Wall clock time and date at job start Sat Apr 11 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47845 * 2 1 4 4 C 1.42897 * 114.00750 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46726 * 29.99955 * 4 3 2 6 6 C 1.50701 * 109.47074 * 270.00240 * 4 3 2 7 7 O 1.21273 * 120.00116 * 354.99835 * 6 4 3 8 8 N 1.34782 * 119.99750 * 174.99384 * 6 4 3 9 9 C 1.46914 * 120.63110 * 0.02562 * 8 6 4 10 10 C 1.53193 * 108.77425 * 233.58153 * 9 8 6 11 11 C 1.53037 * 109.31417 * 305.36550 * 10 9 8 12 12 C 1.53033 * 109.53729 * 61.36422 * 11 10 9 13 13 H 1.09001 * 109.49784 * 58.58736 * 12 11 10 14 14 N 1.46506 * 109.50183 * 178.65282 * 12 11 10 15 15 C 1.36938 * 119.99649 * 275.00385 * 14 12 11 16 16 H 1.07997 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99624 * 179.97438 * 15 14 12 18 18 N 1.31621 * 120.00307 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00016 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46998 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47579 * 120.00213 * 19 17 15 22 22 H 1.48499 * 109.47189 * 240.00323 * 19 17 15 23 23 C 1.46925 * 120.62495 * 179.71890 * 8 6 4 24 24 C 1.52996 * 109.47526 * 149.99767 * 4 3 2 25 25 C 1.53177 * 109.54399 * 300.00515 * 24 4 3 26 26 C 1.53098 * 109.21356 * 176.87607 * 25 24 4 27 27 O 1.42899 * 109.41440 * 302.35638 * 26 25 24 28 28 C 1.42904 * 114.09711 * 61.16120 * 27 26 25 29 29 C 1.53100 * 109.41581 * 298.84173 * 28 27 26 30 30 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47017 * 300.00157 * 1 2 3 32 32 H 1.09004 * 109.46539 * 59.99726 * 1 2 3 33 33 H 1.09002 * 109.47017 * 239.99843 * 2 1 3 34 34 H 1.09006 * 109.47043 * 120.00219 * 2 1 3 35 35 H 1.09005 * 109.59090 * 353.36939 * 9 8 6 36 36 H 1.08997 * 109.59087 * 113.65240 * 9 8 6 37 37 H 1.08998 * 109.49730 * 65.31966 * 10 9 8 38 38 H 1.09004 * 109.49944 * 185.38208 * 10 9 8 39 39 H 1.09004 * 109.46022 * 181.38648 * 11 10 9 40 40 H 1.08996 * 109.46007 * 301.35727 * 11 10 9 41 41 H 0.97001 * 120.00006 * 94.99619 * 14 12 11 42 42 H 0.96998 * 120.00497 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.58479 * 246.20232 * 23 8 6 44 44 H 1.08998 * 109.58952 * 6.62663 * 23 8 6 45 45 H 1.09002 * 109.61782 * 179.77740 * 24 4 3 46 46 H 1.09002 * 109.52487 * 56.93818 * 25 24 4 47 47 H 1.09004 * 109.52023 * 296.81438 * 25 24 4 48 48 H 1.08999 * 109.47859 * 62.34349 * 26 25 24 49 49 H 1.08997 * 109.47984 * 182.36161 * 26 25 24 50 50 H 1.09002 * 109.48461 * 58.81736 * 28 27 26 51 51 H 1.09002 * 109.48312 * 178.85406 * 28 27 26 52 52 H 1.08992 * 109.52355 * 177.51674 * 29 28 27 53 53 H 1.08999 * 109.51737 * 297.64019 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9312 1.4999 1.4216 7 8 3.1417 1.5293 2.3417 8 7 5.2559 1.5026 1.6699 9 6 6.2245 1.4677 0.5658 10 6 7.1931 0.3035 0.7964 11 6 7.8257 0.4384 2.1833 12 6 6.7326 0.3763 3.2526 13 1 6.1937 -0.5674 3.1675 14 7 7.3421 0.4732 4.5813 15 6 7.8247 -0.6508 5.1968 16 1 7.7556 -1.6088 4.7030 17 6 8.4027 -0.5589 6.4555 18 7 8.4864 0.6086 7.0576 19 14 9.0603 -2.0922 7.2956 20 1 8.8466 -3.2691 6.4154 21 1 10.5126 -1.9285 7.5583 22 1 8.3450 -2.2981 8.5805 23 6 5.7587 1.5475 3.0497 24 6 3.8412 2.7455 -0.7207 25 6 3.3335 2.7067 -2.1654 26 6 3.6798 4.0281 -2.8567 27 8 3.1020 5.1120 -2.1263 28 6 3.5750 5.2280 -0.7828 29 6 3.2246 3.9548 -0.0081 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.6981 1.3237 -0.3778 36 1 6.7783 2.4060 0.5356 37 1 6.6499 -0.6394 0.7344 38 1 7.9742 0.3240 0.0362 39 1 8.5339 -0.3752 2.3402 40 1 8.3477 1.3927 2.2531 41 1 7.4039 1.3336 5.0249 42 1 8.8899 0.6728 7.9373 43 1 6.2771 2.4912 3.2192 44 1 4.9248 1.4561 3.7457 45 1 4.9274 2.8359 -0.7182 46 1 2.2525 2.5665 -2.1680 47 1 3.8090 1.8821 -2.6965 48 1 4.7626 4.1482 -2.8897 49 1 3.2837 4.0218 -3.8721 50 1 4.6565 5.3638 -0.7886 51 1 3.1033 6.0862 -0.3042 52 1 3.6231 4.0230 1.0040 53 1 2.1414 3.8405 0.0337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208807808.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:30 Heat of formation + Delta-G solvation = -144.229538 kcal Electronic energy + Delta-G solvation = -32050.644248 eV Core-core repulsion = 27921.427727 eV Total energy + Delta-G solvation = -4129.216521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.88332 -40.11298 -39.15336 -38.13582 -36.36470 -35.29459 -33.75738 -32.78140 -32.05341 -31.99232 -30.51247 -28.74733 -26.52563 -25.79235 -24.53611 -24.22471 -23.77203 -23.42912 -21.59873 -21.04175 -20.32526 -19.20280 -18.44111 -17.91880 -17.34950 -17.01826 -16.80092 -16.53786 -16.31969 -16.02261 -15.72478 -15.56908 -15.45818 -15.21508 -15.13780 -14.77631 -14.69344 -14.61372 -14.13135 -13.95863 -13.68214 -13.32664 -13.20129 -12.99234 -12.95452 -12.92780 -12.81872 -12.44799 -12.30116 -12.20293 -12.18645 -12.09426 -11.98067 -11.85067 -11.75424 -11.70976 -11.57392 -11.27173 -11.13205 -10.94698 -10.51525 -10.20440 -9.71328 -9.05479 -7.98238 -5.27892 1.44173 1.45667 1.50073 1.55210 1.80713 2.53187 2.63590 3.02607 3.30038 3.35666 3.54939 3.67134 3.76850 3.90429 3.98520 4.03448 4.05294 4.08406 4.12056 4.19005 4.23665 4.28181 4.33420 4.37343 4.42338 4.44883 4.57557 4.61881 4.70278 4.73248 4.74497 4.78559 4.83640 4.83891 4.85481 4.93947 5.00862 5.04951 5.14500 5.16494 5.20588 5.23126 5.38281 5.39830 5.44260 5.48732 5.57906 6.03843 6.23540 6.33107 6.40599 7.11109 7.29314 8.02182 8.26235 9.25270 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.002811 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.399519 B = 9958.088246 C =10732.000336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.088 3.912 5 H 0.116 0.884 6 C 0.485 3.515 7 O -0.580 6.580 8 N -0.599 5.599 9 C 0.096 3.904 10 C -0.124 4.124 11 C -0.128 4.128 12 C 0.168 3.832 13 H 0.029 0.971 14 N -0.736 5.736 15 C -0.238 4.238 16 H 0.073 0.927 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.296 1.296 23 C 0.119 3.881 24 C -0.083 4.083 25 C -0.141 4.141 26 C 0.055 3.945 27 O -0.404 6.404 28 C 0.066 3.934 29 C -0.144 4.144 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.068 0.932 49 H 0.108 0.892 50 H 0.066 0.934 51 H 0.093 0.907 52 H 0.050 0.950 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 3.636 -27.516 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.285 6.285 4 C 0.027 3.973 5 H 0.133 0.867 6 C 0.274 3.726 7 O -0.459 6.459 8 N -0.334 5.334 9 C -0.025 4.025 10 C -0.163 4.163 11 C -0.168 4.168 12 C 0.059 3.941 13 H 0.047 0.953 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.091 0.909 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.223 1.223 23 C -0.005 4.005 24 C -0.102 4.102 25 C -0.178 4.178 26 C -0.021 4.021 27 O -0.324 6.324 28 C -0.011 4.011 29 C -0.182 4.182 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.133 0.867 46 H 0.085 0.915 47 H 0.122 0.878 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.085 0.915 51 H 0.111 0.889 52 H 0.069 0.931 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.547 3.736 -27.103 28.977 hybrid contribution 0.658 -0.858 2.127 2.387 sum -8.889 2.878 -24.975 26.666 Atomic orbital electron populations 1.21708 0.92666 1.03294 1.02555 1.22740 0.96774 0.82956 1.00268 1.87983 1.18702 1.27672 1.94162 1.22128 0.83398 1.01775 0.90012 0.86658 1.22107 0.81837 0.75383 0.93288 1.90691 1.55999 1.51211 1.48027 1.48225 1.05736 1.72174 1.07237 1.22323 0.90772 1.00227 0.89146 1.21913 0.99326 0.98350 0.96672 1.22067 0.98288 1.01469 0.94976 1.20726 0.92428 0.95372 0.85580 0.95286 1.42510 1.71005 1.07506 1.16622 1.19570 1.29978 0.88729 0.98716 0.90873 1.25558 1.03048 0.99658 0.98407 1.69820 1.51709 1.24463 1.15896 0.85091 0.77341 0.79335 0.78105 1.19046 1.21699 1.22306 1.21651 0.96932 0.98639 0.83310 1.21596 1.01850 0.90978 0.95751 1.22184 1.02704 0.99680 0.93280 1.22801 0.98711 0.84855 0.95740 1.87914 1.68392 1.51303 1.24749 1.22566 0.99532 0.96851 0.82105 1.22100 1.01570 0.95900 0.98669 0.89215 0.93763 0.90940 0.90362 0.95472 0.86353 0.89132 0.91910 0.87454 0.93509 0.92376 0.79523 0.93969 0.91237 0.92633 0.86701 0.91465 0.87801 0.91331 0.87359 0.91548 0.88917 0.93138 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.05 0.98 6.46 71.98 0.46 1.45 16 3 O -0.37 -8.84 8.08 -129.99 -1.05 -9.89 16 4 C 0.09 1.79 1.43 29.85 0.04 1.83 16 5 H 0.12 1.60 7.08 -2.39 -0.02 1.59 16 6 C 0.49 14.42 5.91 87.66 0.52 14.94 16 7 O -0.58 -23.71 15.92 15.98 0.25 -23.45 16 8 N -0.60 -16.33 2.97 -818.01 -2.43 -18.76 16 9 C 0.10 1.64 4.97 86.37 0.43 2.07 16 10 C -0.12 -2.45 6.08 30.67 0.19 -2.26 16 11 C -0.13 -4.02 5.46 30.62 0.17 -3.85 16 12 C 0.17 6.69 2.94 45.23 0.13 6.82 16 13 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 14 N -0.74 -37.61 5.13 -321.81 -1.65 -39.26 16 15 C -0.24 -13.34 9.93 84.03 0.83 -12.51 16 16 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 17 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 18 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 19 Si 0.97 46.51 29.55 68.60 2.03 48.53 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 23 C 0.12 4.29 5.94 86.52 0.51 4.80 16 24 C -0.08 -1.29 1.74 -10.63 -0.02 -1.30 16 25 C -0.14 -1.59 5.31 30.69 0.16 -1.42 16 26 C 0.06 0.61 6.84 72.01 0.49 1.11 16 27 O -0.40 -7.42 10.77 -148.98 -1.60 -9.03 16 28 C 0.07 1.13 6.84 72.02 0.49 1.63 16 29 C -0.14 -3.02 5.01 30.73 0.15 -2.86 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 34 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.12 1.16 4.67 -2.38 -0.01 1.15 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 41 H 0.37 20.45 7.80 -92.71 -0.72 19.73 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.06 2.41 7.00 -2.39 -0.02 2.39 16 45 H 0.12 1.28 5.43 -2.39 -0.01 1.26 16 46 H 0.07 1.03 7.60 -2.39 -0.02 1.01 16 47 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.05 1.27 7.37 -2.39 -0.02 1.25 16 53 H 0.06 1.52 7.60 -2.39 -0.02 1.50 16 Total: -1.00 -77.75 406.41 1.78 -75.97 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.16 Total: 30.59 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.78 Total: 4.78 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -3.79 Total: -117.51 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -2.40 Total: -42.37 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -77.75 1.78 -75.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208807808.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.256 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds