Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47007 * 2 1 4 4 C 1.42898 * 113.99887 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46951 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46598 * 65.00349 * 5 4 3 7 7 C 1.42902 * 113.99877 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47087 * 330.00052 * 7 6 5 9 9 C 1.53007 * 109.46897 * 89.99729 * 7 6 5 10 10 C 1.50695 * 109.47542 * 209.99892 * 7 6 5 11 11 O 1.21280 * 119.99803 * 349.82045 * 10 7 6 12 12 N 1.34776 * 120.00481 * 169.81507 * 10 7 6 13 13 C 1.47156 * 121.21185 * 4.74363 * 12 10 7 14 14 C 1.53338 * 107.71598 * 122.68586 * 13 12 10 15 15 C 1.53094 * 110.49660 * 57.57218 * 14 13 12 16 16 H 1.09001 * 113.05505 * 70.86665 * 15 14 13 17 17 C 1.56025 * 106.39339 * 195.28926 * 15 14 13 18 18 C 1.54506 * 102.61234 * 78.38449 * 17 15 14 19 19 N 1.47443 * 107.14591 * 22.84084 * 18 17 15 20 20 C 1.36936 * 126.05661 * 181.66295 * 19 18 17 21 21 H 1.08000 * 119.99616 * 174.10688 * 20 19 18 22 22 C 1.38808 * 120.00383 * 354.10215 * 20 19 18 23 23 N 1.31620 * 119.99854 * 7.09597 * 22 20 19 24 24 Si 1.86796 * 120.00333 * 187.09787 * 22 20 19 25 25 H 1.48497 * 109.47376 * 94.98268 * 24 22 20 26 26 H 1.48502 * 109.47349 * 214.98226 * 24 22 20 27 27 H 1.48502 * 109.47215 * 334.98373 * 24 22 20 28 28 C 1.46462 * 107.87784 * 1.62949 * 19 18 17 29 29 H 1.08993 * 108.42379 * 89.23495 * 28 19 18 30 30 C 1.46750 * 121.21682 * 185.01890 * 12 10 7 31 31 H 1.08998 * 109.47460 * 299.99961 * 1 2 3 32 32 H 1.09003 * 109.47288 * 59.99908 * 1 2 3 33 33 H 1.08998 * 109.47139 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.46974 * 240.00139 * 2 1 3 35 35 H 1.08999 * 109.46826 * 120.00035 * 2 1 3 36 36 H 1.08993 * 109.47299 * 299.99705 * 4 3 2 37 37 H 1.08996 * 109.46865 * 60.00344 * 4 3 2 38 38 H 1.09001 * 109.47105 * 184.99971 * 5 4 3 39 39 H 1.08999 * 109.47331 * 305.00522 * 5 4 3 40 40 H 1.08993 * 109.47012 * 56.02139 * 9 7 6 41 41 H 1.09003 * 109.46841 * 176.01544 * 9 7 6 42 42 H 1.08991 * 109.47256 * 296.01646 * 9 7 6 43 43 H 1.08997 * 109.76018 * 242.33629 * 13 12 10 44 44 H 1.09003 * 109.75817 * 3.09831 * 13 12 10 45 45 H 1.09000 * 109.39480 * 297.24971 * 14 13 12 46 46 H 1.08992 * 109.16220 * 177.75197 * 14 13 12 47 47 H 1.08996 * 110.78333 * 320.10521 * 17 15 14 48 48 H 1.08998 * 110.94224 * 196.73691 * 17 15 14 49 49 H 1.09001 * 109.90086 * 263.46428 * 18 17 15 50 50 H 1.09003 * 110.05121 * 142.30364 * 18 17 15 51 51 H 0.97007 * 120.00151 * 179.97438 * 23 22 20 52 52 H 1.09000 * 109.22904 * 352.84043 * 30 12 10 53 53 H 1.09009 * 109.22793 * 112.24273 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3974 3.5461 1.2204 7 6 3.7191 4.9347 1.3223 8 1 4.6315 5.1384 0.7619 9 6 2.5711 5.7675 0.7481 10 6 3.9274 5.2972 2.7701 11 8 3.6345 4.5061 3.6415 12 7 4.4392 6.5005 3.0967 13 6 4.7076 7.5193 2.0694 14 6 3.9188 8.7795 2.4447 15 6 4.3138 9.2627 3.8426 16 1 5.3172 9.6869 3.8800 17 6 3.2115 10.2736 4.2869 18 6 2.0560 9.3439 4.7201 19 7 2.6514 8.0371 5.0543 20 6 1.9692 6.9190 5.4539 21 1 2.4938 5.9839 5.5830 22 6 0.6036 6.9876 5.6929 23 7 -0.0609 8.0862 5.4031 24 14 -0.2911 5.5209 6.4261 25 1 -0.3837 5.6833 7.8993 26 1 -1.6575 5.4363 5.8506 27 1 0.4565 4.2770 6.1113 28 6 4.1018 8.1468 4.8825 29 1 4.5360 8.4811 5.8246 30 6 4.7548 6.8402 4.4890 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8332 0.9768 0.8908 37 1 3.8339 0.9765 -0.8892 38 1 4.9082 3.0255 -0.0892 39 1 3.3498 3.4410 -0.8424 40 1 1.6445 5.5118 1.2618 41 1 2.7847 6.8270 0.8898 42 1 2.4666 5.5572 -0.3162 43 1 5.7740 7.7432 2.0421 44 1 4.3819 7.1549 1.0951 45 1 2.8519 8.5566 2.4295 46 1 4.1323 9.5645 1.7193 47 1 2.9073 10.9055 3.4526 48 1 3.5544 10.8805 5.1249 49 1 1.3452 9.2293 3.9017 50 1 1.5520 9.7565 5.5941 51 1 -1.0153 8.1340 5.5698 52 1 4.3930 6.0468 5.1430 53 1 5.8354 6.9321 4.6001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224217141.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -89.008821 kcal Electronic energy + Delta-G solvation = -32373.688631 eV Core-core repulsion = 28246.866660 eV Total energy + Delta-G solvation = -4126.821971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.13821 -38.70944 -38.01675 -36.91785 -34.98663 -32.75651 -32.42090 -31.44905 -30.72185 -29.11726 -28.70720 -28.24821 -24.97604 -24.36975 -23.08608 -22.88454 -22.53259 -22.37491 -19.99006 -19.74716 -18.16202 -17.26278 -16.96567 -16.73396 -16.43561 -15.89063 -15.31055 -15.08953 -14.87146 -14.59883 -14.47459 -14.18157 -13.95513 -13.67138 -13.57976 -13.06774 -12.95958 -12.76991 -12.57338 -12.46773 -12.17336 -11.98654 -11.87151 -11.62327 -11.51968 -11.45706 -11.32887 -11.24209 -11.13530 -10.90384 -10.85362 -10.71120 -10.60917 -10.01907 -9.81624 -9.79588 -9.70850 -9.69114 -9.57324 -9.41880 -8.94598 -8.42866 -8.05202 -6.68156 -5.57062 -2.87575 3.07091 3.20385 3.55001 3.55835 3.60689 3.69606 3.96773 4.67118 4.74087 4.85233 4.92032 4.97799 5.03568 5.07109 5.11878 5.14444 5.19361 5.22721 5.29381 5.32017 5.37983 5.52195 5.54587 5.56226 5.64833 5.71369 5.74680 5.80137 5.80787 5.83815 5.84579 6.01363 6.04578 6.06848 6.16765 6.29679 6.33856 6.42783 6.48481 6.52363 6.66892 6.78457 6.97305 7.04503 7.13147 7.27462 7.65822 7.73122 7.94748 8.01831 8.38239 8.78205 9.38073 9.98940 10.62746 11.55824 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.004005 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.431105 B = 6989.656590 C = 8766.209465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.346 6.346 7 C 0.077 3.923 8 H 0.076 0.924 9 C -0.175 4.175 10 C 0.521 3.479 11 O -0.510 6.510 12 N -0.595 5.595 13 C 0.102 3.898 14 C -0.123 4.123 15 C -0.102 4.102 16 H 0.075 0.925 17 C -0.144 4.144 18 C 0.177 3.823 19 N -0.587 5.587 20 C -0.212 4.212 21 H 0.084 0.916 22 C -0.006 4.006 23 N -0.925 5.925 24 Si 0.900 3.100 25 H -0.292 1.292 26 H -0.294 1.294 27 H -0.276 1.276 28 C 0.154 3.846 29 H 0.026 0.974 30 C 0.115 3.885 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.041 0.959 50 H 0.043 0.957 51 H 0.248 0.752 52 H 0.095 0.905 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 -5.442 -15.139 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.010 4.010 5 C -0.016 4.016 6 O -0.264 6.264 7 C 0.015 3.985 8 H 0.093 0.907 9 C -0.232 4.232 10 C 0.307 3.693 11 O -0.384 6.384 12 N -0.330 5.330 13 C -0.021 4.021 14 C -0.161 4.161 15 C -0.121 4.121 16 H 0.093 0.907 17 C -0.182 4.182 18 C 0.053 3.947 19 N -0.312 5.312 20 C -0.340 4.340 21 H 0.102 0.898 22 C -0.202 4.202 23 N -0.574 5.574 24 Si 0.731 3.269 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.201 1.201 28 C 0.045 3.955 29 H 0.043 0.957 30 C -0.008 4.008 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.058 0.942 52 H 0.113 0.887 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.746 -5.930 -14.453 18.961 hybrid contribution -0.317 -0.665 0.103 0.744 sum 10.429 -6.595 -14.350 18.925 Atomic orbital electron populations 1.21739 0.93725 1.02019 1.03472 1.22442 0.95803 0.83967 0.99703 1.88007 1.20340 1.26046 1.95320 1.22470 0.82425 0.95497 1.00654 1.22595 0.97928 0.92808 0.88267 1.88165 1.80108 1.21043 1.37069 1.21862 0.98329 0.83578 0.94700 0.90667 1.22366 0.99703 1.00201 1.00948 1.20038 0.77368 0.81826 0.90090 1.90714 1.47960 1.49630 1.50076 1.47715 1.63863 1.13319 1.08113 1.21949 0.99371 0.89374 0.91432 1.21923 1.02063 0.95707 0.96375 1.22375 0.97741 0.97061 0.94966 0.90667 1.23159 0.97813 0.97637 0.99604 1.21232 0.90948 0.83576 0.98959 1.44295 0.98971 1.09280 1.78696 1.19113 0.90606 0.87918 1.36409 0.89804 1.24688 0.96450 0.97167 1.01885 1.69974 1.07318 1.26507 1.53585 0.86220 0.79162 0.82762 0.78752 1.21930 1.22046 1.20126 1.20686 0.87833 0.91913 0.95019 0.95684 1.21383 0.97309 0.99833 0.82284 0.91438 0.91959 0.91290 0.93803 0.93378 0.92287 0.92068 0.91959 0.92396 0.90387 0.90238 0.91916 0.91825 0.90050 0.89956 0.92093 0.92380 0.92756 0.94093 0.93889 0.94159 0.88662 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.06 0.62 6.66 37.16 0.25 0.87 16 3 O -0.38 -5.31 10.31 -40.09 -0.41 -5.73 16 4 C 0.07 0.76 6.32 37.16 0.23 0.99 16 5 C 0.06 0.73 6.13 37.16 0.23 0.95 16 6 O -0.35 -5.93 9.51 -59.59 -0.57 -6.49 16 7 C 0.08 1.20 2.30 -27.88 -0.06 1.13 16 8 H 0.08 0.89 7.24 -51.93 -0.38 0.51 16 9 C -0.17 -2.61 9.08 37.16 0.34 -2.27 16 10 C 0.52 10.29 7.08 -10.99 -0.08 10.22 16 11 O -0.51 -12.65 15.88 -14.14 -0.22 -12.88 16 12 N -0.59 -10.44 2.96 -173.79 -0.51 -10.96 16 13 C 0.10 1.35 5.59 -3.51 -0.02 1.33 16 14 C -0.12 -1.82 4.86 -26.51 -0.13 -1.95 16 15 C -0.10 -1.65 3.68 -88.43 -0.33 -1.97 16 16 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.14 -2.58 6.33 -24.32 -0.15 -2.73 16 18 C 0.18 4.24 4.62 -2.74 -0.01 4.23 16 19 N -0.59 -14.67 3.20 -164.42 -0.53 -15.20 16 20 C -0.21 -6.08 9.71 -15.06 -0.15 -6.23 16 21 H 0.08 2.50 6.36 -52.49 -0.33 2.17 16 22 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 23 N -0.93 -27.99 10.43 55.49 0.58 -27.42 16 24 Si 0.90 24.18 29.56 -169.99 -5.02 19.16 16 25 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 26 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 27 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 28 C 0.15 3.08 2.97 -68.30 -0.20 2.87 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 C 0.12 2.17 5.68 -4.78 -0.03 2.14 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.08 1.12 5.15 -51.93 -0.27 0.85 16 42 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.92 4.35 -51.93 -0.23 0.70 16 45 H 0.08 1.54 6.63 -51.93 -0.34 1.20 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.94 7.97 -51.93 -0.41 0.52 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.04 1.09 7.19 -51.93 -0.37 0.72 16 50 H 0.04 1.16 7.45 -51.93 -0.39 0.77 16 51 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 52 H 0.10 2.14 5.51 -51.93 -0.29 1.85 16 53 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 404.07 15.07 6.09 6.09 Total: -1.00 -36.25 404.07 -9.73 -45.99 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -9.31 Total: -0.70 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 0.18 Total: 8.13 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.46 Total: -53.57 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.20 Total: -25.10 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.02 Total: 19.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.25 -9.73 -45.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224217141.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.022 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds