00187 9.01625 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003817 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.077138 B = 7333.988866 C = 7921.762803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.378 6.378 4 C 0.085 3.915 5 H 0.090 0.910 6 C 0.507 3.493 7 O -0.576 6.576 8 N -0.586 5.586 9 C 0.113 3.887 10 C -0.162 4.162 11 C 0.138 3.862 12 N -0.611 5.611 13 C -0.258 4.258 14 H 0.012 0.988 15 C -0.026 4.026 16 N -0.959 5.959 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.315 1.315 20 H -0.260 1.260 21 C 0.125 3.875 22 C 0.111 3.889 23 C -0.092 4.092 24 C -0.152 4.152 25 C 0.061 3.939 26 O -0.403 6.403 27 C 0.068 3.932 28 C -0.139 4.139 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.109 0.891 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.068 0.932 52 H 0.057 0.943 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 2.854 24.010 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.297 6.297 4 C 0.024 3.976 5 H 0.108 0.892 6 C 0.295 3.705 7 O -0.455 6.455 8 N -0.318 5.318 9 C -0.007 4.007 10 C -0.203 4.203 11 C 0.013 3.987 12 N -0.335 5.335 13 C -0.388 4.388 14 H 0.030 0.970 15 C -0.222 4.222 16 N -0.604 5.604 17 Si 0.797 3.203 18 H -0.186 1.186 19 H -0.245 1.245 20 H -0.184 1.184 21 C 0.000 4.000 22 C -0.014 4.014 23 C -0.111 4.111 24 C -0.189 4.189 25 C -0.015 4.015 26 O -0.322 6.322 27 C -0.009 4.009 28 C -0.177 4.177 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.127 0.873 49 H 0.087 0.913 50 H 0.115 0.885 51 H 0.086 0.914 52 H 0.075 0.925 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.543 3.376 23.771 24.144 hybrid contribution 0.283 -0.514 -1.828 1.920 sum 2.826 2.862 21.943 22.309 Atomic orbital electron populations 1.21726 0.92657 1.03470 1.02433 1.22892 0.96784 0.82811 1.00657 1.87989 1.19140 1.27761 1.94762 1.21986 0.83436 0.97337 0.94891 0.89219 1.21048 0.82317 0.85230 0.81877 1.90646 1.53517 1.46279 1.55062 1.47524 1.06778 1.28667 1.48880 1.21206 0.93337 0.90240 0.95913 1.21672 1.01437 0.99592 0.97560 1.20890 0.89793 0.96296 0.91705 1.43958 1.38914 1.08311 1.42365 1.18515 0.89919 1.17197 1.13210 0.97016 1.26174 1.03222 0.96853 0.95907 1.69952 1.37726 1.13364 1.39364 0.85525 0.80303 0.79149 0.75329 1.18584 1.24463 1.18432 1.22113 0.97153 0.85004 0.95706 1.21417 1.01394 0.89201 0.89436 1.21670 1.01434 0.96756 0.91256 1.22349 1.02932 0.98141 0.95489 1.22725 0.97322 0.86415 0.95076 1.87907 1.68632 1.19546 1.56105 1.22594 1.00619 0.89506 0.88181 1.22020 1.01137 0.96932 0.97623 0.93782 0.88676 0.91318 0.94878 0.90235 0.86892 0.88064 0.88628 0.95053 0.90478 0.95308 0.92786 0.93338 0.96172 0.90990 0.87442 0.87458 0.88601 0.91414 0.87300 0.91268 0.88466 0.91411 0.92464 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 10.28 71.98 0.74 -2.58 16 2 C 0.04 1.15 5.96 71.98 0.43 1.58 16 3 O -0.38 -12.23 8.34 -130.23 -1.09 -13.31 16 4 C 0.08 2.40 1.52 29.85 0.05 2.44 16 5 H 0.09 2.41 6.75 -2.39 -0.02 2.39 16 6 C 0.51 18.13 5.97 87.66 0.52 18.66 16 7 O -0.58 -26.35 16.14 15.71 0.25 -26.10 16 8 N -0.59 -17.91 2.47 -832.19 -2.05 -19.96 16 9 C 0.11 2.54 4.96 84.23 0.42 2.96 16 10 C -0.16 -4.95 5.64 29.04 0.16 -4.78 16 11 C 0.14 5.18 4.53 87.21 0.39 5.58 16 12 N -0.61 -28.32 2.14 -699.02 -1.50 -29.82 16 13 C -0.26 -15.17 9.59 84.03 0.81 -14.36 16 14 H 0.01 0.83 8.06 -2.91 -0.02 0.81 16 15 C -0.03 -1.52 5.34 84.86 0.45 -1.07 16 16 N -0.96 -61.09 13.96 21.65 0.30 -60.79 16 17 Si 0.97 45.71 24.95 68.60 1.71 47.42 16 18 H -0.26 -11.02 6.64 99.48 0.66 -10.36 16 19 H -0.32 -15.38 7.11 99.48 0.71 -14.67 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 21 C 0.13 5.12 6.84 86.40 0.59 5.71 16 22 C 0.11 3.42 5.17 87.39 0.45 3.87 16 23 C -0.09 -1.83 1.71 -10.67 -0.02 -1.85 16 24 C -0.15 -2.33 4.62 30.68 0.14 -2.19 16 25 C 0.06 0.81 6.84 72.01 0.49 1.31 16 26 O -0.40 -7.78 10.76 -148.98 -1.60 -9.39 16 27 C 0.07 1.18 6.84 72.01 0.49 1.68 16 28 C -0.14 -3.16 5.03 30.69 0.15 -3.01 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.08 1.55 6.08 -2.39 -0.01 1.54 16 34 H 0.11 1.68 8.06 -2.39 -0.02 1.66 16 35 H 0.10 1.74 4.48 -2.38 -0.01 1.73 16 36 H 0.10 2.27 8.14 -2.38 -0.02 2.26 16 37 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 38 H 0.08 2.30 7.58 -2.39 -0.02 2.29 16 39 H 0.03 1.22 2.73 -2.39 -0.01 1.21 16 40 H 0.26 15.75 8.32 -92.71 -0.77 14.98 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.02 0.96 7.97 -2.39 -0.02 0.94 16 43 H 0.07 2.29 7.45 -2.38 -0.02 2.28 16 44 H 0.11 2.44 7.73 -2.38 -0.02 2.42 16 45 H 0.11 1.65 6.24 -2.39 -0.01 1.64 16 46 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.07 1.25 6.15 -2.39 -0.01 1.24 16 48 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 50 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.06 1.60 7.49 -2.39 -0.02 1.58 16 53 H 0.06 1.45 7.47 -2.39 -0.02 1.43 16 Total: -1.00 -83.27 390.49 3.15 -80.12 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.84 Total: 17.89 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 6.28 Total: 13.94 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.25 Total: -110.57 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -2.44 Total: -48.80 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.71 Total: 47.42 kcal Total: -83.27 3.15 -80.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196655133.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.117 kcal (2) G-P(sol) polarization free energy of solvation -83.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds