Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47227 * 2 1 4 4 C 1.42898 * 114.00136 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47261 * 30.00553 * 4 3 2 6 6 C 1.50698 * 109.47195 * 269.99977 * 4 3 2 7 7 O 1.21277 * 120.00243 * 354.99794 * 6 4 3 8 8 N 1.34779 * 119.99934 * 175.00344 * 6 4 3 9 9 C 1.46500 * 120.00196 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.46967 * 325.00170 * 9 8 6 11 11 C 1.52997 * 109.47170 * 204.99986 * 9 8 6 12 12 N 1.46505 * 109.47212 * 54.99826 * 11 9 8 13 13 C 1.36936 * 119.99992 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31619 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00265 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46968 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47299 * 119.99957 * 17 15 13 20 20 H 1.48495 * 109.47075 * 240.00117 * 17 15 13 21 21 C 1.52994 * 109.46849 * 84.99779 * 9 8 6 22 22 C 1.52999 * 117.50412 * 8.74867 * 21 9 8 23 23 C 1.53002 * 117.50104 * 300.08575 * 21 9 8 24 24 C 1.53001 * 109.46706 * 149.99961 * 4 3 2 25 25 C 1.53181 * 109.54395 * 59.82504 * 24 4 3 26 26 C 1.53099 * 109.15918 * 183.23829 * 25 24 4 27 27 O 1.42907 * 109.48866 * 57.47242 * 26 25 24 28 28 C 1.42902 * 114.09946 * 298.89635 * 27 26 25 29 29 C 1.53087 * 109.41838 * 61.14828 * 28 27 26 30 30 H 1.08998 * 109.47383 * 60.00102 * 1 2 3 31 31 H 1.09005 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47146 * 299.99916 * 1 2 3 33 33 H 1.08995 * 109.47840 * 240.00245 * 2 1 3 34 34 H 1.09007 * 109.47516 * 119.99725 * 2 1 3 35 35 H 0.96998 * 119.99752 * 0.02562 * 8 6 4 36 36 H 1.09002 * 109.47153 * 294.99818 * 11 9 8 37 37 H 1.09001 * 109.46832 * 175.00009 * 11 9 8 38 38 H 0.96996 * 119.99606 * 0.02562 * 12 11 9 39 39 H 0.97001 * 120.00803 * 179.97438 * 16 15 13 40 40 H 1.09003 * 115.54830 * 154.41823 * 21 9 8 41 41 H 1.09003 * 117.49323 * 359.97438 * 22 21 9 42 42 H 1.09003 * 117.50071 * 145.01968 * 22 21 9 43 43 H 1.09000 * 117.50257 * 214.97832 * 23 21 9 44 44 H 1.09002 * 117.49965 * 359.97438 * 23 21 9 45 45 H 1.08996 * 109.54281 * 179.97438 * 24 4 3 46 46 H 1.09000 * 109.52278 * 303.05818 * 25 24 4 47 47 H 1.08997 * 109.52441 * 63.24323 * 25 24 4 48 48 H 1.08998 * 109.41095 * 297.49596 * 26 25 24 49 49 H 1.09001 * 109.48719 * 177.50329 * 26 25 24 50 50 H 1.09010 * 109.47601 * 301.17143 * 28 27 26 51 51 H 1.08995 * 109.48427 * 181.13977 * 28 27 26 52 52 H 1.08999 * 109.52623 * 182.48968 * 29 28 27 53 53 H 1.09000 * 109.52116 * 62.29989 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6017 -0.5130 6 6 3.9310 1.5000 1.4216 7 8 3.1416 1.5295 2.3418 8 7 5.2557 1.5030 1.6699 9 6 5.7420 1.5413 3.0513 10 1 5.0704 2.1504 3.6562 11 6 7.1464 2.1476 3.0810 12 7 7.1250 3.4612 2.4326 13 6 8.2757 4.1979 2.3401 14 1 9.1990 3.8103 2.7447 15 6 8.2553 5.4426 1.7263 16 7 7.1300 5.9152 1.2337 17 14 9.8251 6.4473 1.5994 18 1 10.9442 5.6981 2.2252 19 1 10.1372 6.6994 0.1697 20 1 9.6418 7.7426 2.3019 21 6 5.7882 0.1198 3.6151 22 6 5.5454 -1.0349 2.6411 23 6 4.4740 -0.6620 3.6688 24 6 3.8408 2.7457 -0.7207 25 6 3.2299 3.9532 -0.0029 26 6 3.5781 5.2271 -0.7773 27 8 3.1013 5.1144 -2.1197 28 6 3.6754 4.0311 -2.8538 29 6 3.3293 2.7089 -2.1641 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 5.8871 1.4799 0.9339 36 1 7.8366 1.4917 2.5503 37 1 7.4726 2.2580 4.1151 38 1 6.2957 3.8094 2.0696 39 1 7.1156 6.7852 0.8051 40 1 6.5041 -0.0434 4.4207 41 1 5.3525 -0.7818 1.5986 42 1 6.1014 -1.9579 2.8061 43 1 4.3256 -1.3398 4.5094 44 1 3.5765 -0.1634 3.3029 45 1 4.9272 2.8332 -0.7206 46 1 2.1467 3.8404 0.0422 47 1 3.6326 4.0182 1.0079 48 1 4.6598 5.3616 -0.7859 49 1 3.1089 6.0851 -0.2957 50 1 4.7584 4.1498 -2.8895 51 1 3.2764 4.0273 -3.8681 52 1 3.8031 1.8848 -2.6975 53 1 2.2482 2.5703 -2.1640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269099599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = -116.910095 kcal Electronic energy + Delta-G solvation = -32783.418861 eV Core-core repulsion = 28655.387001 eV Total energy + Delta-G solvation = -4128.031861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72984 -40.20933 -39.04535 -37.82930 -36.54177 -35.44470 -34.60519 -32.97082 -32.02162 -31.96638 -30.18359 -28.45532 -25.94342 -24.75690 -24.50224 -23.69080 -23.45966 -22.97009 -21.87662 -21.13532 -20.72624 -19.28808 -18.37934 -17.97829 -17.51205 -16.98607 -16.90250 -16.72658 -16.51408 -16.07079 -15.88326 -15.65553 -15.43965 -15.17706 -15.01890 -14.81325 -14.68215 -14.35222 -14.15074 -13.69705 -13.27904 -13.20975 -13.11633 -12.96173 -12.87456 -12.81785 -12.68445 -12.65510 -12.33928 -12.20724 -12.13491 -12.04283 -12.01761 -11.81851 -11.72295 -11.32044 -11.18233 -11.15921 -10.96686 -10.82129 -10.50954 -10.15679 -9.92977 -8.96431 -7.89531 -5.18492 1.48494 1.50565 1.58156 1.58858 2.09983 2.57275 2.70911 2.94498 2.99004 3.44161 3.52367 3.59718 3.66651 3.77245 3.95083 4.01206 4.06701 4.08987 4.16194 4.19247 4.22455 4.33535 4.40004 4.43398 4.45953 4.49792 4.50846 4.64531 4.65562 4.71007 4.77605 4.81548 4.84124 4.86925 4.89663 4.94956 5.04600 5.05924 5.14338 5.14907 5.17859 5.25089 5.27629 5.37305 5.42405 5.54471 5.59699 6.11198 6.29223 6.29944 6.60483 7.28419 7.38712 8.10199 8.35973 9.31967 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.004982 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.126039 B = 5618.480354 C = 8300.042842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.090 3.910 5 H 0.115 0.885 6 C 0.494 3.506 7 O -0.561 6.561 8 N -0.701 5.701 9 C 0.180 3.820 10 H 0.055 0.945 11 C 0.151 3.849 12 N -0.740 5.740 13 C -0.244 4.244 14 H 0.074 0.926 15 C -0.063 4.063 16 N -0.954 5.954 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.294 1.294 20 H -0.300 1.300 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.191 4.191 24 C -0.075 4.075 25 C -0.127 4.127 26 C 0.070 3.930 27 O -0.400 6.400 28 C 0.053 3.947 29 C -0.134 4.134 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.408 0.592 36 H 0.041 0.959 37 H 0.032 0.968 38 H 0.376 0.624 39 H 0.248 0.752 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.043 0.957 49 H 0.085 0.915 50 H 0.047 0.953 51 H 0.116 0.884 52 H 0.102 0.898 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -16.246 -6.982 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.285 6.285 4 C 0.029 3.971 5 H 0.132 0.868 6 C 0.281 3.719 7 O -0.439 6.439 8 N -0.354 5.354 9 C 0.075 3.925 10 H 0.073 0.927 11 C 0.024 3.976 12 N -0.384 5.384 13 C -0.376 4.376 14 H 0.092 0.908 15 C -0.256 4.256 16 N -0.604 5.604 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.221 1.221 20 H -0.228 1.228 21 C -0.188 4.188 22 C -0.194 4.194 23 C -0.228 4.228 24 C -0.094 4.094 25 C -0.165 4.165 26 C -0.006 4.006 27 O -0.320 6.320 28 C -0.024 4.024 29 C -0.172 4.172 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.244 0.756 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.208 0.792 39 H 0.057 0.943 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.134 0.866 52 H 0.120 0.880 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.796 -15.921 -6.370 19.273 hybrid contribution 1.208 0.950 0.250 1.557 sum -7.587 -14.971 -6.120 17.865 Atomic orbital electron populations 1.21707 0.92784 1.03287 1.02432 1.22750 0.96618 0.82859 1.00479 1.88012 1.18270 1.27911 1.94269 1.22007 0.83646 1.00581 0.90916 0.86801 1.21677 0.82373 0.75158 0.92722 1.90612 1.55999 1.50190 1.47130 1.45963 1.06792 1.73808 1.08822 1.20429 0.94807 0.94695 0.82617 0.92663 1.21005 0.93655 0.86469 0.96472 1.42475 1.08994 1.17158 1.69724 1.19557 0.89380 0.98397 1.30233 0.90767 1.25378 0.99397 0.98941 1.01889 1.69796 1.26210 1.19374 1.45031 0.85230 0.80161 0.78473 0.76767 1.19335 1.22119 1.22804 1.22614 1.01364 0.91444 1.03352 1.22958 1.02205 0.98352 0.95860 1.23259 0.93695 1.03396 1.02452 1.21259 1.00303 0.91789 0.96012 1.21883 1.01134 0.95291 0.98223 1.22391 0.98541 0.97486 0.82206 1.87856 1.67918 1.51528 1.24675 1.22793 0.97870 0.85631 0.96063 1.22126 1.02873 0.98893 0.93297 0.91545 0.88961 0.93577 0.90918 0.94379 0.75623 0.94116 0.94971 0.79171 0.94262 0.86009 0.89134 0.87134 0.88201 0.89066 0.89667 0.91481 0.93899 0.93836 0.89639 0.93456 0.86603 0.88001 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.05 1.00 6.46 71.98 0.46 1.47 16 3 O -0.37 -9.82 8.08 -129.99 -1.05 -10.87 16 4 C 0.09 2.27 2.26 29.85 0.07 2.34 16 5 H 0.11 2.08 7.79 -2.39 -0.02 2.06 16 6 C 0.49 15.40 4.78 87.66 0.42 15.82 16 7 O -0.56 -21.52 13.54 15.97 0.22 -21.30 16 8 N -0.70 -20.97 3.02 -442.55 -1.33 -22.30 16 9 C 0.18 5.89 2.59 44.99 0.12 6.00 16 10 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 11 C 0.15 5.59 5.80 86.38 0.50 6.09 16 12 N -0.74 -35.13 5.43 -343.45 -1.87 -37.00 16 13 C -0.24 -12.86 9.99 84.03 0.84 -12.02 16 14 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 15 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 16 N -0.95 -55.09 13.06 21.65 0.28 -54.81 16 17 Si 0.96 44.71 29.55 68.60 2.03 46.74 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 21 C -0.17 -4.43 5.70 -10.80 -0.06 -4.49 16 22 C -0.16 -3.43 9.74 30.62 0.30 -3.13 16 23 C -0.19 -4.93 9.82 30.62 0.30 -4.63 16 24 C -0.07 -2.02 2.13 -10.67 -0.02 -2.04 16 25 C -0.13 -4.34 5.01 30.69 0.15 -4.19 16 26 C 0.07 2.48 6.84 72.02 0.49 2.97 16 27 O -0.40 -12.90 10.77 -148.98 -1.60 -14.50 16 28 C 0.05 1.28 6.84 72.01 0.49 1.77 16 29 C -0.13 -2.90 5.32 30.68 0.16 -2.74 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.08 8.08 -2.39 -0.02 1.07 16 34 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.41 11.36 8.39 -92.71 -0.78 10.58 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.38 19.26 7.33 -92.71 -0.68 18.58 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 41 H 0.09 1.96 6.67 -2.39 -0.02 1.95 16 42 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.09 2.90 5.02 -2.39 -0.01 2.88 16 45 H 0.09 2.45 7.93 -2.39 -0.02 2.44 16 46 H 0.07 2.36 7.60 -2.39 -0.02 2.34 16 47 H 0.04 1.73 7.35 -2.39 -0.02 1.71 16 48 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 50 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 51 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 52 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.08 1.77 7.60 -2.39 -0.02 1.75 16 Total: -1.00 -66.81 415.27 1.54 -65.26 By element: Atomic # 1 Polarization: 50.92 SS G_CDS: -0.56 Total: 50.36 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.43 Total: -1.58 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -2.92 Total: -114.11 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -2.44 Total: -46.67 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.81 1.54 -65.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269099599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.647 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds