Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47164 * 2 1 4 4 C 1.42899 * 114.00067 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.91434 * 26.10415 * 4 3 2 6 6 C 1.55119 * 111.16678 * 262.17305 * 4 3 2 7 7 N 1.47426 * 104.94435 * 205.13566 * 6 4 3 8 8 C 1.34769 * 125.64589 * 204.04197 * 7 6 4 9 9 O 1.21285 * 119.99735 * 179.97438 * 8 7 6 10 10 C 1.50701 * 120.00233 * 359.95313 * 8 7 6 11 11 C 1.53003 * 109.47166 * 174.47110 * 10 8 7 12 12 C 1.53001 * 109.47014 * 180.65422 * 11 10 8 13 13 O 1.42901 * 109.46978 * 300.65579 * 11 10 8 14 14 C 1.52999 * 109.47327 * 60.65512 * 11 10 8 15 15 C 1.52997 * 117.50186 * 248.74857 * 14 11 10 16 16 C 1.53000 * 117.50055 * 180.08485 * 14 11 10 17 17 C 1.47021 * 108.70565 * 24.00127 * 7 6 4 18 18 C 1.54329 * 107.26926 * 358.94187 * 17 7 6 19 19 H 1.08998 * 110.71956 * 96.34685 * 18 17 7 20 20 C 1.52999 * 110.72174 * 219.44505 * 18 17 7 21 21 N 1.46500 * 109.46839 * 291.15944 * 20 18 17 22 22 C 1.36940 * 119.99901 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99795 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00107 * 179.97438 * 22 21 20 25 25 N 1.31623 * 119.99813 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00050 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.47187 * 269.99927 * 26 24 22 28 28 H 1.48502 * 109.47225 * 29.99845 * 26 24 22 29 29 H 1.48496 * 109.47343 * 149.99953 * 26 24 22 30 30 H 1.08997 * 109.47395 * 60.00345 * 1 2 3 31 31 H 1.09000 * 109.46541 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47036 * 299.99591 * 1 2 3 33 33 H 1.09004 * 109.46858 * 240.00396 * 2 1 3 34 34 H 1.08999 * 109.47188 * 120.00401 * 2 1 3 35 35 H 1.09001 * 110.42249 * 86.20230 * 6 4 3 36 36 H 1.09006 * 110.20465 * 323.95354 * 6 4 3 37 37 H 1.09002 * 109.46871 * 294.46356 * 10 8 7 38 38 H 1.08994 * 109.47128 * 54.47058 * 10 8 7 39 39 H 1.08998 * 109.47003 * 64.80076 * 12 11 10 40 40 H 1.09000 * 109.46685 * 184.79559 * 12 11 10 41 41 H 1.09000 * 109.47377 * 304.79589 * 12 11 10 42 42 H 0.96694 * 114.00085 * 60.00301 * 13 11 10 43 43 H 1.09004 * 115.55008 * 34.41815 * 14 11 10 44 44 H 1.09007 * 117.49818 * 359.97438 * 15 14 11 45 45 H 1.08999 * 117.50379 * 145.01984 * 15 14 11 46 46 H 1.08993 * 117.50195 * 214.97859 * 16 14 11 47 47 H 1.09003 * 117.49729 * 0.02562 * 16 14 11 48 48 H 1.08997 * 109.88143 * 239.53124 * 17 7 6 49 49 H 1.08991 * 109.88500 * 118.35801 * 17 7 6 50 50 H 1.08997 * 109.47317 * 171.15737 * 20 18 17 51 51 H 1.08994 * 109.47132 * 51.15606 * 20 18 17 52 52 H 0.97005 * 120.00490 * 359.97438 * 21 20 18 53 53 H 0.97001 * 119.99491 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8911 0.5793 -0.4471 6 6 3.9731 1.7009 1.4338 7 7 5.2626 2.3891 1.2418 8 6 6.2865 2.3976 2.1181 9 8 7.3057 2.9997 1.8541 10 6 6.1648 1.6594 3.4263 11 6 7.5021 1.7118 4.1678 12 6 7.3833 0.9485 5.4885 13 8 8.5180 1.1126 3.3609 14 6 7.8707 3.1692 4.4526 15 6 9.0657 3.7560 3.6987 16 6 9.1844 3.4345 5.1906 17 6 5.2471 3.0638 -0.0643 18 6 3.8865 2.7545 -0.7237 19 1 3.1791 3.5647 -0.5467 20 6 4.0561 2.5044 -2.2235 21 7 4.4266 3.7562 -2.8884 22 6 4.6327 3.7776 -4.2420 23 1 4.5224 2.8715 -4.8194 24 6 4.9832 4.9638 -4.8721 25 7 5.1171 6.0681 -4.1685 26 14 5.2650 4.9927 -6.7184 27 1 6.6939 4.7076 -7.0057 28 1 4.4147 3.9613 -7.3652 29 1 4.9106 6.3323 -7.2523 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.1225 0.7517 1.9484 36 1 3.2854 2.3335 1.9952 37 1 5.3924 2.1270 4.0369 38 1 5.8966 0.6207 3.2338 39 1 7.2051 -0.1071 5.2832 40 1 8.3079 1.0573 6.0554 41 1 6.5524 1.3514 6.0676 42 1 8.6483 1.5461 2.5065 43 1 7.0325 3.8337 4.6625 44 1 9.5897 3.1037 3.0001 45 1 9.0140 4.8066 3.4129 46 1 9.2106 4.2737 5.8856 47 1 9.7863 2.5707 5.4729 48 1 6.0561 2.6832 -0.6878 49 1 5.3565 4.1395 0.0728 50 1 3.1180 2.1363 -2.6389 51 1 4.8393 1.7633 -2.3820 52 1 4.5253 4.5701 -2.3699 53 1 5.3617 6.8970 -4.6089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263965576.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -114.701313 kcal Electronic energy + Delta-G solvation = -31123.253204 eV Core-core repulsion = 26995.317123 eV Total energy + Delta-G solvation = -4127.936081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.65559 -40.38400 -38.92288 -37.65297 -36.43457 -35.91383 -34.07047 -33.13170 -32.39723 -31.26443 -29.49232 -29.16215 -26.93149 -25.20958 -24.14332 -23.84594 -23.20179 -23.01501 -21.61581 -20.94722 -20.30450 -19.21108 -18.45288 -18.07319 -17.66213 -17.20565 -16.77841 -16.67551 -16.46690 -16.09850 -15.83098 -15.41348 -15.26156 -15.07848 -14.89568 -14.40867 -14.27848 -13.96331 -13.89185 -13.69220 -13.35906 -13.28583 -13.19808 -13.11228 -13.03267 -12.90396 -12.81542 -12.71151 -12.42877 -12.22941 -12.21713 -12.19578 -11.99179 -11.94790 -11.75392 -11.62200 -11.36290 -11.24471 -10.97854 -10.79715 -10.57942 -10.42763 -9.72920 -9.03899 -7.96988 -5.26717 1.45602 1.47842 1.56123 1.58044 1.81088 2.52995 2.66877 2.93621 3.26935 3.30106 3.37104 3.41763 3.64432 3.76599 3.78841 3.84255 4.02858 4.09725 4.15729 4.18958 4.26554 4.29791 4.36602 4.41767 4.46148 4.52298 4.54766 4.59048 4.67092 4.72988 4.76077 4.76596 4.81936 4.83371 4.91499 4.94903 4.99621 5.04509 5.11663 5.12535 5.15471 5.23603 5.30615 5.31022 5.35763 5.38138 5.46839 6.24244 6.28679 6.44554 6.69017 7.12214 7.30845 8.04635 8.28050 9.26507 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.003154 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.449915 B = 8876.789568 C =11639.933523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.386 6.386 4 C 0.094 3.906 5 H 0.092 0.908 6 C 0.086 3.914 7 N -0.613 5.613 8 C 0.519 3.481 9 O -0.564 6.564 10 C -0.153 4.153 11 C 0.170 3.830 12 C -0.132 4.132 13 O -0.576 6.576 14 C -0.171 4.171 15 C -0.161 4.161 16 C -0.167 4.167 17 C 0.129 3.871 18 C -0.094 4.094 19 H 0.082 0.918 20 C 0.168 3.832 21 N -0.745 5.745 22 C -0.246 4.246 23 H 0.077 0.923 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.974 3.026 27 H -0.288 1.288 28 H -0.267 1.267 29 H -0.295 1.295 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.380 0.620 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.026 0.974 51 H 0.023 0.977 52 H 0.373 0.627 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 -15.905 22.813 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.304 6.304 4 C 0.035 3.965 5 H 0.109 0.891 6 C -0.036 4.036 7 N -0.348 5.348 8 C 0.310 3.690 9 O -0.444 6.444 10 C -0.193 4.193 11 C 0.129 3.871 12 C -0.189 4.189 13 O -0.386 6.386 14 C -0.190 4.190 15 C -0.198 4.198 16 C -0.204 4.204 17 C 0.006 3.994 18 C -0.114 4.114 19 H 0.100 0.900 20 C 0.042 3.958 21 N -0.387 5.387 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.268 4.268 25 N -0.620 5.620 26 Si 0.803 3.197 27 H -0.215 1.215 28 H -0.192 1.192 29 H -0.221 1.221 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.232 0.768 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.044 0.956 51 H 0.041 0.959 52 H 0.205 0.795 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.417 -15.922 23.063 28.233 hybrid contribution 0.411 1.375 -1.957 2.427 sum -3.006 -14.547 21.106 25.809 Atomic orbital electron populations 1.21767 0.93082 1.03364 1.02554 1.22813 0.96256 0.82515 1.01376 1.87957 1.19231 1.28490 1.94761 1.23091 0.82032 0.97104 0.94274 0.89053 1.22914 0.83984 0.99127 0.97603 1.48499 1.16276 1.51942 1.18061 1.21071 0.81502 0.80594 0.85835 1.90700 1.29959 1.45756 1.77978 1.22503 1.01183 1.03031 0.92543 1.20609 0.85007 0.90161 0.91304 1.21754 1.03577 1.00316 0.93236 1.86402 1.58600 1.59725 1.33919 1.22909 0.92871 0.97563 1.05627 1.22588 1.02308 1.00314 0.94639 1.23033 0.99584 1.03305 0.94469 1.21638 0.97069 0.96772 0.83940 1.22352 0.95399 0.99023 0.94582 0.89974 1.20714 0.96908 0.88470 0.89756 1.42551 1.83721 1.07291 1.05176 1.19624 1.37998 0.94836 0.85356 0.90523 1.25598 1.03209 0.95441 1.02525 1.69828 1.56202 0.99713 1.36239 0.85128 0.77791 0.76717 0.80049 1.21480 1.19187 1.22133 0.93298 0.88976 0.91739 0.93077 0.90825 0.86680 0.89354 0.85302 0.86043 0.91115 0.91856 0.88789 0.76817 0.87952 0.89961 0.90770 0.88099 0.88604 0.92857 0.93395 0.95576 0.95922 0.79480 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.73 6.49 71.98 0.47 1.20 16 3 O -0.39 -8.84 10.16 -148.98 -1.51 -10.36 16 4 C 0.09 2.14 3.00 32.06 0.10 2.24 16 5 H 0.09 1.89 7.74 -2.39 -0.02 1.87 16 6 C 0.09 1.53 6.44 86.93 0.56 2.09 16 7 N -0.61 -15.33 3.33 -811.37 -2.70 -18.02 16 8 C 0.52 12.97 7.34 87.66 0.64 13.61 16 9 O -0.56 -18.32 11.70 13.17 0.15 -18.17 16 10 C -0.15 -2.39 4.07 29.85 0.12 -2.26 16 11 C 0.17 3.12 0.92 -10.79 -0.01 3.11 16 12 C -0.13 -1.67 8.75 71.98 0.63 -1.04 16 13 O -0.58 -13.94 12.10 -132.77 -1.61 -15.55 16 14 C -0.17 -3.54 4.03 -10.79 -0.04 -3.59 16 15 C -0.16 -4.07 7.93 30.62 0.24 -3.82 16 16 C -0.17 -3.24 9.62 30.62 0.29 -2.94 16 17 C 0.13 4.30 6.27 86.73 0.54 4.84 16 18 C -0.09 -3.01 2.71 -9.60 -0.03 -3.04 16 19 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 20 C 0.17 6.73 5.59 86.38 0.48 7.21 16 21 N -0.74 -38.65 5.48 -343.46 -1.88 -40.53 16 22 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 24 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 25 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 26 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.81 8.12 -2.38 -0.02 0.79 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 1.20 7.31 -2.39 -0.02 1.19 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.38 7.59 -2.39 -0.02 1.36 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.87 7.14 -2.39 -0.02 0.85 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.38 10.30 5.33 -74.06 -0.39 9.91 16 43 H 0.10 2.05 8.11 -2.38 -0.02 2.03 16 44 H 0.08 2.30 6.29 -2.38 -0.01 2.29 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.10 1.81 7.59 -2.39 -0.02 1.79 16 48 H 0.05 2.03 7.73 -2.39 -0.02 2.01 16 49 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 52 H 0.37 20.76 7.60 -92.70 -0.70 20.06 16 53 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -72.93 416.16 0.61 -72.32 By element: Atomic # 1 Polarization: 42.93 SS G_CDS: -0.20 Total: 42.73 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.05 Total: -0.94 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -4.30 Total: -119.06 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.97 Total: -44.07 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -72.93 0.61 -72.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263965576.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.382 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds