Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47193 * 2 1 4 4 C 1.42898 * 114.00407 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46784 * 29.99477 * 4 3 2 6 6 C 1.50704 * 109.46960 * 269.99914 * 4 3 2 7 7 O 1.21276 * 119.99992 * 352.29700 * 6 4 3 8 8 N 1.34775 * 119.99768 * 172.30105 * 6 4 3 9 9 C 1.46494 * 119.99966 * 184.78924 * 8 6 4 10 10 C 1.53038 * 109.46313 * 275.06848 * 9 8 6 11 11 C 1.53191 * 109.31353 * 178.60906 * 10 9 8 12 12 N 1.46929 * 108.77446 * 54.64336 * 11 10 9 13 13 C 1.36928 * 120.63663 * 126.41057 * 12 11 10 14 14 H 1.08002 * 119.99785 * 327.42300 * 13 12 11 15 15 C 1.38814 * 120.00097 * 147.42462 * 13 12 11 16 16 N 1.31619 * 119.99769 * 167.36065 * 15 13 12 17 17 Si 1.86800 * 120.00138 * 347.36086 * 15 13 12 18 18 H 1.48496 * 109.46838 * 86.04288 * 17 15 13 19 19 H 1.48497 * 109.46903 * 206.04520 * 17 15 13 20 20 H 1.48500 * 109.46819 * 326.04399 * 17 15 13 21 21 C 1.46928 * 118.73231 * 306.38703 * 12 11 10 22 22 C 1.53035 * 109.46285 * 154.99836 * 9 8 6 23 23 C 1.52999 * 109.47370 * 149.99556 * 4 3 2 24 24 C 1.53172 * 109.61812 * 297.21105 * 23 4 3 25 25 C 1.53088 * 109.16653 * 176.89069 * 24 23 4 26 26 O 1.42903 * 109.41621 * 302.39258 * 25 24 23 27 27 C 1.42910 * 114.09693 * 61.15496 * 26 25 24 28 28 C 1.53089 * 109.41329 * 298.84653 * 27 26 25 29 29 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47084 * 300.00376 * 1 2 3 31 31 H 1.09007 * 109.46583 * 60.00270 * 1 2 3 32 32 H 1.08991 * 109.47596 * 239.99677 * 2 1 3 33 33 H 1.09006 * 109.46564 * 119.99182 * 2 1 3 34 34 H 0.97005 * 120.00017 * 4.79478 * 8 6 4 35 35 H 1.09003 * 109.45955 * 35.02824 * 9 8 6 36 36 H 1.08991 * 109.49837 * 298.56803 * 10 9 8 37 37 H 1.09000 * 109.49699 * 58.66381 * 10 9 8 38 38 H 1.08994 * 109.59440 * 294.85062 * 11 10 9 39 39 H 1.09010 * 109.70323 * 174.48994 * 11 10 9 40 40 H 0.97004 * 119.99909 * 180.02562 * 16 15 13 41 41 H 1.09009 * 109.58914 * 293.82017 * 21 12 11 42 42 H 1.09001 * 109.70281 * 173.47288 * 21 12 11 43 43 H 1.08998 * 109.50196 * 301.33968 * 22 9 8 44 44 H 1.08999 * 109.49545 * 61.43501 * 22 9 8 45 45 H 1.09006 * 109.54237 * 176.99022 * 23 4 3 46 46 H 1.09001 * 109.52180 * 296.80102 * 24 23 4 47 47 H 1.09003 * 109.52429 * 56.98311 * 24 23 4 48 48 H 1.09003 * 109.48352 * 182.40770 * 25 24 23 49 49 H 1.09010 * 109.47736 * 62.37588 * 25 24 23 50 50 H 1.08995 * 109.47919 * 178.86272 * 27 26 25 51 51 H 1.09001 * 109.47651 * 58.82275 * 27 26 25 52 52 H 1.09006 * 109.52098 * 297.69709 * 28 27 26 53 53 H 1.09000 * 109.52315 * 177.51988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8636 0.6015 -0.5129 6 6 3.9311 1.5001 1.4217 7 8 3.1428 1.5790 2.3399 8 7 5.2543 1.4482 1.6720 9 6 5.7363 1.3810 3.0537 10 6 5.8299 2.7955 3.6304 11 6 6.3009 2.7190 5.0861 12 7 7.5594 1.9623 5.1368 13 6 8.6689 2.4929 5.7388 14 1 8.8404 3.5589 5.7113 15 6 9.5731 1.6608 6.3844 16 7 10.7519 2.1229 6.7439 17 14 9.1170 -0.1148 6.7431 18 1 9.4372 -0.9562 5.5622 19 1 9.8876 -0.5962 7.9176 20 1 7.6636 -0.2032 7.0345 21 6 7.6044 0.6251 4.5297 22 6 7.1187 0.7250 3.0803 23 6 3.8410 2.7456 -0.7208 24 6 3.3949 2.6786 -2.1846 25 6 3.7407 3.9997 -2.8764 26 8 3.1098 5.0783 -2.1831 27 6 3.5241 5.2192 -0.8226 28 6 3.1696 3.9470 -0.0484 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 5.8876 1.4553 0.9372 35 1 5.0425 0.7904 3.6520 36 1 6.5422 3.3795 3.0477 37 1 4.8498 3.2706 3.5898 38 1 5.5461 2.2136 5.6884 39 1 6.4638 3.7250 5.4731 40 1 11.3840 1.5414 7.1947 41 1 6.9558 -0.0512 5.0866 42 1 8.6269 0.2478 4.5473 43 1 7.0559 -0.2736 2.6480 44 1 7.8189 1.3285 2.5027 45 1 4.9240 2.8601 -0.6745 46 1 3.9107 1.8592 -2.6854 47 1 2.3183 2.5144 -2.2302 48 1 3.3871 3.9738 -3.9071 49 1 4.8212 4.1435 -2.8661 50 1 3.0143 6.0718 -0.3739 51 1 4.6017 5.3789 -0.7855 52 1 2.0884 3.8085 -0.0507 53 1 3.5241 4.0349 0.9786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228493559.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = -140.973600 kcal Electronic energy + Delta-G solvation = -31763.003040 eV Core-core repulsion = 27633.927708 eV Total energy + Delta-G solvation = -4129.075333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61405 -40.18397 -39.34613 -38.34074 -36.07315 -35.32901 -34.04363 -32.12300 -32.02447 -31.99125 -31.83070 -28.94983 -26.73455 -24.88783 -24.53223 -24.41458 -23.73436 -23.37046 -21.58488 -21.22199 -20.89541 -19.08037 -18.29818 -18.05327 -17.41192 -17.31409 -16.87119 -16.57260 -16.25988 -15.97157 -15.86384 -15.65869 -15.49682 -15.38895 -15.16645 -14.71908 -14.69148 -14.50761 -14.31211 -14.10670 -13.85258 -13.52350 -13.30273 -13.21690 -12.95256 -12.84861 -12.64507 -12.57608 -12.27386 -12.25624 -12.17547 -12.06414 -12.00933 -11.82992 -11.71690 -11.58627 -11.40113 -11.28772 -11.17963 -10.75711 -10.53922 -10.17933 -10.06107 -8.90721 -8.17281 -5.58466 1.26970 1.41136 1.49637 1.55830 2.01337 2.39403 2.67916 3.00114 3.09776 3.25848 3.52032 3.58273 3.72630 3.79955 3.95005 3.96416 4.04777 4.13128 4.18794 4.20050 4.29134 4.29675 4.36325 4.44621 4.46302 4.46433 4.59798 4.60157 4.67312 4.70319 4.73708 4.81556 4.82565 4.84887 4.90144 4.92435 5.00339 5.01876 5.04816 5.13982 5.14514 5.19609 5.24308 5.37555 5.42355 5.49178 5.88658 6.06749 6.12566 6.30234 6.59026 6.89732 7.25118 7.57782 8.00318 9.02654 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.002843 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.081667 B = 9847.762797 C =10916.281547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.369 6.369 4 C 0.086 3.914 5 H 0.118 0.882 6 C 0.488 3.512 7 O -0.569 6.569 8 N -0.709 5.709 9 C 0.162 3.838 10 C -0.126 4.126 11 C 0.147 3.853 12 N -0.620 5.620 13 C -0.250 4.250 14 H 0.050 0.950 15 C -0.033 4.033 16 N -0.961 5.961 17 Si 0.955 3.045 18 H -0.261 1.261 19 H -0.313 1.313 20 H -0.268 1.268 21 C 0.116 3.884 22 C -0.126 4.126 23 C -0.077 4.077 24 C -0.140 4.140 25 C 0.054 3.946 26 O -0.405 6.405 27 C 0.063 3.937 28 C -0.143 4.143 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.414 0.586 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.056 0.944 40 H 0.263 0.737 41 H 0.029 0.971 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.063 0.937 50 H 0.093 0.907 51 H 0.061 0.939 52 H 0.061 0.939 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.602 -4.303 -24.310 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.287 6.287 4 C 0.024 3.976 5 H 0.135 0.865 6 C 0.275 3.725 7 O -0.448 6.448 8 N -0.363 5.363 9 C 0.057 3.943 10 C -0.166 4.166 11 C 0.022 3.978 12 N -0.345 5.345 13 C -0.380 4.380 14 H 0.067 0.933 15 C -0.228 4.228 16 N -0.607 5.607 17 Si 0.783 3.217 18 H -0.187 1.187 19 H -0.242 1.242 20 H -0.193 1.193 21 C -0.010 4.010 22 C -0.165 4.165 23 C -0.096 4.096 24 C -0.178 4.178 25 C -0.022 4.022 26 O -0.324 6.324 27 C -0.013 4.013 28 C -0.181 4.181 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.251 0.749 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.087 0.913 48 H 0.126 0.874 49 H 0.082 0.918 50 H 0.111 0.889 51 H 0.080 0.920 52 H 0.080 0.920 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.326 -4.014 -23.679 29.614 hybrid contribution 0.778 -0.859 1.071 1.578 sum -16.548 -4.873 -22.608 28.438 Atomic orbital electron populations 1.21717 0.92929 1.03245 1.02477 1.22729 0.96574 0.82964 1.00395 1.88003 1.18761 1.27673 1.94219 1.22150 0.83471 1.01508 0.90475 0.86490 1.21930 0.82368 0.75268 0.92932 1.90706 1.56361 1.49847 1.47847 1.46073 1.06966 1.74481 1.08744 1.20633 0.95041 0.96060 0.82598 1.22164 1.00364 0.97080 0.96987 1.20995 0.86362 0.95735 0.94742 1.44460 1.08211 1.16504 1.65310 1.18830 0.98715 0.93057 1.27400 0.93261 1.26060 0.96268 1.02557 0.97882 1.69903 1.07497 1.38050 1.45258 0.85864 0.77838 0.81110 0.76841 1.18678 1.24170 1.19298 1.21475 0.99569 0.86810 0.93100 1.22149 0.95176 1.01781 0.97429 1.21362 1.01106 0.91452 0.95674 1.22167 1.02921 0.99327 0.93346 1.22791 0.97708 0.85236 0.96483 1.87914 1.68111 1.52087 1.24269 1.22589 0.99865 0.97190 0.81695 1.22058 1.01582 0.95560 0.98865 0.89218 0.93614 0.91343 0.90666 0.94827 0.74905 0.91863 0.91643 0.92146 0.95755 0.92542 0.92832 0.95262 0.91986 0.89003 0.90545 0.87645 0.88057 0.91323 0.87440 0.91839 0.88879 0.92050 0.91973 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.84 6.46 71.98 0.46 1.30 16 3 O -0.37 -7.80 8.09 -130.06 -1.05 -8.85 16 4 C 0.09 1.46 2.23 29.85 0.07 1.53 16 5 H 0.12 1.23 7.79 -2.39 -0.02 1.21 16 6 C 0.49 11.91 6.02 87.66 0.53 12.44 16 7 O -0.57 -19.67 16.18 15.91 0.26 -19.42 16 8 N -0.71 -15.21 5.07 -442.43 -2.24 -17.45 16 9 C 0.16 4.68 2.38 45.02 0.11 4.78 16 10 C -0.13 -4.12 5.65 30.67 0.17 -3.95 16 11 C 0.15 5.92 6.52 86.36 0.56 6.49 16 12 N -0.62 -28.86 2.73 -699.08 -1.91 -30.77 16 13 C -0.25 -14.14 10.05 84.04 0.84 -13.29 16 14 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 15 C -0.03 -1.91 5.34 84.86 0.45 -1.46 16 16 N -0.96 -60.05 13.97 21.65 0.30 -59.75 16 17 Si 0.95 46.09 24.25 68.60 1.66 47.75 16 18 H -0.26 -11.40 6.42 99.48 0.64 -10.76 16 19 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 20 H -0.27 -12.67 6.61 99.48 0.66 -12.01 16 21 C 0.12 4.64 4.15 86.36 0.36 5.00 16 22 C -0.13 -3.68 5.55 30.67 0.17 -3.51 16 23 C -0.08 -1.11 2.11 -10.68 -0.02 -1.13 16 24 C -0.14 -1.56 5.34 30.68 0.16 -1.39 16 25 C 0.05 0.65 6.84 72.01 0.49 1.14 16 26 O -0.40 -7.69 10.77 -148.98 -1.60 -9.29 16 27 C 0.06 1.12 6.84 72.01 0.49 1.61 16 28 C -0.14 -2.84 5.02 30.68 0.15 -2.69 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.41 5.96 8.40 -92.70 -0.78 5.18 16 35 H 0.06 2.11 7.65 -2.39 -0.02 2.10 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 2.33 7.93 -2.38 -0.02 2.31 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.03 1.17 6.93 -2.38 -0.02 1.16 16 42 H 0.06 2.70 4.48 -2.39 -0.01 2.68 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.11 1.14 7.94 -2.38 -0.02 1.12 16 46 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 48 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 50 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 1.51 7.52 -2.38 -0.02 1.49 16 53 H 0.05 1.29 7.44 -2.39 -0.02 1.28 16 Total: -1.00 -75.59 404.15 1.15 -74.44 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.02 Total: 17.94 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.75 Total: 5.40 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.85 Total: -107.97 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -2.40 Total: -37.57 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.66 Total: 47.75 kcal Total: -75.59 1.15 -74.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228493559.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.532 kcal (2) G-P(sol) polarization free energy of solvation -75.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds