Wall clock time and date at job start Sat Apr 11 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42906 * 109.46892 * 2 1 4 4 C 1.42902 * 113.99853 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46957 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47281 * 65.00454 * 5 4 3 7 7 C 1.42892 * 114.00288 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47204 * 29.99358 * 7 6 5 9 9 C 1.53001 * 109.47290 * 269.99390 * 7 6 5 10 10 C 1.50700 * 109.47636 * 149.99353 * 7 6 5 11 11 O 1.21281 * 119.99757 * 4.99741 * 10 7 6 12 12 N 1.34774 * 120.00485 * 184.99717 * 10 7 6 13 13 C 1.45466 * 120.98705 * 0.50933 * 12 10 7 14 14 C 1.52832 * 108.87278 * 122.98900 * 13 12 10 15 15 C 1.53101 * 110.55176 * 56.47507 * 14 13 12 16 16 H 1.09003 * 112.48991 * 71.40793 * 15 14 13 17 17 C 1.56023 * 106.38777 * 195.46590 * 15 14 13 18 18 C 1.54499 * 102.61576 * 78.38746 * 17 15 14 19 19 N 1.47430 * 107.14797 * 22.84602 * 18 17 15 20 20 C 1.36938 * 126.06179 * 181.57494 * 19 18 17 21 21 H 1.08000 * 120.00560 * 174.13924 * 20 19 18 22 22 C 1.38812 * 119.99722 * 354.15065 * 20 19 18 23 23 N 1.31619 * 120.00225 * 6.72406 * 22 20 19 24 24 Si 1.86803 * 119.99905 * 186.73269 * 22 20 19 25 25 H 1.48499 * 109.47337 * 94.97839 * 24 22 20 26 26 H 1.48500 * 109.46818 * 214.97890 * 24 22 20 27 27 H 1.48499 * 109.46961 * 334.97490 * 24 22 20 28 28 C 1.48359 * 108.16491 * 1.48890 * 19 18 17 29 29 H 1.08998 * 108.31789 * 89.72417 * 28 19 18 30 30 C 1.46755 * 121.22243 * 180.02562 * 12 10 7 31 31 H 1.09000 * 109.46733 * 299.99705 * 1 2 3 32 32 H 1.08999 * 109.47439 * 59.99997 * 1 2 3 33 33 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46733 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47439 * 120.00003 * 2 1 3 36 36 H 1.09001 * 109.46966 * 59.99959 * 4 3 2 37 37 H 1.08997 * 109.47033 * 300.00446 * 4 3 2 38 38 H 1.08994 * 109.47198 * 304.99538 * 5 4 3 39 39 H 1.09006 * 109.46937 * 184.99927 * 5 4 3 40 40 H 1.09003 * 109.46791 * 59.99463 * 9 7 6 41 41 H 1.08993 * 109.47620 * 179.97438 * 9 7 6 42 42 H 1.08996 * 109.47266 * 300.00144 * 9 7 6 43 43 H 1.09001 * 110.00879 * 2.67956 * 13 12 10 44 44 H 1.08996 * 108.61816 * 242.47631 * 13 12 10 45 45 H 1.08993 * 109.25895 * 296.21108 * 14 13 12 46 46 H 1.08997 * 109.25341 * 176.73761 * 14 13 12 47 47 H 1.09004 * 110.77809 * 196.66230 * 17 15 14 48 48 H 1.08999 * 110.78611 * 320.10012 * 17 15 14 49 49 H 1.08993 * 109.90584 * 142.23090 * 18 17 15 50 50 H 1.09000 * 109.89817 * 263.29017 * 18 17 15 51 51 H 0.97001 * 120.00008 * 180.02562 * 23 22 20 52 52 H 1.09001 * 109.22449 * 112.24733 * 30 12 10 53 53 H 1.09000 * 109.22860 * 352.88662 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 8 3.3986 3.5458 1.2199 7 6 3.7193 4.9346 1.3214 8 1 3.7307 5.3786 0.3259 9 6 5.0974 5.0940 1.9667 10 6 2.6844 5.6286 2.1690 11 8 1.8147 4.9826 2.7142 12 7 2.7253 6.9670 2.3213 13 6 3.7523 7.7641 1.6685 14 6 3.0770 8.8202 0.7941 15 6 2.1251 9.6807 1.6292 16 1 2.6545 10.3540 2.3033 17 6 1.2092 10.4344 0.6156 18 6 0.1878 9.3480 0.2113 19 7 0.1623 8.3501 1.2962 20 6 -0.5893 7.2056 1.3213 21 1 -0.4625 6.4937 2.1235 22 6 -1.5139 6.9604 0.3154 23 7 -1.5764 7.7579 -0.7298 24 14 -2.6697 5.4986 0.4453 25 1 -3.9591 5.9380 1.0366 26 1 -2.9116 4.9371 -0.9080 27 1 -2.0572 4.4587 1.3105 28 6 1.0952 8.7984 2.3591 29 1 0.5414 9.4234 3.0597 30 6 1.7316 7.6701 3.1410 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8333 0.9768 -0.8908 37 1 3.8340 0.9765 0.8891 38 1 3.3493 3.4412 -0.8429 39 1 4.9082 3.0255 -0.0912 40 1 5.8459 4.5920 1.3535 41 1 5.3422 6.1533 2.0437 42 1 5.0860 4.6500 2.9621 43 1 4.3847 7.1250 1.0522 44 1 4.3549 8.2508 2.4352 45 1 2.5137 8.3253 0.0031 46 1 3.8396 9.4580 0.3473 47 1 0.7095 11.2750 1.0970 48 1 1.7822 10.7677 -0.2497 49 1 -0.8001 9.7931 0.0933 50 1 0.4965 8.8775 -0.7221 51 1 -2.2228 7.5867 -1.4325 52 1 2.2199 8.0773 4.0264 53 1 0.9585 6.9666 3.4499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224217137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:47 Heat of formation + Delta-G solvation = -115.770170 kcal Electronic energy + Delta-G solvation = -32590.483011 eV Core-core repulsion = 28462.500581 eV Total energy + Delta-G solvation = -4127.982430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58471 -39.97874 -39.19925 -38.16334 -36.66806 -34.69444 -33.52040 -32.73487 -32.16597 -30.51817 -30.07310 -29.75839 -26.60525 -26.14224 -24.41097 -23.87249 -23.75769 -23.44873 -21.71800 -21.19965 -19.74275 -18.57505 -18.36010 -17.98139 -17.75140 -17.10823 -16.87725 -16.72992 -16.17290 -16.02654 -15.77784 -15.76289 -15.37734 -15.05232 -14.77870 -14.31339 -14.30509 -14.12685 -13.81404 -13.71572 -13.68180 -13.32488 -13.26515 -13.21094 -13.03496 -12.77655 -12.68165 -12.66026 -12.49293 -12.33623 -12.31531 -12.16735 -12.06891 -11.88695 -11.64745 -11.38589 -11.25193 -11.14912 -10.86483 -10.67759 -10.58577 -10.36159 -9.48098 -8.81300 -7.87876 -5.15319 1.30321 1.32838 1.45497 1.66941 1.92638 2.44987 2.74169 2.85443 3.30829 3.45741 3.62149 3.83089 3.87893 3.94141 4.01035 4.06778 4.09477 4.14113 4.21055 4.25684 4.29626 4.39230 4.42574 4.43693 4.47931 4.49929 4.58860 4.64387 4.67201 4.74035 4.77640 4.79756 4.80692 4.89022 4.91517 4.93080 5.03763 5.15254 5.16002 5.17787 5.23116 5.33506 5.52587 5.66534 5.70862 5.74164 5.81242 6.09688 6.21245 6.32814 6.59953 7.14134 7.33059 7.80485 8.43737 9.22979 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.004918 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.169670 B = 5691.969069 C = 7911.060090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.054 3.946 3 O -0.424 6.424 4 C 0.061 3.939 5 C 0.053 3.947 6 O -0.387 6.387 7 C 0.075 3.925 8 H 0.092 0.908 9 C -0.163 4.163 10 C 0.504 3.496 11 O -0.582 6.582 12 N -0.590 5.590 13 C 0.098 3.902 14 C -0.122 4.122 15 C -0.083 4.083 16 H 0.126 0.874 17 C -0.128 4.128 18 C 0.187 3.813 19 N -0.609 5.609 20 C -0.200 4.200 21 H 0.060 0.940 22 C -0.062 4.062 23 N -0.946 5.946 24 Si 0.947 3.053 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.293 1.293 28 C 0.137 3.863 29 H 0.031 0.969 30 C 0.118 3.882 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.030 0.970 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.084 0.916 49 H -0.001 1.001 50 H 0.002 0.998 51 H 0.243 0.757 52 H 0.100 0.900 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.451 -3.814 1.505 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 O -0.344 6.344 4 C -0.015 4.015 5 C -0.023 4.023 6 O -0.306 6.306 7 C 0.014 3.986 8 H 0.109 0.891 9 C -0.220 4.220 10 C 0.292 3.708 11 O -0.461 6.461 12 N -0.323 5.323 13 C -0.024 4.024 14 C -0.160 4.160 15 C -0.102 4.102 16 H 0.144 0.856 17 C -0.166 4.166 18 C 0.063 3.937 19 N -0.334 5.334 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.255 4.255 23 N -0.597 5.597 24 Si 0.778 3.222 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.031 3.969 29 H 0.048 0.952 30 C -0.006 4.006 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.049 0.951 46 H 0.126 0.874 47 H 0.086 0.914 48 H 0.103 0.897 49 H 0.017 0.983 50 H 0.021 0.979 51 H 0.052 0.948 52 H 0.118 0.882 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.617 -4.215 1.820 21.122 hybrid contribution -1.748 -1.114 -0.469 2.125 sum 18.869 -5.329 1.352 19.653 Atomic orbital electron populations 1.21817 0.94600 1.03319 1.01637 1.22615 0.95323 0.82946 1.01306 1.88053 1.22562 1.28177 1.95618 1.22733 0.81087 0.95360 1.02358 1.22934 1.00375 0.92960 0.86018 1.88064 1.82013 1.21431 1.39057 1.21978 0.94405 0.83077 0.99163 0.89073 1.22381 0.92661 1.05141 1.01790 1.21093 0.85608 0.82657 0.81453 1.90670 1.38901 1.66165 1.50323 1.47509 1.30245 1.05050 1.49525 1.21970 0.89421 0.93652 0.97336 1.21855 0.98745 0.97604 0.97822 1.22399 0.94776 0.96230 0.96770 0.85621 1.23021 0.97121 0.96900 0.99602 1.20948 0.94989 0.88147 0.89659 1.44951 1.47649 1.22436 1.18403 1.19049 1.11487 0.96388 1.06128 0.92219 1.25249 1.01611 1.01086 0.97536 1.70133 1.38914 1.40484 1.10146 0.85487 0.80127 0.80133 0.76425 1.20871 1.21772 1.21914 1.21394 0.90896 0.93673 0.90924 0.95152 1.21262 0.91474 0.94333 0.93531 0.94360 0.93145 0.88048 0.90973 0.92453 0.88496 0.91922 0.93789 0.87334 0.88498 0.87890 0.92367 0.87779 0.87414 0.95087 0.87393 0.91408 0.89714 0.98265 0.97928 0.94787 0.88171 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.28 71.98 0.74 -3.46 16 2 C 0.05 1.36 6.66 71.98 0.48 1.84 16 3 O -0.42 -14.42 10.31 -144.34 -1.49 -15.90 16 4 C 0.06 1.47 6.32 71.98 0.45 1.92 16 5 C 0.05 1.36 6.13 71.98 0.44 1.80 16 6 O -0.39 -13.74 9.49 -125.59 -1.19 -14.94 16 7 C 0.07 2.28 2.30 29.85 0.07 2.35 16 8 H 0.09 2.55 7.15 -2.38 -0.02 2.53 16 9 C -0.16 -3.03 9.10 71.98 0.66 -2.37 16 10 C 0.50 20.54 7.12 87.66 0.62 21.16 16 11 O -0.58 -31.18 15.96 15.96 0.25 -30.92 16 12 N -0.59 -20.13 2.95 -827.30 -2.44 -22.57 16 13 C 0.10 2.16 5.01 86.52 0.43 2.60 16 14 C -0.12 -3.15 5.07 30.57 0.15 -3.00 16 15 C -0.08 -2.35 3.63 -9.37 -0.03 -2.38 16 16 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.13 -4.30 6.33 32.15 0.20 -4.10 16 18 C 0.19 9.29 4.62 86.71 0.40 9.69 16 19 N -0.61 -31.84 3.24 -669.49 -2.17 -34.01 16 20 C -0.20 -12.32 9.77 84.03 0.82 -11.50 16 21 H 0.06 3.90 6.59 -2.91 -0.02 3.88 16 22 C -0.06 -3.93 5.48 84.86 0.47 -3.46 16 23 N -0.95 -60.77 10.43 21.65 0.23 -60.55 16 24 Si 0.95 53.17 29.56 68.60 2.03 55.20 16 25 H -0.28 -15.17 7.11 99.48 0.71 -14.47 16 26 H -0.29 -16.07 7.11 99.48 0.71 -15.36 16 27 H -0.29 -17.12 7.11 99.48 0.71 -16.41 16 28 C 0.14 5.38 3.04 44.42 0.14 5.51 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 C 0.12 4.40 5.73 85.78 0.49 4.89 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.24 8.08 -2.39 -0.02 1.22 16 39 H 0.11 1.70 7.87 -2.38 -0.02 1.68 16 40 H 0.10 1.21 7.87 -2.39 -0.02 1.20 16 41 H 0.10 1.38 5.41 -2.39 -0.01 1.37 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.83 4.54 -2.39 -0.01 1.82 16 44 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 46 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.08 2.44 7.97 -2.39 -0.02 2.42 16 49 H 0.00 -0.05 7.44 -2.39 -0.02 -0.07 16 50 H 0.00 0.14 7.20 -2.39 -0.02 0.12 16 51 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 52 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 53 H 0.04 2.13 5.68 -2.39 -0.01 2.12 16 Total: -1.00 -93.84 404.82 2.63 -91.21 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.88 Total: 10.98 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 6.53 Total: 21.51 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.38 Total: -117.13 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -2.42 Total: -61.76 kcal Atomic # 14 Polarization: 53.17 SS G_CDS: 2.03 Total: 55.20 kcal Total: -93.84 2.63 -91.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224217137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.559 kcal (2) G-P(sol) polarization free energy of solvation -93.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds