Wall clock time and date at job start Sat Apr 11 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42902 * 109.47552 * 2 1 4 4 C 1.42891 * 114.00129 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47033 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46973 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46973 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47151 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46978 * 179.97438 * 8 7 6 10 10 O 1.21274 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99551 * 180.02562 * 9 8 7 12 12 C 1.47163 * 120.20156 * 359.84280 * 11 9 8 13 13 C 1.53549 * 107.33147 * 130.26247 * 12 11 9 14 14 O 1.42652 * 108.38369 * 55.65299 * 13 12 11 15 15 C 1.42776 * 115.69323 * 295.54852 * 14 13 12 16 16 H 1.09001 * 112.22136 * 290.72543 * 15 14 13 17 17 C 1.55395 * 107.69230 * 166.34839 * 15 14 13 18 18 N 1.47479 * 104.78586 * 281.47053 * 17 15 14 19 19 C 1.36936 * 125.68896 * 155.63318 * 18 17 15 20 20 H 1.07999 * 120.00254 * 342.04058 * 19 18 17 21 21 C 1.38810 * 120.00022 * 162.03491 * 19 18 17 22 22 N 1.31620 * 120.00118 * 156.28729 * 21 19 18 23 23 Si 1.86802 * 120.00033 * 336.29501 * 21 19 18 24 24 H 1.48500 * 109.47300 * 84.65691 * 23 21 19 25 25 H 1.48498 * 109.47117 * 204.65300 * 23 21 19 26 26 H 1.48498 * 109.47094 * 324.65296 * 23 21 19 27 27 C 1.47216 * 108.62209 * 335.59787 * 18 17 15 28 28 C 1.45668 * 120.11408 * 180.02562 * 11 9 8 29 29 H 1.08998 * 109.95451 * 345.45133 * 28 11 9 30 30 H 1.09008 * 109.46935 * 59.99982 * 1 2 3 31 31 H 1.09003 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47562 * 300.00102 * 1 2 3 33 33 H 1.09001 * 109.47562 * 239.99898 * 2 1 3 34 34 H 1.09008 * 109.46935 * 120.00018 * 2 1 3 35 35 H 1.08999 * 109.47429 * 60.00358 * 4 3 2 36 36 H 1.09005 * 109.47437 * 300.00072 * 4 3 2 37 37 H 1.08999 * 109.47343 * 59.99833 * 5 4 3 38 38 H 1.09003 * 109.46906 * 299.99696 * 5 4 3 39 39 H 1.08999 * 109.47483 * 60.00240 * 6 5 4 40 40 H 1.09003 * 109.47032 * 299.99589 * 6 5 4 41 41 H 1.08999 * 109.47343 * 59.99803 * 7 6 5 42 42 H 1.09005 * 109.46969 * 300.00208 * 7 6 5 43 43 H 1.09005 * 109.46919 * 60.00475 * 8 7 6 44 44 H 1.08994 * 109.46973 * 299.99996 * 8 7 6 45 45 H 1.08995 * 109.84474 * 10.83929 * 12 11 9 46 46 H 1.09001 * 110.00343 * 249.77508 * 12 11 9 47 47 H 1.09006 * 109.67866 * 295.93511 * 13 12 11 48 48 H 1.09001 * 109.68298 * 175.38025 * 13 12 11 49 49 H 1.09009 * 110.37751 * 40.29578 * 17 15 14 50 50 H 1.08996 * 110.37899 * 162.52958 * 17 15 14 51 51 H 0.97007 * 120.00186 * 180.02562 * 22 21 19 52 52 H 1.08998 * 109.95790 * 241.89657 * 27 18 17 53 53 H 1.08997 * 109.96067 * 120.65509 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3507 3.0590 0.0012 7 6 5.7452 4.5373 0.0024 8 6 7.2704 4.6581 0.0030 9 6 7.6590 6.1141 0.0036 10 8 6.8006 6.9708 0.0031 11 7 8.9605 6.4642 0.0037 12 6 10.0057 5.4282 0.0067 13 6 10.9982 5.7765 -1.1119 14 8 11.4747 7.1032 -0.8936 15 6 10.4939 8.1365 -0.9873 16 1 10.1402 8.2778 -2.0086 17 6 11.1116 9.4299 -0.3870 18 7 11.0115 9.2520 1.0736 19 6 11.8053 9.8608 2.0087 20 1 12.7487 10.2967 1.7150 21 6 11.3973 9.9176 3.3343 22 7 12.2894 10.0564 4.2921 23 14 9.5822 9.7970 3.7589 24 1 9.1865 8.3680 3.8394 25 1 9.3353 10.4534 5.0679 26 1 8.7817 10.4739 2.7071 27 6 9.9153 8.3116 1.3586 28 6 9.3390 7.8708 0.0048 29 1 8.4780 8.4879 -0.2519 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8901 35 1 3.8340 0.9764 -0.8892 36 1 3.8333 0.9766 0.8908 37 1 3.4223 3.4216 0.8911 38 1 3.4230 3.4221 -0.8889 39 1 5.7534 2.5759 -0.8890 40 1 5.7534 2.5751 0.8910 41 1 5.3425 5.0201 0.8928 42 1 5.3424 5.0216 -0.8872 43 1 7.6735 4.1752 -0.8873 44 1 7.6728 4.1739 0.8927 45 1 9.5598 4.4521 -0.1842 46 1 10.5192 5.4193 0.9682 47 1 10.4966 5.7210 -2.0781 48 1 11.8347 5.0779 -1.0913 49 1 12.1552 9.5267 -0.6869 50 1 10.5438 10.3044 -0.7044 51 1 12.0043 10.0957 5.2185 52 1 9.1437 8.8071 1.9478 53 1 10.2986 7.4463 1.8993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219058607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:36 Heat of formation + Delta-G solvation = -124.902255 kcal Electronic energy + Delta-G solvation = -30335.128502 eV Core-core repulsion = 26206.750075 eV Total energy + Delta-G solvation = -4128.378427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.88981 -39.95647 -39.11808 -37.64877 -36.56098 -36.01005 -34.43750 -33.18445 -31.93661 -31.39566 -29.73065 -29.40015 -27.49262 -25.99829 -24.56896 -23.75422 -23.63313 -22.49219 -21.96061 -21.62943 -19.83442 -19.15998 -18.52399 -17.88397 -17.65304 -17.49328 -17.46410 -17.00744 -16.62518 -16.04859 -15.97272 -15.83353 -15.52726 -15.33485 -15.12645 -14.85593 -14.72102 -14.26031 -14.03421 -13.77766 -13.64599 -13.45989 -13.38272 -13.27089 -13.18654 -12.96893 -12.90821 -12.60675 -12.46385 -12.40491 -12.17978 -12.12127 -11.98998 -11.89949 -11.76754 -11.63061 -11.46503 -11.44193 -11.08387 -10.89006 -10.80585 -10.54216 -9.63079 -9.16394 -8.25875 -5.49157 1.18300 1.27357 1.35912 1.49674 1.74376 2.31385 2.71279 2.71878 2.94620 3.27140 3.35864 3.47325 3.67487 3.87655 3.93487 3.95283 4.00021 4.09914 4.12228 4.14154 4.18159 4.23423 4.30137 4.31445 4.46170 4.48013 4.48504 4.51908 4.59044 4.61535 4.67311 4.69833 4.78329 4.83355 4.87008 4.89307 4.92094 4.96617 4.97846 4.99942 5.03132 5.18660 5.25503 5.34369 5.38008 5.47114 5.58901 6.03329 6.26835 6.30418 6.33311 6.65890 7.04520 7.45505 8.01027 8.94152 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.002103 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.891255 B =13314.071335 C =14386.847730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.420 6.420 4 C 0.061 3.939 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.102 4.102 8 C -0.128 4.128 9 C 0.504 3.496 10 O -0.587 6.587 11 N -0.605 5.605 12 C 0.065 3.935 13 C 0.045 3.955 14 O -0.388 6.388 15 C 0.090 3.910 16 H 0.117 0.883 17 C 0.130 3.870 18 N -0.618 5.618 19 C -0.226 4.226 20 H 0.072 0.928 21 C -0.027 4.027 22 N -0.946 5.946 23 Si 0.941 3.059 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.283 1.283 27 C 0.122 3.878 28 C 0.107 3.893 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.134 0.866 44 H 0.116 0.884 45 H 0.145 0.855 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.131 0.869 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.263 0.737 52 H 0.004 0.996 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 -25.281 -15.573 33.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.341 6.341 4 C -0.015 4.015 5 C -0.157 4.157 6 C -0.142 4.142 7 C -0.140 4.140 8 C -0.168 4.168 9 C 0.295 3.705 10 O -0.467 6.467 11 N -0.337 5.337 12 C -0.056 4.056 13 C -0.031 4.031 14 O -0.306 6.306 15 C 0.031 3.969 16 H 0.134 0.866 17 C 0.006 3.994 18 N -0.345 5.345 19 C -0.355 4.355 20 H 0.090 0.910 21 C -0.222 4.222 22 N -0.593 5.593 23 Si 0.774 3.226 24 H -0.216 1.216 25 H -0.231 1.231 26 H -0.210 1.210 27 C -0.004 4.004 28 C 0.000 4.000 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.152 0.848 44 H 0.134 0.866 45 H 0.162 0.838 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.149 0.851 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.072 0.928 52 H 0.022 0.978 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.640 -24.591 -15.323 32.926 hybrid contribution -0.852 0.554 1.133 1.522 sum -16.491 -24.036 -14.190 32.420 Atomic orbital electron populations 1.21784 0.93341 1.03332 1.02492 1.22640 0.96121 0.82951 1.00925 1.87861 1.22524 1.28077 1.95632 1.22602 0.80405 0.97347 1.01147 1.21506 0.96668 0.95105 1.02444 1.21428 0.93795 0.94926 1.04003 1.21288 0.93425 0.97209 1.02107 1.21809 0.98311 0.89549 1.07088 1.21826 0.80888 0.93624 0.74168 1.90680 1.50133 1.54264 1.51622 1.47899 1.06973 1.05816 1.73052 1.22896 0.89573 0.92333 1.00804 1.23241 0.99019 0.83812 0.97060 1.87871 1.34664 1.15692 1.92402 1.23610 0.87407 0.88364 0.97516 0.86583 1.22026 1.00598 0.94358 0.82432 1.44727 1.37486 1.49559 1.02751 1.18641 0.98314 1.30684 0.87831 0.91006 1.25392 0.99902 1.01349 0.95571 1.69946 1.33788 1.55761 0.99760 0.86039 0.84035 0.77067 0.75489 1.21638 1.23121 1.21038 1.21643 0.89876 0.92459 0.96391 1.21888 0.98685 0.84197 0.95192 0.88640 0.92438 0.89119 0.92643 0.92335 0.92640 0.91926 0.92488 0.92653 0.91945 0.89352 0.90374 0.93674 0.92338 0.84802 0.86625 0.83767 0.91933 0.90505 0.85139 0.91708 0.92478 0.92763 0.97829 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.59 6.66 71.98 0.48 1.07 16 3 O -0.42 -7.46 10.34 -148.98 -1.54 -9.00 16 4 C 0.06 0.79 5.94 71.98 0.43 1.22 16 5 C -0.12 -1.74 5.58 30.60 0.17 -1.56 16 6 C -0.10 -1.13 5.21 30.60 0.16 -0.97 16 7 C -0.10 -1.76 4.50 30.59 0.14 -1.62 16 8 C -0.13 -1.96 4.05 29.85 0.12 -1.84 16 9 C 0.50 13.91 7.68 87.66 0.67 14.58 16 10 O -0.59 -21.89 15.39 -3.01 -0.05 -21.94 16 11 N -0.60 -17.06 2.75 -793.00 -2.18 -19.25 16 12 C 0.07 1.29 6.30 86.44 0.54 1.84 16 13 C 0.05 0.86 7.02 72.17 0.51 1.37 16 14 O -0.39 -11.89 10.14 -148.98 -1.51 -13.40 16 15 C 0.09 2.83 4.09 31.95 0.13 2.96 16 16 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 17 C 0.13 5.10 6.83 87.02 0.59 5.70 16 18 N -0.62 -31.09 3.22 -691.81 -2.22 -33.31 16 19 C -0.23 -13.43 10.57 84.03 0.89 -12.54 16 20 H 0.07 4.51 8.06 -2.91 -0.02 4.48 16 21 C -0.03 -1.65 5.44 84.86 0.46 -1.19 16 22 N -0.95 -60.98 13.97 21.65 0.30 -60.67 16 23 Si 0.94 51.28 24.39 68.60 1.67 52.96 16 24 H -0.29 -15.44 6.84 99.48 0.68 -14.76 16 25 H -0.30 -16.29 7.11 99.48 0.71 -15.58 16 26 H -0.28 -15.42 6.87 99.48 0.68 -14.73 16 27 C 0.12 5.72 4.80 86.44 0.41 6.14 16 28 C 0.11 3.83 3.04 45.87 0.14 3.97 16 29 H 0.10 3.68 7.06 -2.39 -0.02 3.66 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 42 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 43 H 0.13 1.02 7.61 -2.38 -0.02 1.00 16 44 H 0.12 1.36 8.00 -2.39 -0.02 1.34 16 45 H 0.14 1.33 5.97 -2.39 -0.01 1.32 16 46 H 0.06 1.54 7.63 -2.39 -0.02 1.52 16 47 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 50 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 51 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 52 H 0.00 0.23 3.56 -2.39 -0.01 0.22 16 53 H 0.03 1.28 7.35 -2.39 -0.02 1.26 16 Total: -1.00 -83.48 409.02 1.88 -81.60 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.81 Total: 4.71 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.59 Total: 18.30 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -4.10 Total: -113.23 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -3.10 Total: -44.33 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.67 Total: 52.96 kcal Total: -83.48 1.88 -81.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219058607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.302 kcal (2) G-P(sol) polarization free energy of solvation -83.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds