Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42899 * 109.46899 * 2 1 4 4 C 1.42896 * 114.00115 * 185.83600 * 3 2 1 5 5 H 1.09009 * 109.46990 * 14.94133 * 4 3 2 6 6 C 1.50698 * 109.47118 * 134.94182 * 4 3 2 7 7 O 1.21281 * 120.00379 * 7.23151 * 6 4 3 8 8 N 1.34781 * 119.99913 * 187.22826 * 6 4 3 9 9 C 1.46496 * 120.00264 * 184.83932 * 8 6 4 10 10 H 1.09007 * 109.46903 * 333.54215 * 9 8 6 11 11 C 1.52997 * 109.47751 * 213.53482 * 9 8 6 12 12 N 1.46508 * 109.46776 * 55.00063 * 11 9 8 13 13 C 1.36930 * 119.99951 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00123 * 0.02562 * 13 12 11 15 15 C 1.38821 * 120.00048 * 180.02562 * 13 12 11 16 16 N 1.31613 * 119.99479 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00059 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47001 * 119.99862 * 17 15 13 20 20 H 1.48498 * 109.46971 * 240.00096 * 17 15 13 21 21 C 1.53008 * 109.47059 * 93.53448 * 9 8 6 22 22 C 1.53001 * 117.49588 * 4.79384 * 21 9 8 23 23 C 1.52996 * 117.49668 * 296.13703 * 21 9 8 24 24 C 1.53001 * 109.47410 * 254.94573 * 4 3 2 25 25 C 1.53179 * 109.54434 * 65.46176 * 24 4 3 26 26 C 1.53099 * 109.15774 * 183.24025 * 25 24 4 27 27 O 1.42908 * 109.48403 * 57.47906 * 26 25 24 28 28 C 1.42897 * 114.09814 * 298.88476 * 27 26 25 29 29 C 1.53096 * 109.41316 * 61.15845 * 28 27 26 30 30 H 1.08994 * 109.47243 * 299.99977 * 1 2 3 31 31 H 1.08997 * 109.46803 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46875 * 60.00481 * 1 2 3 33 33 H 1.08997 * 109.46875 * 119.99519 * 2 1 3 34 34 H 1.08994 * 109.47243 * 240.00023 * 2 1 3 35 35 H 0.97008 * 120.00026 * 4.84740 * 8 6 4 36 36 H 1.08994 * 109.47455 * 174.99781 * 11 9 8 37 37 H 1.08994 * 109.47072 * 295.00475 * 11 9 8 38 38 H 0.97007 * 120.00053 * 0.02562 * 12 11 9 39 39 H 0.97005 * 119.99717 * 180.02562 * 16 15 13 40 40 H 1.09001 * 115.54680 * 150.46498 * 21 9 8 41 41 H 1.09002 * 117.49771 * 359.97438 * 22 21 9 42 42 H 1.09003 * 117.49695 * 145.01865 * 22 21 9 43 43 H 1.09003 * 117.49473 * 214.97356 * 23 21 9 44 44 H 1.09000 * 117.50301 * 359.97131 * 23 21 9 45 45 H 1.08996 * 109.54412 * 185.64341 * 24 4 3 46 46 H 1.08998 * 109.52545 * 303.06448 * 25 24 4 47 47 H 1.09005 * 109.52144 * 63.25102 * 25 24 4 48 48 H 1.09001 * 109.41092 * 297.49939 * 26 25 24 49 49 H 1.08998 * 109.48230 * 177.49933 * 26 25 24 50 50 H 1.09006 * 109.48436 * 301.17987 * 28 27 26 51 51 H 1.09003 * 109.48335 * 181.13727 * 28 27 26 52 52 H 1.09001 * 109.52590 * 182.48500 * 29 28 27 53 53 H 1.09002 * 109.57353 * 62.33212 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4245 1.4625 -0.1327 5 1 3.8362 0.5115 -0.4712 6 6 3.7493 2.5368 -1.1383 7 8 2.8644 3.2328 -1.5894 8 7 5.0232 2.7243 -1.5364 9 6 5.3550 3.8354 -2.4317 10 1 4.4798 4.0960 -3.0270 11 6 6.4977 3.4190 -3.3599 12 7 6.1294 2.1894 -4.0664 13 6 7.0023 1.6240 -4.9571 14 1 7.9624 2.0841 -5.1385 15 6 6.6532 0.4593 -5.6270 16 7 5.4830 -0.1011 -5.4063 17 14 7.8443 -0.3124 -6.8416 18 1 9.0817 0.5059 -6.9093 19 1 8.1835 -1.6878 -6.3962 20 1 7.2142 -0.3684 -8.1851 21 6 5.7870 5.0468 -1.6028 22 6 5.9042 4.8611 -0.0886 23 6 4.7463 5.6739 -0.6730 24 6 4.0354 1.8296 1.2211 25 6 3.8239 0.6774 2.2081 26 6 4.3659 1.0855 3.5805 27 8 3.7121 2.2796 4.0153 28 6 3.9157 3.4025 3.1554 29 6 3.3537 3.0883 1.7664 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 5.7205 2.1234 -1.2302 36 1 6.6850 4.2118 -4.0840 37 1 7.3983 3.2440 -2.7715 38 1 5.2672 1.7759 -3.9032 39 1 5.2391 -0.9152 -5.8740 40 1 6.4998 5.7160 -2.0846 41 1 5.6732 3.8761 0.3170 42 1 6.6941 5.4084 0.4258 43 1 4.7748 6.7558 -0.5427 44 1 3.7538 5.2239 -0.6521 45 1 5.1026 2.0158 1.1012 46 1 2.7594 0.4576 2.2888 47 1 4.3536 -0.2072 1.8542 48 1 5.4387 1.2645 3.5078 49 1 4.1782 0.2866 4.2978 50 1 4.9826 3.6117 3.0770 51 1 3.4037 4.2727 3.5663 52 1 3.5473 3.9264 1.0969 53 1 2.2792 2.9192 1.8369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269099601.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -119.443676 kcal Electronic energy + Delta-G solvation = -32480.802414 eV Core-core repulsion = 28352.660689 eV Total energy + Delta-G solvation = -4128.141725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74085 -40.19860 -39.04914 -38.03109 -36.55172 -35.26217 -34.67254 -33.01545 -32.22855 -31.93064 -30.19477 -28.49466 -25.98132 -24.88195 -24.54889 -23.60647 -23.46023 -22.97975 -21.81289 -21.13578 -20.90212 -19.27844 -18.31657 -17.97466 -17.60953 -16.93081 -16.87877 -16.80592 -16.53613 -16.43101 -15.76817 -15.53029 -15.40834 -15.19025 -15.03854 -14.95495 -14.69399 -14.42102 -13.98006 -13.71808 -13.38359 -13.27615 -13.21607 -13.09668 -12.86074 -12.72989 -12.67281 -12.64233 -12.40201 -12.27727 -12.18001 -12.05016 -11.95580 -11.84554 -11.72326 -11.23431 -11.17963 -11.03956 -11.00057 -10.82228 -10.62217 -10.14506 -10.00505 -9.01747 -7.95214 -5.24639 1.47192 1.48602 1.58131 1.60727 1.90517 2.54961 2.83295 2.98220 3.01242 3.39421 3.51057 3.56237 3.61488 3.78901 3.94166 4.01623 4.03375 4.10549 4.12455 4.13887 4.17988 4.31037 4.34585 4.42942 4.44633 4.46034 4.51627 4.60728 4.64065 4.69369 4.72428 4.80152 4.81816 4.86793 4.89499 4.93134 4.99014 5.05304 5.13598 5.14808 5.18688 5.22848 5.28707 5.33825 5.42990 5.50095 5.58889 6.08260 6.25398 6.30917 6.58525 7.27347 7.32747 8.06430 8.30140 9.28179 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.003649 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.492375 B = 7671.177351 C = 8838.820679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.372 6.372 4 C 0.081 3.919 5 H 0.095 0.905 6 C 0.511 3.489 7 O -0.566 6.566 8 N -0.699 5.699 9 C 0.176 3.824 10 H 0.059 0.941 11 C 0.150 3.850 12 N -0.743 5.743 13 C -0.241 4.241 14 H 0.080 0.920 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.299 1.299 21 C -0.169 4.169 22 C -0.155 4.155 23 C -0.182 4.182 24 C -0.089 4.089 25 C -0.150 4.150 26 C 0.060 3.940 27 O -0.402 6.402 28 C 0.066 3.934 29 C -0.141 4.141 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.409 0.591 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.372 0.628 39 H 0.249 0.751 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.108 0.892 50 H 0.064 0.936 51 H 0.098 0.902 52 H 0.065 0.935 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 3.917 20.958 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.290 6.290 4 C 0.019 3.981 5 H 0.112 0.888 6 C 0.298 3.702 7 O -0.444 6.444 8 N -0.352 5.352 9 C 0.071 3.929 10 H 0.077 0.923 11 C 0.023 3.977 12 N -0.386 5.386 13 C -0.373 4.373 14 H 0.098 0.902 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.802 3.198 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.227 1.227 21 C -0.188 4.188 22 C -0.192 4.192 23 C -0.219 4.219 24 C -0.108 4.108 25 C -0.188 4.188 26 C -0.016 4.016 27 O -0.321 6.321 28 C -0.010 4.010 29 C -0.178 4.178 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.245 0.755 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.204 0.796 39 H 0.058 0.942 40 H 0.144 0.856 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.082 0.918 49 H 0.126 0.874 50 H 0.083 0.917 51 H 0.116 0.884 52 H 0.083 0.917 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.708 4.597 20.734 21.306 hybrid contribution 0.383 -1.158 -1.575 1.992 sum -1.324 3.438 19.159 19.510 Atomic orbital electron populations 1.21733 0.92841 1.03378 1.02419 1.22908 0.96639 0.82809 1.00846 1.87994 1.19454 1.27794 1.93779 1.22013 0.84026 0.97494 0.94537 0.88768 1.20994 0.82444 0.84783 0.81976 1.90663 1.47391 1.49021 1.57354 1.45800 1.08813 1.31635 1.48906 1.20477 0.97108 0.85496 0.89802 0.92302 1.21059 0.95228 0.88482 0.92935 1.42530 1.19207 1.27269 1.49560 1.19679 0.97844 1.04638 1.15148 0.90223 1.25536 0.98740 0.99387 1.02888 1.69844 1.22744 1.22053 1.47395 0.85091 0.78550 0.78032 0.78170 1.18821 1.21942 1.22653 1.22632 1.03742 0.99265 0.93173 1.23078 1.00457 1.01821 0.93875 1.22986 0.94477 0.99909 1.04501 1.21574 1.00157 0.96922 0.92167 1.22322 1.02973 0.97877 0.95610 1.22699 0.96451 0.87278 0.95163 1.87905 1.74749 1.19874 1.49566 1.22604 1.00606 0.88858 0.88960 1.22076 1.00912 0.97248 0.97608 0.91600 0.88812 0.93562 0.90732 0.94035 0.75513 0.94808 0.93833 0.79584 0.94186 0.85626 0.88672 0.86792 0.87559 0.90752 0.88470 0.91142 0.89017 0.91788 0.87377 0.91730 0.88420 0.91688 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 10.28 71.99 0.74 -2.36 16 2 C 0.04 1.04 6.10 71.99 0.44 1.48 16 3 O -0.37 -11.05 8.26 -130.04 -1.07 -12.13 16 4 C 0.08 2.17 2.35 29.85 0.07 2.24 16 5 H 0.09 2.39 7.58 -2.38 -0.02 2.38 16 6 C 0.51 17.13 5.45 87.66 0.48 17.61 16 7 O -0.57 -23.94 14.73 15.90 0.23 -23.71 16 8 N -0.70 -21.37 2.72 -442.52 -1.20 -22.57 16 9 C 0.18 5.82 2.65 44.99 0.12 5.94 16 10 H 0.06 2.40 7.26 -2.38 -0.02 2.38 16 11 C 0.15 5.61 5.83 86.38 0.50 6.12 16 12 N -0.74 -36.55 5.43 -343.45 -1.87 -38.41 16 13 C -0.24 -13.05 9.99 84.04 0.84 -12.21 16 14 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 15 C -0.07 -4.13 5.50 84.87 0.47 -3.66 16 16 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 17 Si 0.97 45.31 29.55 68.60 2.03 47.33 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 21 C -0.17 -4.25 5.73 -10.79 -0.06 -4.31 16 22 C -0.16 -3.13 9.50 30.62 0.29 -2.84 16 23 C -0.18 -4.42 9.63 30.62 0.29 -4.12 16 24 C -0.09 -1.78 1.86 -10.67 -0.02 -1.80 16 25 C -0.15 -2.44 4.89 30.69 0.15 -2.29 16 26 C 0.06 0.89 6.84 72.02 0.49 1.38 16 27 O -0.40 -8.02 10.77 -148.98 -1.60 -9.62 16 28 C 0.07 1.18 6.84 72.01 0.49 1.68 16 29 C -0.14 -3.09 4.87 30.69 0.15 -2.94 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.38 6.27 -2.39 -0.01 1.36 16 34 H 0.04 1.06 8.01 -2.39 -0.02 1.04 16 35 H 0.41 11.20 8.69 -92.70 -0.81 10.40 16 36 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.37 20.15 7.33 -92.70 -0.68 19.47 16 39 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 40 H 0.13 2.81 8.08 -2.39 -0.02 2.79 16 41 H 0.10 1.91 4.86 -2.39 -0.01 1.90 16 42 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.29 5.74 -2.39 -0.01 2.27 16 45 H 0.10 1.66 7.05 -2.39 -0.02 1.64 16 46 H 0.07 1.30 6.16 -2.39 -0.01 1.28 16 47 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.06 1.60 5.67 -2.39 -0.01 1.59 16 53 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 Total: -1.00 -72.11 408.16 1.67 -70.44 By element: Atomic # 1 Polarization: 47.92 SS G_CDS: -0.57 Total: 47.35 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.45 Total: -0.08 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -2.79 Total: -119.59 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.44 Total: -45.46 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -72.11 1.67 -70.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269099601.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.001 kcal (2) G-P(sol) polarization free energy of solvation -72.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds