Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47098 * 2 1 4 4 C 1.42903 * 113.99742 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.46906 * 30.00668 * 4 3 2 6 6 C 1.50691 * 109.47067 * 270.00001 * 4 3 2 7 7 O 1.21274 * 120.00649 * 353.23280 * 6 4 3 8 8 N 1.34780 * 119.99607 * 173.22814 * 6 4 3 9 9 C 1.46926 * 120.62891 * 175.17402 * 8 6 4 10 10 C 1.53195 * 108.77837 * 126.66623 * 9 8 6 11 11 C 1.53040 * 109.31186 * 54.63003 * 10 9 8 12 12 C 1.53041 * 109.54028 * 298.63684 * 11 10 9 13 13 H 1.08995 * 109.52186 * 301.39654 * 12 11 10 14 14 N 1.46502 * 109.49623 * 181.31779 * 12 11 10 15 15 C 1.36933 * 119.99834 * 85.16254 * 14 12 11 16 16 H 1.07993 * 120.00191 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99755 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00045 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47360 * 89.99890 * 19 17 15 21 21 H 1.48507 * 109.46805 * 210.00221 * 19 17 15 22 22 H 1.48499 * 109.47015 * 329.99446 * 19 17 15 23 23 C 1.46926 * 120.63169 * 355.44769 * 8 6 4 24 24 C 1.53001 * 109.46494 * 150.00191 * 4 3 2 25 25 C 1.53181 * 109.54392 * 57.67502 * 24 4 3 26 26 C 1.53095 * 109.16225 * 183.15280 * 25 24 4 27 27 O 1.42899 * 109.41785 * 57.60034 * 26 25 24 28 28 C 1.42900 * 114.10128 * 298.84491 * 27 26 25 29 29 C 1.53091 * 109.41331 * 61.15687 * 28 27 26 30 30 H 1.09006 * 109.46579 * 299.99657 * 1 2 3 31 31 H 1.08998 * 109.47169 * 59.99756 * 1 2 3 32 32 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46579 * 240.00343 * 2 1 3 34 34 H 1.08998 * 109.47169 * 120.00244 * 2 1 3 35 35 H 1.09004 * 109.58426 * 246.45286 * 9 8 6 36 36 H 1.08997 * 109.59027 * 6.87612 * 9 8 6 37 37 H 1.08997 * 109.49733 * 294.67854 * 10 9 8 38 38 H 1.08996 * 109.49559 * 174.58052 * 10 9 8 39 39 H 1.08996 * 109.45845 * 178.61585 * 11 10 9 40 40 H 1.09002 * 109.45096 * 58.65444 * 11 10 9 41 41 H 0.96996 * 119.99539 * 265.16055 * 14 12 11 42 42 H 0.96999 * 119.99805 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.58494 * 353.12492 * 23 8 6 44 44 H 1.08998 * 109.58561 * 113.40635 * 23 8 6 45 45 H 1.09002 * 109.53979 * 177.93440 * 24 4 3 46 46 H 1.09001 * 109.51796 * 303.05374 * 25 24 4 47 47 H 1.08995 * 109.52216 * 63.24135 * 25 24 4 48 48 H 1.09004 * 109.47849 * 297.61878 * 26 25 24 49 49 H 1.08998 * 109.48039 * 177.59042 * 26 25 24 50 50 H 1.09002 * 109.47931 * 301.17428 * 28 27 26 51 51 H 1.08996 * 109.48852 * 181.14304 * 28 27 26 52 52 H 1.08994 * 109.52177 * 182.48637 * 29 28 27 53 53 H 1.09003 * 109.57622 * 62.32857 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6016 -0.5130 6 6 3.9311 1.4999 1.4215 7 8 3.1423 1.5618 2.3406 8 7 5.2551 1.4667 1.6710 9 6 5.7623 1.6109 3.0424 10 6 6.6887 0.4308 3.3522 11 6 7.7810 0.3506 2.2832 12 6 7.1403 0.1151 0.9135 13 1 6.5594 -0.8068 0.9367 14 7 8.1884 0.0071 -0.1045 15 6 8.7992 -1.1969 -0.3332 16 1 8.5087 -2.0668 0.2371 17 6 9.7919 -1.2994 -1.2980 18 7 10.1456 -0.2393 -1.9934 19 14 10.6247 -2.9420 -1.6105 20 1 9.8772 -3.6849 -2.6567 21 1 12.0187 -2.7111 -2.0677 22 1 10.6404 -3.7357 -0.3555 23 6 6.2191 1.2917 0.5761 24 6 3.8409 2.7456 -0.7207 25 6 3.1866 3.9489 -0.0349 26 6 3.5384 5.2216 -0.8097 27 8 3.1045 5.0881 -2.1647 28 6 3.7188 4.0080 -2.8704 29 6 3.3742 2.6866 -2.1784 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 6.3180 2.5445 3.1302 36 1 4.9270 1.6133 3.7426 37 1 6.1119 -0.4941 3.3531 38 1 7.1471 0.5752 4.3305 39 1 8.4559 -0.4733 2.5149 40 1 8.3415 1.2853 2.2661 41 1 8.4495 0.7885 -0.6164 42 1 10.8396 -0.3108 -2.6674 43 1 5.6851 1.0834 -0.3510 44 1 6.8103 2.2001 0.4610 45 1 4.9253 2.8515 -0.6890 46 1 2.1046 3.8173 -0.0227 47 1 3.5560 4.0309 0.9873 48 1 4.6175 5.3744 -0.7870 49 1 3.0405 6.0758 -0.3510 50 1 4.8002 4.1448 -2.8746 51 1 3.3509 3.9878 -3.8962 52 1 3.8777 1.8658 -2.6891 53 1 2.2961 2.5283 -2.2095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208807813.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -144.080048 kcal Electronic energy + Delta-G solvation = -32427.261945 eV Core-core repulsion = 28298.051906 eV Total energy + Delta-G solvation = -4129.210038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.88936 -40.14969 -39.16948 -38.20022 -36.06938 -35.46192 -33.74852 -33.03107 -32.06702 -32.01478 -30.06687 -29.02209 -26.47520 -25.73241 -24.58178 -24.53075 -23.76856 -23.15429 -21.67314 -21.03109 -20.31836 -19.20909 -18.48600 -17.84741 -17.38443 -17.07074 -16.81494 -16.57784 -16.32504 -15.91142 -15.79168 -15.64276 -15.45134 -15.28349 -15.10912 -14.81705 -14.74582 -14.59396 -14.08614 -13.93472 -13.66875 -13.31860 -13.22497 -12.98693 -12.95869 -12.89555 -12.81796 -12.45838 -12.32527 -12.23497 -12.13864 -12.11014 -12.08307 -11.87878 -11.77077 -11.69166 -11.57831 -11.31688 -11.19474 -10.91265 -10.55810 -10.21268 -9.72625 -9.00618 -7.93732 -5.22082 1.43784 1.49204 1.50118 1.57513 1.79893 2.55569 2.61476 2.98340 3.24477 3.39703 3.54039 3.62891 3.83921 3.86345 3.94286 3.98068 4.03058 4.07013 4.10460 4.15980 4.27101 4.32678 4.34917 4.36103 4.38099 4.43188 4.53335 4.59215 4.67059 4.70335 4.70941 4.78881 4.79967 4.82710 4.88838 4.91667 4.99798 5.01646 5.06869 5.11175 5.16346 5.22694 5.34512 5.38640 5.44499 5.49568 5.56835 6.00414 6.25860 6.27721 6.31942 7.04840 7.36079 8.07029 8.32516 9.28819 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.003579 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.547860 B = 7821.726385 C = 8524.752972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 O -0.362 6.362 4 C 0.083 3.917 5 H 0.093 0.907 6 C 0.497 3.503 7 O -0.565 6.565 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.120 4.120 11 C -0.129 4.129 12 C 0.165 3.835 13 H 0.037 0.963 14 N -0.729 5.729 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.064 4.064 18 N -0.963 5.963 19 Si 0.963 3.037 20 H -0.288 1.288 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.110 3.890 24 C -0.081 4.081 25 C -0.137 4.137 26 C 0.063 3.937 27 O -0.399 6.399 28 C 0.058 3.942 29 C -0.143 4.143 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.104 0.896 50 H 0.058 0.942 51 H 0.109 0.891 52 H 0.085 0.915 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 6.856 3.392 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 O -0.280 6.280 4 C 0.021 3.979 5 H 0.111 0.889 6 C 0.285 3.715 7 O -0.444 6.444 8 N -0.334 5.334 9 C -0.011 4.011 10 C -0.159 4.159 11 C -0.169 4.169 12 C 0.056 3.944 13 H 0.055 0.945 14 N -0.370 5.370 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.257 4.257 18 N -0.613 5.613 19 Si 0.793 3.207 20 H -0.215 1.215 21 H -0.224 1.224 22 H -0.199 1.199 23 C -0.013 4.013 24 C -0.100 4.100 25 C -0.175 4.175 26 C -0.014 4.014 27 O -0.319 6.319 28 C -0.018 4.018 29 C -0.181 4.181 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.122 0.878 50 H 0.076 0.924 51 H 0.127 0.873 52 H 0.103 0.897 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.641 6.977 3.800 17.543 hybrid contribution 1.332 -1.286 -0.088 1.853 sum -14.310 5.691 3.712 15.841 Atomic orbital electron populations 1.21692 0.92034 1.03379 1.02793 1.22747 0.97125 0.82984 1.00059 1.87963 1.18186 1.27542 1.94308 1.22054 0.83509 1.00967 0.91367 0.88919 1.21599 0.81882 0.75438 0.92563 1.90646 1.55387 1.51142 1.47250 1.48170 1.05227 1.71074 1.08909 1.21705 0.97979 0.98993 0.82446 1.21827 0.96554 0.97956 0.99568 1.22102 0.97782 1.01375 0.95663 1.20619 0.89042 0.95796 0.88971 0.94481 1.42397 1.42530 1.09179 1.42879 1.19465 1.13628 0.88931 1.14919 0.91163 1.25383 1.00814 1.00015 0.99527 1.69775 1.34494 1.29507 1.27506 0.85305 0.77406 0.80134 0.77898 1.21496 1.22364 1.19901 1.22051 0.91014 0.99014 0.89236 1.21402 1.00954 0.91924 0.95677 1.22039 1.01686 0.94920 0.98846 1.22641 0.99737 0.97251 0.81768 1.87896 1.67952 1.51412 1.24597 1.22706 0.97733 0.85054 0.96328 1.22162 1.02883 0.99298 0.93714 0.92840 0.91312 0.89191 0.91834 0.94763 0.89879 0.89782 0.92758 0.88932 0.93580 0.92226 0.79015 0.93996 0.89167 0.90096 0.88626 0.91430 0.92118 0.92312 0.87811 0.92395 0.87303 0.89667 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 10.28 71.98 0.74 -1.87 16 2 C 0.05 1.07 6.46 71.98 0.46 1.54 16 3 O -0.36 -9.63 8.08 -130.03 -1.05 -10.68 16 4 C 0.08 2.09 1.40 29.85 0.04 2.14 16 5 H 0.09 2.24 6.76 -2.39 -0.02 2.23 16 6 C 0.50 14.62 5.94 87.65 0.52 15.14 16 7 O -0.57 -20.14 15.93 15.94 0.25 -19.89 16 8 N -0.60 -16.25 2.97 -818.92 -2.43 -18.69 16 9 C 0.11 2.75 6.44 86.36 0.56 3.31 16 10 C -0.12 -3.04 6.08 30.67 0.19 -2.85 16 11 C -0.13 -4.09 5.47 30.62 0.17 -3.92 16 12 C 0.17 5.80 2.92 45.07 0.13 5.94 16 13 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 14 N -0.73 -32.88 5.12 -322.58 -1.65 -34.53 16 15 C -0.24 -12.23 9.93 84.03 0.83 -11.40 16 16 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 17 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 18 N -0.96 -54.98 13.06 21.65 0.28 -54.70 16 19 Si 0.96 43.88 29.55 68.60 2.03 45.90 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 C 0.11 3.10 4.41 86.36 0.38 3.48 16 24 C -0.08 -1.80 1.79 -10.67 -0.02 -1.82 16 25 C -0.14 -3.15 5.02 30.69 0.15 -2.99 16 26 C 0.06 1.26 6.84 72.01 0.49 1.75 16 27 O -0.40 -9.14 10.76 -148.98 -1.60 -10.74 16 28 C 0.06 1.11 6.84 72.01 0.49 1.61 16 29 C -0.14 -2.85 5.33 30.68 0.16 -2.68 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.25 8.09 -2.38 -0.02 1.23 16 34 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.79 16 36 H 0.08 2.21 7.00 -2.39 -0.02 2.19 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.38 18.00 7.80 -92.71 -0.72 17.28 16 42 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.09 2.43 5.04 -2.39 -0.01 2.42 16 44 H 0.08 2.16 8.13 -2.39 -0.02 2.14 16 45 H 0.10 2.07 5.97 -2.39 -0.01 2.06 16 46 H 0.07 1.78 7.54 -2.39 -0.02 1.76 16 47 H 0.06 1.50 7.41 -2.39 -0.02 1.48 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.07 1.61 7.66 -2.39 -0.02 1.60 16 Total: -1.00 -64.57 407.06 1.76 -62.81 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.16 Total: 36.16 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.78 Total: 4.37 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.80 Total: -107.92 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.40 Total: -41.31 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.57 1.76 -62.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208807813.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.273 kcal (2) G-P(sol) polarization free energy of solvation -64.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds