Wall clock time and date at job start Sat Apr 11 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47007 * 2 1 4 4 C 1.42898 * 113.99887 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46951 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46598 * 65.00349 * 5 4 3 7 7 C 1.42902 * 113.99877 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47087 * 330.00052 * 7 6 5 9 9 C 1.53007 * 109.46897 * 89.99729 * 7 6 5 10 10 C 1.50695 * 109.47542 * 209.99892 * 7 6 5 11 11 O 1.21280 * 119.99803 * 349.82045 * 10 7 6 12 12 N 1.34776 * 120.00481 * 169.81507 * 10 7 6 13 13 C 1.47156 * 121.21185 * 4.74363 * 12 10 7 14 14 C 1.53338 * 107.71598 * 122.68586 * 13 12 10 15 15 C 1.53094 * 110.49660 * 57.57218 * 14 13 12 16 16 H 1.09001 * 113.05505 * 70.86665 * 15 14 13 17 17 C 1.56025 * 106.39339 * 195.28926 * 15 14 13 18 18 C 1.54506 * 102.61234 * 78.38449 * 17 15 14 19 19 N 1.47443 * 107.14591 * 22.84084 * 18 17 15 20 20 C 1.36936 * 126.05661 * 181.66295 * 19 18 17 21 21 H 1.08000 * 119.99616 * 174.10688 * 20 19 18 22 22 C 1.38808 * 120.00383 * 354.10215 * 20 19 18 23 23 N 1.31620 * 119.99854 * 7.09597 * 22 20 19 24 24 Si 1.86796 * 120.00333 * 187.09787 * 22 20 19 25 25 H 1.48497 * 109.47376 * 94.98268 * 24 22 20 26 26 H 1.48502 * 109.47349 * 214.98226 * 24 22 20 27 27 H 1.48502 * 109.47215 * 334.98373 * 24 22 20 28 28 C 1.46462 * 107.87784 * 1.62949 * 19 18 17 29 29 H 1.08993 * 108.42379 * 89.23495 * 28 19 18 30 30 C 1.46750 * 121.21682 * 185.01890 * 12 10 7 31 31 H 1.08998 * 109.47460 * 299.99961 * 1 2 3 32 32 H 1.09003 * 109.47288 * 59.99908 * 1 2 3 33 33 H 1.08998 * 109.47139 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.46974 * 240.00139 * 2 1 3 35 35 H 1.08999 * 109.46826 * 120.00035 * 2 1 3 36 36 H 1.08993 * 109.47299 * 299.99705 * 4 3 2 37 37 H 1.08996 * 109.46865 * 60.00344 * 4 3 2 38 38 H 1.09001 * 109.47105 * 184.99971 * 5 4 3 39 39 H 1.08999 * 109.47331 * 305.00522 * 5 4 3 40 40 H 1.08993 * 109.47012 * 56.02139 * 9 7 6 41 41 H 1.09003 * 109.46841 * 176.01544 * 9 7 6 42 42 H 1.08991 * 109.47256 * 296.01646 * 9 7 6 43 43 H 1.08997 * 109.76018 * 242.33629 * 13 12 10 44 44 H 1.09003 * 109.75817 * 3.09831 * 13 12 10 45 45 H 1.09000 * 109.39480 * 297.24971 * 14 13 12 46 46 H 1.08992 * 109.16220 * 177.75197 * 14 13 12 47 47 H 1.08996 * 110.78333 * 320.10521 * 17 15 14 48 48 H 1.08998 * 110.94224 * 196.73691 * 17 15 14 49 49 H 1.09001 * 109.90086 * 263.46428 * 18 17 15 50 50 H 1.09003 * 110.05121 * 142.30364 * 18 17 15 51 51 H 0.97007 * 120.00151 * 179.97438 * 23 22 20 52 52 H 1.09000 * 109.22904 * 352.84043 * 30 12 10 53 53 H 1.09009 * 109.22793 * 112.24273 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3974 3.5461 1.2204 7 6 3.7191 4.9347 1.3223 8 1 4.6315 5.1384 0.7619 9 6 2.5711 5.7675 0.7481 10 6 3.9274 5.2972 2.7701 11 8 3.6345 4.5061 3.6415 12 7 4.4392 6.5005 3.0967 13 6 4.7076 7.5193 2.0694 14 6 3.9188 8.7795 2.4447 15 6 4.3138 9.2627 3.8426 16 1 5.3172 9.6869 3.8800 17 6 3.2115 10.2736 4.2869 18 6 2.0560 9.3439 4.7201 19 7 2.6514 8.0371 5.0543 20 6 1.9692 6.9190 5.4539 21 1 2.4938 5.9839 5.5830 22 6 0.6036 6.9876 5.6929 23 7 -0.0609 8.0862 5.4031 24 14 -0.2911 5.5209 6.4261 25 1 -0.3837 5.6833 7.8993 26 1 -1.6575 5.4363 5.8506 27 1 0.4565 4.2770 6.1113 28 6 4.1018 8.1468 4.8825 29 1 4.5360 8.4811 5.8246 30 6 4.7548 6.8402 4.4890 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8332 0.9768 0.8908 37 1 3.8339 0.9765 -0.8892 38 1 4.9082 3.0255 -0.0892 39 1 3.3498 3.4410 -0.8424 40 1 1.6445 5.5118 1.2618 41 1 2.7847 6.8270 0.8898 42 1 2.4666 5.5572 -0.3162 43 1 5.7740 7.7432 2.0421 44 1 4.3819 7.1549 1.0951 45 1 2.8519 8.5566 2.4295 46 1 4.1323 9.5645 1.7193 47 1 2.9073 10.9055 3.4526 48 1 3.5544 10.8805 5.1249 49 1 1.3452 9.2293 3.9017 50 1 1.5520 9.7565 5.5941 51 1 -1.0153 8.1340 5.5698 52 1 4.3930 6.0468 5.1430 53 1 5.8354 6.9321 4.6001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224217141.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:50 Heat of formation + Delta-G solvation = -114.365627 kcal Electronic energy + Delta-G solvation = -32374.788185 eV Core-core repulsion = 28246.866660 eV Total energy + Delta-G solvation = -4127.921524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54919 -40.00708 -39.18190 -38.14165 -36.58161 -34.66318 -33.54205 -32.74294 -32.11909 -30.50196 -30.07070 -29.69920 -26.58000 -26.18255 -24.35911 -23.87457 -23.71852 -23.38685 -21.72621 -21.24258 -19.63939 -18.47531 -18.42382 -17.95537 -17.82309 -17.05672 -16.81048 -16.49135 -16.30128 -16.02929 -15.76883 -15.64546 -15.49403 -15.15492 -14.73661 -14.37513 -14.27662 -14.11651 -13.82079 -13.67654 -13.46150 -13.31319 -13.27794 -13.17060 -12.97147 -12.88828 -12.69914 -12.60491 -12.45964 -12.33174 -12.27573 -12.17843 -12.06100 -11.86002 -11.62166 -11.37445 -11.24894 -11.11464 -10.82074 -10.65691 -10.58694 -10.35487 -9.46609 -8.78115 -7.86025 -5.13319 1.31760 1.34074 1.46097 1.68089 1.91554 2.46975 2.74387 2.86963 3.33081 3.47820 3.65971 3.83230 3.88389 3.96455 4.00510 4.09970 4.11827 4.14756 4.23468 4.30301 4.31234 4.41308 4.45430 4.47705 4.50477 4.51855 4.57182 4.61953 4.68268 4.73470 4.74965 4.78798 4.85465 4.89707 4.92494 4.98641 5.04625 5.16502 5.18932 5.21162 5.23477 5.35110 5.57222 5.68606 5.72063 5.75940 5.83208 6.13436 6.24438 6.31573 6.60351 7.16166 7.34885 7.84693 8.46913 9.25103 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.004005 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.431105 B = 6989.656590 C = 8766.209465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.060 3.940 5 C 0.052 3.948 6 O -0.390 6.390 7 C 0.084 3.916 8 H 0.128 0.872 9 C -0.167 4.167 10 C 0.504 3.496 11 O -0.581 6.581 12 N -0.594 5.594 13 C 0.097 3.903 14 C -0.121 4.121 15 C -0.083 4.083 16 H 0.126 0.874 17 C -0.129 4.129 18 C 0.185 3.815 19 N -0.604 5.604 20 C -0.200 4.200 21 H 0.064 0.936 22 C -0.061 4.061 23 N -0.946 5.946 24 Si 0.946 3.054 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.140 3.860 29 H 0.026 0.974 30 C 0.117 3.883 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.034 0.966 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.003 0.997 50 H -0.001 1.001 51 H 0.242 0.758 52 H 0.045 0.955 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.047 -4.252 -18.486 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.334 6.334 4 C -0.016 4.016 5 C -0.024 4.024 6 O -0.309 6.309 7 C 0.023 3.977 8 H 0.145 0.855 9 C -0.224 4.224 10 C 0.292 3.708 11 O -0.460 6.460 12 N -0.327 5.327 13 C -0.023 4.023 14 C -0.159 4.159 15 C -0.102 4.102 16 H 0.144 0.856 17 C -0.167 4.167 18 C 0.060 3.940 19 N -0.329 5.329 20 C -0.329 4.329 21 H 0.082 0.918 22 C -0.254 4.254 23 N -0.597 5.597 24 Si 0.778 3.222 25 H -0.209 1.209 26 H -0.220 1.220 27 H -0.218 1.218 28 C 0.033 3.967 29 H 0.043 0.957 30 C -0.006 4.006 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.052 0.948 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.085 0.915 49 H 0.021 0.979 50 H 0.017 0.983 51 H 0.051 0.949 52 H 0.064 0.936 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.457 -4.698 -17.827 23.428 hybrid contribution -1.387 -1.066 1.148 2.092 sum 13.071 -5.763 -16.679 21.960 Atomic orbital electron populations 1.21779 0.93726 1.03286 1.02171 1.22627 0.95950 0.83073 1.00875 1.87963 1.22028 1.27883 1.95573 1.22702 0.81358 0.95771 1.01810 1.22966 1.00068 0.92666 0.86655 1.88138 1.81052 1.21828 1.39909 1.21900 1.00416 0.83338 0.92012 0.85468 1.22325 0.97136 1.00621 1.02330 1.21047 0.76241 0.81849 0.91644 1.90675 1.51002 1.51956 1.52325 1.47912 1.62572 1.13684 1.08529 1.22357 1.01903 0.87143 0.90939 1.21917 0.99393 0.97924 0.96711 1.22440 0.99446 0.94203 0.94132 0.85604 1.23023 0.95754 0.96996 1.00962 1.20994 0.92855 0.84372 0.95792 1.44463 1.01594 1.08532 1.78292 1.19083 0.90709 0.88575 1.34579 0.91812 1.25237 0.97404 0.99072 1.03686 1.70140 1.06862 1.27505 1.55169 0.85501 0.78004 0.80068 0.78672 1.20906 1.21964 1.21804 1.21039 0.84614 0.94279 0.96740 0.95700 1.21255 0.99366 0.97302 0.82725 0.94091 0.91830 0.88772 0.90940 0.93736 0.93643 0.88186 0.88572 0.91008 0.95575 0.89285 0.88414 0.87184 0.87707 0.94752 0.87543 0.89841 0.91478 0.97873 0.98290 0.94877 0.93622 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 10.28 71.98 0.74 -2.37 16 2 C 0.05 1.08 6.66 71.98 0.48 1.55 16 3 O -0.41 -11.62 10.31 -144.34 -1.49 -13.10 16 4 C 0.06 1.28 6.32 71.98 0.45 1.74 16 5 C 0.05 1.12 6.13 71.98 0.44 1.56 16 6 O -0.39 -13.30 9.51 -125.69 -1.19 -14.50 16 7 C 0.08 2.49 2.30 29.85 0.07 2.56 16 8 H 0.13 2.38 7.24 -2.39 -0.02 2.37 16 9 C -0.17 -4.80 9.08 71.98 0.65 -4.15 16 10 C 0.50 20.09 7.08 87.66 0.62 20.71 16 11 O -0.58 -30.64 15.88 15.81 0.25 -30.39 16 12 N -0.59 -19.85 2.96 -822.12 -2.43 -22.28 16 13 C 0.10 2.09 5.59 86.37 0.48 2.57 16 14 C -0.12 -3.08 4.86 30.74 0.15 -2.93 16 15 C -0.08 -2.33 3.68 -9.38 -0.03 -2.36 16 16 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 17 C -0.13 -4.31 6.33 32.15 0.20 -4.11 16 18 C 0.18 9.11 4.62 86.71 0.40 9.51 16 19 N -0.60 -31.23 3.20 -674.09 -2.15 -33.38 16 20 C -0.20 -12.12 9.71 84.03 0.82 -11.31 16 21 H 0.06 4.10 6.36 -2.91 -0.02 4.09 16 22 C -0.06 -3.85 5.48 84.86 0.47 -3.38 16 23 N -0.95 -60.55 10.43 21.65 0.23 -60.33 16 24 Si 0.95 52.80 29.56 68.60 2.03 54.82 16 25 H -0.28 -15.11 7.11 99.48 0.71 -14.41 16 26 H -0.29 -16.15 7.11 99.48 0.71 -15.44 16 27 H -0.29 -16.86 7.11 99.48 0.71 -16.15 16 28 C 0.14 5.44 2.97 44.77 0.13 5.57 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 C 0.12 4.31 5.68 85.77 0.49 4.80 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.37 8.08 -2.39 -0.02 1.35 16 39 H 0.07 1.32 7.96 -2.39 -0.02 1.30 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 2.34 5.15 -2.39 -0.01 2.32 16 42 H 0.10 2.09 7.96 -2.39 -0.02 2.07 16 43 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.10 1.79 4.35 -2.39 -0.01 1.78 16 45 H 0.03 1.22 6.63 -2.39 -0.02 1.21 16 46 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.08 2.40 7.97 -2.39 -0.02 2.38 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.00 0.17 7.19 -2.39 -0.02 0.15 16 50 H 0.00 -0.07 7.45 -2.39 -0.02 -0.08 16 51 H 0.24 15.20 8.31 -92.70 -0.77 14.43 16 52 H 0.05 2.15 5.51 -2.39 -0.01 2.13 16 53 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 Total: -1.00 -91.89 404.07 2.67 -89.22 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.88 Total: 9.94 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.56 Total: 19.99 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -4.36 Total: -115.99 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -2.43 Total: -57.99 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.03 Total: 54.82 kcal Total: -91.89 2.67 -89.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224217141.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.145 kcal (2) G-P(sol) polarization free energy of solvation -91.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds