Wall clock time and date at job start Sat Apr 11 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47512 * 2 1 4 4 C 1.42898 * 114.00166 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.79891 * 26.70671 * 4 3 2 6 6 C 1.54943 * 110.73930 * 263.41882 * 4 3 2 7 7 N 1.48391 * 103.37303 * 204.38735 * 6 4 3 8 8 C 1.34778 * 127.17020 * 219.23990 * 7 6 4 9 9 O 1.21282 * 120.00036 * 179.79493 * 8 7 6 10 10 C 1.50701 * 119.99878 * 359.79084 * 8 7 6 11 11 C 1.53000 * 109.47013 * 174.24459 * 10 8 7 12 12 O 1.42907 * 112.84903 * 299.51466 * 11 10 8 13 13 C 1.42902 * 113.99437 * 296.51217 * 12 11 10 14 14 C 1.53783 * 113.61670 * 168.31500 * 11 10 8 15 15 C 1.53954 * 87.02087 * 220.04620 * 14 11 10 16 16 C 1.53785 * 113.61497 * 70.70707 * 11 10 8 17 17 C 1.47487 * 105.79382 * 39.06747 * 7 6 4 18 18 C 1.54005 * 107.24668 * 334.78088 * 17 7 6 19 19 H 1.09007 * 110.32383 * 120.10078 * 18 17 7 20 20 C 1.52996 * 110.32527 * 242.31668 * 18 17 7 21 21 N 1.46500 * 109.47264 * 293.54519 * 20 18 17 22 22 C 1.36939 * 120.00051 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99544 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99704 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00457 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99613 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47087 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46753 * 120.00052 * 26 24 22 29 29 H 1.48496 * 109.47441 * 240.00249 * 26 24 22 30 30 H 1.09003 * 109.47072 * 300.00391 * 1 2 3 31 31 H 1.09001 * 109.46728 * 59.99381 * 1 2 3 32 32 H 1.08997 * 109.47551 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47072 * 239.99609 * 2 1 3 34 34 H 1.08997 * 109.46851 * 120.00145 * 2 1 3 35 35 H 1.08994 * 110.66459 * 322.72720 * 6 4 3 36 36 H 1.09005 * 110.65978 * 85.84383 * 6 4 3 37 37 H 1.08994 * 109.47585 * 294.24431 * 10 8 7 38 38 H 1.09004 * 109.46899 * 54.24756 * 10 8 7 39 39 H 1.08995 * 109.47306 * 63.27103 * 13 12 11 40 40 H 1.09006 * 109.46810 * 183.27195 * 13 12 11 41 41 H 1.08997 * 109.47352 * 303.27028 * 13 12 11 42 42 H 1.09002 * 113.61396 * 334.57046 * 14 11 10 43 43 H 1.09004 * 113.61103 * 105.46630 * 14 11 10 44 44 H 1.08993 * 113.54141 * 270.81359 * 15 14 11 45 45 H 1.08998 * 113.73878 * 139.93598 * 15 14 11 46 46 H 1.08993 * 113.61279 * 254.53021 * 16 11 10 47 47 H 1.09003 * 113.61262 * 25.43341 * 16 11 10 48 48 H 1.08996 * 109.90925 * 215.32452 * 17 7 6 49 49 H 1.09001 * 109.91141 * 94.23993 * 17 7 6 50 50 H 1.08998 * 109.47204 * 53.55137 * 20 18 17 51 51 H 1.09008 * 109.46622 * 173.55050 * 20 18 17 52 52 H 0.96998 * 119.99993 * 0.02562 * 21 20 18 53 53 H 0.96996 * 120.00084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8888 0.5831 -0.4570 6 6 3.9642 1.6690 1.4403 7 7 5.2659 2.3494 1.2287 8 6 6.4119 2.1441 1.9077 9 8 7.4075 2.7748 1.6216 10 6 6.4560 1.1310 3.0224 11 6 7.8936 0.9901 3.5268 12 8 8.7970 0.5475 2.5118 13 6 8.5130 -0.7606 2.0114 14 6 8.0105 0.2018 4.8421 15 6 9.0748 1.2289 5.2695 16 6 8.3960 2.2170 4.3062 17 6 5.0486 3.2952 0.1180 18 6 3.8783 2.7514 -0.7224 19 1 3.0621 3.4736 -0.7470 20 6 4.3481 2.4300 -2.1425 21 7 4.7202 3.6710 -2.8264 22 6 5.1734 3.6317 -4.1180 23 1 5.2561 2.6857 -4.6326 24 6 5.5265 4.8075 -4.7658 25 7 5.4252 5.9603 -4.1388 26 14 6.1454 4.7537 -6.5275 27 1 6.1654 3.3468 -7.0024 28 1 5.2438 5.5552 -7.3935 29 1 7.5183 5.3163 -6.5873 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2889 2.3055 2.0119 36 1 4.1071 0.7111 1.9403 37 1 5.8150 1.4616 3.8396 38 1 6.1049 0.1678 2.6520 39 1 7.5360 -0.7606 1.5282 40 1 9.2763 -1.0462 1.2875 41 1 8.5103 -1.4727 2.8365 42 1 7.1065 0.2308 5.4504 43 1 8.4029 -0.8070 4.7130 44 1 10.0874 0.9557 4.9727 45 1 9.0053 1.5228 6.3168 46 1 9.0990 2.8326 3.7453 47 1 7.5975 2.7980 4.7678 48 1 5.9473 3.3603 -0.4952 49 1 4.7965 4.2795 0.5126 50 1 5.2118 1.7666 -2.0981 51 1 3.5421 1.9412 -2.6899 52 1 4.6456 4.5206 -2.3643 53 1 5.6723 6.7819 -4.5913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264526883.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:35 Heat of formation + Delta-G solvation = -107.136070 kcal Electronic energy + Delta-G solvation = -31265.503804 eV Core-core repulsion = 27137.895777 eV Total energy + Delta-G solvation = -4127.608027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63965 -40.65078 -39.21722 -37.70257 -36.50782 -36.40658 -33.98035 -32.48713 -31.83958 -30.63541 -29.34252 -27.99178 -27.18924 -26.37355 -25.42144 -23.98693 -23.77896 -23.08942 -21.40763 -20.50496 -20.22726 -19.24036 -18.34261 -17.94388 -17.45250 -16.99840 -16.70729 -16.52805 -16.35653 -16.11711 -15.84687 -15.59304 -15.47422 -15.18280 -15.02888 -14.80873 -14.67825 -14.35850 -14.14037 -13.89894 -13.32338 -13.26208 -13.22037 -13.14263 -13.07058 -12.85847 -12.74327 -12.50877 -12.38206 -12.29539 -12.26766 -12.15453 -11.99564 -11.91167 -11.73471 -11.67822 -11.62016 -11.11118 -11.01158 -10.87174 -10.51608 -10.31563 -9.73216 -9.05860 -7.98625 -5.28545 1.43635 1.45764 1.55420 1.64993 1.81582 2.51343 2.66532 2.81696 3.28537 3.35063 3.45843 3.54313 3.64421 3.69808 3.79894 3.93261 3.99795 4.04586 4.18594 4.26786 4.28728 4.33596 4.37970 4.40115 4.45486 4.48587 4.55452 4.56254 4.58398 4.63583 4.73986 4.76309 4.78817 4.83192 4.88618 4.89210 4.93631 4.97048 5.07136 5.09292 5.12137 5.18177 5.26451 5.27953 5.36585 5.42263 5.44725 6.22803 6.29859 6.40165 6.53500 7.19426 7.29152 8.02598 8.26540 9.25094 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008285 B = 0.003311 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.868087 B = 8455.122375 C =10871.242109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.386 6.386 4 C 0.094 3.906 5 H 0.085 0.915 6 C 0.089 3.911 7 N -0.622 5.622 8 C 0.522 3.478 9 O -0.571 6.571 10 C -0.144 4.144 11 C 0.094 3.906 12 O -0.384 6.384 13 C 0.022 3.978 14 C -0.143 4.143 15 C -0.132 4.132 16 C -0.129 4.129 17 C 0.121 3.879 18 C -0.096 4.096 19 H 0.089 0.911 20 C 0.168 3.832 21 N -0.744 5.744 22 C -0.248 4.248 23 H 0.075 0.925 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.975 3.025 27 H -0.265 1.265 28 H -0.289 1.289 29 H -0.294 1.294 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.101 0.899 48 H 0.045 0.955 49 H 0.060 0.940 50 H 0.013 0.987 51 H 0.026 0.974 52 H 0.374 0.626 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -19.895 23.396 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.305 6.305 4 C 0.035 3.965 5 H 0.103 0.897 6 C -0.033 4.033 7 N -0.358 5.358 8 C 0.313 3.687 9 O -0.449 6.449 10 C -0.183 4.183 11 C 0.054 3.946 12 O -0.303 6.303 13 C -0.074 4.074 14 C -0.180 4.180 15 C -0.169 4.169 16 C -0.167 4.167 17 C -0.002 4.002 18 C -0.116 4.116 19 H 0.107 0.893 20 C 0.041 3.959 21 N -0.387 5.387 22 C -0.379 4.379 23 H 0.093 0.907 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.804 3.196 27 H -0.189 1.189 28 H -0.216 1.216 29 H -0.222 1.222 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.061 0.939 47 H 0.119 0.881 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.031 0.969 51 H 0.044 0.956 52 H 0.206 0.794 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.565 -19.423 23.073 30.503 hybrid contribution 0.518 0.798 -1.550 1.819 sum -4.047 -18.624 21.523 28.749 Atomic orbital electron populations 1.21767 0.92999 1.03367 1.02590 1.22807 0.96299 0.82571 1.01313 1.87957 1.19257 1.28465 1.94850 1.22968 0.81911 0.96849 0.94809 0.89715 1.23161 0.83369 0.99712 0.97050 1.48929 1.11023 1.41096 1.34738 1.21040 0.80458 0.83959 0.83259 1.90759 1.34895 1.50841 1.68364 1.22298 0.99761 0.98946 0.97311 1.22487 0.87239 0.97452 0.87414 1.88029 1.52915 1.33641 1.55702 1.22881 1.01232 0.84002 0.99299 1.23547 1.00968 0.98702 0.94797 1.22777 0.98290 0.96151 0.99685 1.23006 1.00954 0.95966 0.96748 1.21777 0.97686 0.92790 0.87977 1.22209 0.96846 0.98622 0.93890 0.89290 1.20756 0.95901 0.88588 0.90656 1.42548 1.78896 1.04535 1.12682 1.19645 1.34695 0.93260 0.90335 0.90702 1.25617 1.03290 0.95083 1.02801 1.69827 1.56026 0.97626 1.38393 0.85049 0.77066 0.77812 0.79681 1.18914 1.21588 1.22167 0.91657 0.93300 0.88987 0.93289 0.90756 0.88669 0.86181 0.84449 0.86481 0.94197 0.89926 0.91312 0.86280 0.89963 0.91156 0.89302 0.93856 0.88059 0.93605 0.92132 0.96932 0.95606 0.79392 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.73 6.50 71.98 0.47 1.19 16 3 O -0.39 -8.89 10.08 -148.98 -1.50 -10.40 16 4 C 0.09 2.23 3.11 31.81 0.10 2.33 16 5 H 0.08 1.90 7.55 -2.39 -0.02 1.88 16 6 C 0.09 1.65 6.68 86.68 0.58 2.23 16 7 N -0.62 -17.32 3.30 -808.68 -2.67 -19.99 16 8 C 0.52 15.41 7.67 87.66 0.67 16.09 16 9 O -0.57 -23.47 15.27 9.86 0.15 -23.32 16 10 C -0.14 -2.50 3.92 29.85 0.12 -2.38 16 11 C 0.09 1.90 0.38 -10.27 0.00 1.90 16 12 O -0.38 -10.36 9.82 -136.09 -1.34 -11.70 16 13 C 0.02 0.41 10.55 113.37 1.20 1.61 16 14 C -0.14 -1.72 7.22 31.18 0.22 -1.49 16 15 C -0.13 -2.05 8.02 31.18 0.25 -1.80 16 16 C -0.13 -2.82 6.58 31.12 0.20 -2.61 16 17 C 0.12 4.35 6.30 86.53 0.55 4.90 16 18 C -0.10 -3.22 2.83 -9.90 -0.03 -3.25 16 19 H 0.09 3.15 8.08 -2.38 -0.02 3.13 16 20 C 0.17 7.05 5.34 86.38 0.46 7.51 16 21 N -0.74 -39.99 5.33 -343.45 -1.83 -41.82 16 22 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 23 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 24 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 25 N -0.97 -61.84 13.06 21.65 0.28 -61.56 16 26 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 27 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.12 1.24 7.09 -2.38 -0.02 1.23 16 37 H 0.14 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.12 1.42 6.50 -2.38 -0.02 1.40 16 39 H 0.04 0.71 6.94 -2.39 -0.02 0.70 16 40 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.07 0.87 6.73 -2.39 -0.02 0.86 16 42 H 0.12 0.76 8.10 -2.39 -0.02 0.74 16 43 H 0.08 0.87 6.84 -2.39 -0.02 0.86 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.10 1.85 8.10 -2.39 -0.02 1.84 16 48 H 0.05 2.08 7.48 -2.39 -0.02 2.06 16 49 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.37 21.38 7.51 -92.71 -0.70 20.68 16 53 H 0.25 15.51 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -82.27 419.61 2.14 -80.14 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.18 Total: 31.42 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 6.83 Total: 7.13 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -4.22 Total: -123.37 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -2.69 Total: -45.42 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -82.27 2.14 -80.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264526883.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.000 kcal (2) G-P(sol) polarization free energy of solvation -82.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds