Wall clock time and date at job start Sat Apr 11 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47447 * 2 1 4 4 C 1.42897 * 114.00150 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47355 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47157 * 64.99662 * 5 4 3 7 7 C 1.42897 * 114.00477 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47576 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99965 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00308 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00566 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47469 * 180.02562 * 11 10 8 13 13 H 1.08992 * 109.43824 * 300.23703 * 12 11 10 14 14 C 1.53793 * 109.94867 * 60.04802 * 12 11 10 15 15 C 1.53696 * 108.29354 * 65.61202 * 14 12 11 16 16 H 1.09002 * 112.09807 * 188.30313 * 15 14 12 17 17 C 1.54613 * 108.37416 * 312.66217 * 15 14 12 18 18 C 1.54314 * 104.74263 * 88.89468 * 17 15 14 19 19 C 1.54993 * 104.71869 * 359.83068 * 18 17 15 20 20 H 1.09002 * 112.26415 * 146.97587 * 19 18 17 21 21 C 1.53153 * 109.43186 * 180.32518 * 12 11 10 22 22 N 1.48288 * 107.27756 * 64.69844 * 15 14 12 23 23 C 1.36939 * 128.21381 * 106.78084 * 22 15 14 24 24 H 1.07990 * 120.00349 * 215.06875 * 23 22 15 25 25 C 1.38812 * 119.99773 * 35.07026 * 23 22 15 26 26 N 1.31618 * 120.00486 * 175.14389 * 25 23 22 27 27 Si 1.86804 * 119.99824 * 355.14112 * 25 23 22 28 28 H 1.48500 * 109.47231 * 275.07718 * 27 25 23 29 29 H 1.48497 * 109.47166 * 35.08147 * 27 25 23 30 30 H 1.48500 * 109.46885 * 155.08048 * 27 25 23 31 31 H 1.09005 * 109.47153 * 299.99833 * 1 2 3 32 32 H 1.09000 * 109.47320 * 59.99648 * 1 2 3 33 33 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46687 * 239.99913 * 2 1 3 35 35 H 1.09000 * 109.47320 * 120.00352 * 2 1 3 36 36 H 1.08993 * 109.47258 * 60.00132 * 4 3 2 37 37 H 1.09003 * 109.46857 * 299.99684 * 4 3 2 38 38 H 1.09004 * 109.46907 * 305.00132 * 5 4 3 39 39 H 1.08996 * 109.47480 * 184.99883 * 5 4 3 40 40 H 1.09007 * 109.46767 * 60.00072 * 7 6 5 41 41 H 1.09001 * 109.47469 * 300.00703 * 7 6 5 42 42 H 0.97009 * 119.99893 * 0.02562 * 10 8 7 43 43 H 1.09007 * 109.47030 * 59.99994 * 11 10 8 44 44 H 1.09001 * 109.47021 * 300.00738 * 11 10 8 45 45 H 1.09005 * 109.28477 * 306.30400 * 14 12 11 46 46 H 1.08998 * 110.42543 * 185.58909 * 14 12 11 47 47 H 1.08999 * 110.37940 * 207.70698 * 17 15 14 48 48 H 1.09000 * 110.37906 * 330.07894 * 17 15 14 49 49 H 1.09006 * 110.37988 * 118.82640 * 18 17 15 50 50 H 1.09005 * 110.37893 * 241.18358 * 18 17 15 51 51 H 1.09000 * 109.56596 * 174.05399 * 21 12 11 52 52 H 1.08997 * 109.66884 * 53.75511 * 21 12 11 53 53 H 0.96994 * 120.00643 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 0.0001 6 8 3.3987 3.5446 1.2217 7 6 3.7206 4.9330 1.3250 8 6 3.2262 5.4666 2.6448 9 8 2.6549 4.7302 3.4208 10 7 3.4198 6.7617 2.9632 11 6 2.9397 7.2803 4.2464 12 6 3.2842 8.7669 4.3569 13 1 4.3646 8.8948 4.2904 14 6 2.6139 9.5472 3.2136 15 6 1.0910 9.4723 3.4065 16 1 0.5490 9.8809 2.5536 17 6 0.7076 8.0019 3.6919 18 6 0.8114 7.8595 5.2250 19 6 1.2530 9.2598 5.7215 20 1 0.8392 9.5001 6.7009 21 6 2.7891 9.3061 5.7021 22 7 0.7711 10.1846 4.6672 23 6 0.1771 11.4088 4.8212 24 1 0.4770 12.0564 5.6317 25 6 -0.8104 11.8174 3.9354 26 7 -1.4483 12.9508 4.1379 27 14 -1.2341 10.7588 2.4558 28 1 -0.3031 11.0699 1.3416 29 1 -1.1079 9.3249 2.8207 30 1 -2.6284 11.0400 2.0289 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.8332 0.9766 -0.8908 37 1 3.8340 0.9763 0.8892 38 1 3.3493 3.4418 -0.8412 39 1 4.9082 3.0254 -0.0899 40 1 3.2425 5.4783 0.5111 41 1 4.8012 5.0612 1.2626 42 1 3.8771 7.3507 2.3426 43 1 3.4174 6.7348 5.0604 44 1 1.8590 7.1525 4.3086 45 1 2.8841 9.0925 2.2605 46 1 2.9328 10.5894 3.2263 47 1 -0.3118 7.8042 3.3604 48 1 1.4059 7.3252 3.1996 49 1 -0.1570 7.5915 5.6477 50 1 1.5608 7.1126 5.4869 51 1 3.1250 10.3353 5.8288 52 1 3.1833 8.6913 6.5113 53 1 -2.1386 13.2361 3.5192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271749168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:17 Heat of formation + Delta-G solvation = -20.990059 kcal Electronic energy + Delta-G solvation = -31359.192858 eV Core-core repulsion = 27235.320402 eV Total energy + Delta-G solvation = -4123.872456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.88774 -40.42095 -39.25784 -38.05209 -36.24799 -34.67159 -33.12198 -32.81087 -32.54422 -32.15037 -30.61161 -29.13335 -27.42321 -25.16647 -24.97976 -23.68257 -23.49133 -22.45146 -21.86795 -21.45786 -20.35122 -18.93149 -18.38615 -18.17908 -17.90163 -17.73642 -17.19624 -16.85154 -16.55786 -16.17026 -15.72387 -15.46149 -15.35499 -14.88789 -14.85514 -14.71639 -14.28578 -14.18661 -14.04073 -13.66870 -13.53446 -13.45501 -13.39228 -13.27578 -13.11287 -12.88461 -12.72207 -12.50092 -12.38019 -12.19107 -12.15868 -11.89315 -11.83369 -11.44624 -11.37808 -11.16277 -10.96059 -10.82235 -10.71622 -10.65499 -10.59798 -10.53302 -9.49396 -8.80334 -8.15758 -5.57997 1.26538 1.38619 1.46917 1.67115 1.92519 2.40509 2.77569 3.05942 3.10465 3.23524 3.75370 3.80456 3.84413 3.92073 4.09184 4.13622 4.15524 4.16231 4.22861 4.27509 4.31227 4.34671 4.34927 4.36305 4.46345 4.48233 4.52475 4.54745 4.54855 4.71337 4.75721 4.79665 4.85293 4.89600 4.93094 5.00577 5.02301 5.08858 5.19066 5.23129 5.25344 5.31372 5.40869 5.44941 5.52940 5.59850 5.87813 6.09536 6.15861 6.33150 6.65394 6.76506 7.33204 7.51662 8.28816 9.02599 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.002633 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.964785 B =10633.410468 C =11570.820410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.058 3.942 5 C 0.056 3.944 6 O -0.394 6.394 7 C 0.043 3.957 8 C 0.503 3.497 9 O -0.574 6.574 10 N -0.711 5.711 11 C 0.010 3.990 12 C -0.070 4.070 13 H 0.089 0.911 14 C -0.122 4.122 15 C 0.125 3.875 16 H 0.043 0.957 17 C -0.161 4.161 18 C -0.153 4.153 19 C 0.145 3.855 20 H 0.066 0.934 21 C -0.116 4.116 22 N -0.620 5.620 23 C -0.222 4.222 24 H 0.050 0.950 25 C -0.035 4.035 26 N -0.965 5.965 27 Si 0.949 3.051 28 H -0.280 1.280 29 H -0.232 1.232 30 H -0.322 1.322 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.411 0.589 43 H 0.059 0.941 44 H 0.173 0.827 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.121 0.879 49 H 0.055 0.945 50 H 0.120 0.880 51 H 0.053 0.947 52 H 0.084 0.916 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.480 -24.476 -11.009 31.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.334 6.334 4 C -0.019 4.019 5 C -0.020 4.020 6 O -0.313 6.313 7 C -0.036 4.036 8 C 0.290 3.710 9 O -0.453 6.453 10 N -0.365 5.365 11 C -0.109 4.109 12 C -0.089 4.089 13 H 0.108 0.892 14 C -0.161 4.161 15 C 0.020 3.980 16 H 0.060 0.940 17 C -0.198 4.198 18 C -0.191 4.191 19 C 0.039 3.961 20 H 0.085 0.915 21 C -0.156 4.156 22 N -0.344 5.344 23 C -0.351 4.351 24 H 0.068 0.932 25 C -0.230 4.230 26 N -0.611 5.611 27 Si 0.781 3.219 28 H -0.207 1.207 29 H -0.156 1.156 30 H -0.252 1.252 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.248 0.752 43 H 0.077 0.923 44 H 0.189 0.811 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.138 0.862 49 H 0.074 0.926 50 H 0.138 0.862 51 H 0.072 0.928 52 H 0.103 0.897 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.696 -24.715 -10.325 31.045 hybrid contribution -0.246 0.822 -0.923 1.261 sum 15.450 -23.893 -11.248 30.596 Atomic orbital electron populations 1.21777 0.93730 1.03233 1.02269 1.22615 0.95922 0.83061 1.00875 1.87956 1.22050 1.27839 1.95585 1.22716 0.81341 0.95875 1.01920 1.22852 1.00224 0.92537 0.86360 1.88044 1.81738 1.21977 1.39566 1.22360 1.02556 0.83890 0.94784 1.20852 0.79219 0.82100 0.88812 1.90713 1.43234 1.58365 1.52963 1.46050 1.59698 1.09767 1.21023 1.24803 1.08169 0.93388 0.84569 1.21193 1.00217 0.92511 0.94968 0.89236 1.22235 0.95135 1.00059 0.98651 1.22043 0.94911 0.91566 0.89502 0.93960 1.23551 1.01523 0.97768 0.97004 1.23417 1.02204 0.98826 0.94672 1.21936 0.93601 0.88239 0.92328 0.91541 1.22022 0.95681 1.00857 0.96999 1.45416 1.70531 1.16797 1.01702 1.18405 1.11854 0.91702 1.13153 0.93238 1.25987 0.95549 0.98400 1.03071 1.69891 1.27058 1.25079 1.39112 0.85943 0.74572 0.81883 0.79543 1.20703 1.15585 1.25201 0.93484 0.92218 0.88994 0.91519 0.93234 0.88843 0.92936 0.91661 0.88439 0.88083 0.86798 0.75151 0.92270 0.81120 0.90092 0.92857 0.93573 0.86190 0.92606 0.86221 0.92808 0.89708 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.41 -8.97 10.31 -144.34 -1.49 -10.46 16 4 C 0.06 0.85 6.32 71.98 0.45 1.31 16 5 C 0.06 0.79 6.32 71.98 0.45 1.24 16 6 O -0.39 -9.06 9.84 -125.56 -1.24 -10.29 16 7 C 0.04 0.72 6.42 71.23 0.46 1.18 16 8 C 0.50 12.37 7.66 87.66 0.67 13.04 16 9 O -0.57 -20.26 16.50 16.00 0.26 -20.00 16 10 N -0.71 -14.38 4.39 -463.07 -2.03 -16.41 16 11 C 0.01 0.26 2.68 86.38 0.23 0.49 16 12 C -0.07 -1.76 2.74 -10.48 -0.03 -1.79 16 13 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 14 C -0.12 -3.69 5.37 31.10 0.17 -3.52 16 15 C 0.12 4.93 2.75 45.43 0.12 5.06 16 16 H 0.04 1.87 2.89 -2.39 -0.01 1.86 16 17 C -0.16 -5.61 5.42 31.59 0.17 -5.44 16 18 C -0.15 -5.06 5.74 31.72 0.18 -4.88 16 19 C 0.14 5.38 4.34 45.56 0.20 5.58 16 20 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 21 C -0.12 -3.41 5.37 30.88 0.17 -3.24 16 22 N -0.62 -28.66 2.55 -636.51 -1.62 -30.28 16 23 C -0.22 -12.75 10.84 84.03 0.91 -11.84 16 24 H 0.05 3.14 8.06 -2.92 -0.02 3.12 16 25 C -0.04 -2.12 5.50 84.86 0.47 -1.65 16 26 N -0.97 -62.12 13.97 21.65 0.30 -61.82 16 27 Si 0.95 47.38 24.68 68.60 1.69 49.07 16 28 H -0.28 -13.32 7.03 99.48 0.70 -12.62 16 29 H -0.23 -10.65 4.15 99.48 0.41 -10.24 16 30 H -0.32 -16.67 7.11 99.48 0.71 -15.96 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.41 5.67 7.34 -92.70 -0.68 4.99 16 43 H 0.06 1.45 8.00 -2.38 -0.02 1.44 16 44 H 0.17 4.95 1.11 -109.99 -0.12 4.82 16 45 H 0.08 1.89 6.76 -2.38 -0.02 1.88 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.05 1.76 6.54 -2.39 -0.02 1.75 16 48 H 0.12 3.65 3.94 -2.39 -0.01 3.64 16 49 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 50 H 0.12 3.38 4.85 -2.38 -0.01 3.37 16 51 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -82.13 391.16 1.54 -80.60 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.19 Total: 24.35 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 5.85 Total: -4.76 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -3.36 Total: -108.51 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -2.46 Total: -40.75 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.69 Total: 49.07 kcal Total: -82.13 1.54 -80.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271749168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.605 kcal (2) G-P(sol) polarization free energy of solvation -82.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds