Wall clock time and date at job start Sat Apr 11 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47060 * 2 1 4 4 C 1.42906 * 113.99997 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.57218 * 29.84613 * 4 3 2 6 6 C 1.53086 * 109.52493 * 269.68263 * 4 3 2 7 7 O 1.42896 * 109.41690 * 182.48317 * 6 4 3 8 8 C 1.42905 * 114.09731 * 61.16016 * 7 6 4 9 9 C 1.53096 * 109.41660 * 298.84331 * 8 7 6 10 10 C 1.53178 * 109.52037 * 149.99632 * 4 3 2 11 11 H 1.09003 * 109.61845 * 56.97772 * 10 4 3 12 12 C 1.52999 * 109.54695 * 296.75239 * 10 4 3 13 13 C 1.50704 * 109.47530 * 175.44395 * 12 10 4 14 14 O 1.21282 * 119.99336 * 0.02562 * 13 12 10 15 15 N 1.34771 * 120.00071 * 180.02562 * 13 12 10 16 16 C 1.46505 * 119.99854 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47208 * 174.81439 * 16 15 13 18 18 N 1.46502 * 112.84783 * 311.21423 * 17 16 15 19 19 C 1.36933 * 120.00039 * 293.75379 * 18 17 16 20 20 H 1.08004 * 120.00283 * 354.13743 * 19 18 17 21 21 C 1.38812 * 120.00145 * 173.87032 * 19 18 17 22 22 N 1.31619 * 120.00351 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00011 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47399 * 90.00276 * 23 21 19 25 25 H 1.48499 * 109.47406 * 210.00408 * 23 21 19 26 26 H 1.48506 * 109.47369 * 330.00440 * 23 21 19 27 27 C 1.53779 * 113.69017 * 82.48007 * 17 16 15 28 28 C 1.53781 * 87.07790 * 139.99161 * 27 17 16 29 29 C 1.53776 * 113.61368 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.47427 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47573 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46927 * 60.00327 * 1 2 3 33 33 H 1.08996 * 109.47423 * 239.99467 * 2 1 3 34 34 H 1.09001 * 109.46927 * 119.99673 * 2 1 3 35 35 H 1.09000 * 109.47951 * 62.50709 * 6 4 3 36 36 H 1.09004 * 109.48909 * 302.47452 * 6 4 3 37 37 H 1.09002 * 109.48379 * 178.86287 * 8 7 6 38 38 H 1.08996 * 109.47956 * 58.82255 * 8 7 6 39 39 H 1.09007 * 109.51880 * 297.70066 * 9 8 7 40 40 H 1.08997 * 109.57663 * 177.54752 * 9 8 7 41 41 H 1.09003 * 109.46711 * 55.44615 * 12 10 4 42 42 H 1.08994 * 109.47341 * 295.44958 * 12 10 4 43 43 H 0.96998 * 120.00170 * 0.02562 * 15 13 12 44 44 H 1.09002 * 109.47054 * 54.81090 * 16 15 13 45 45 H 1.09002 * 109.47119 * 294.81741 * 16 15 13 46 46 H 0.96998 * 120.00035 * 113.75023 * 18 17 16 47 47 H 0.96992 * 120.00347 * 179.97438 * 22 21 19 48 48 H 1.08997 * 113.61464 * 254.54192 * 27 17 16 49 49 H 1.08995 * 113.61640 * 25.44771 * 27 17 16 50 50 H 1.08998 * 113.61622 * 220.01481 * 28 27 17 51 51 H 1.09004 * 113.61123 * 89.11655 * 28 27 17 52 52 H 1.09001 * 113.61404 * 334.47810 * 29 17 16 53 53 H 1.08997 * 113.61594 * 105.38477 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8654 0.6008 -0.5102 6 6 3.9396 1.5087 1.4436 7 8 5.3583 1.6796 1.4416 8 6 5.7994 2.8892 0.8215 9 6 5.3653 2.8962 -0.6466 10 6 3.8426 2.7468 -0.7214 11 1 3.3682 3.6032 -0.2422 12 6 3.4070 2.6737 -2.1862 13 6 3.7121 3.9830 -2.8671 14 8 4.2278 4.8856 -2.2423 15 7 3.4120 4.1510 -4.1702 16 6 3.7092 5.4237 -4.8322 17 6 3.3931 5.3083 -6.3247 18 7 3.9687 4.1083 -6.9370 19 6 5.3279 3.9749 -7.0359 20 1 5.9731 4.7926 -6.7501 21 6 5.8769 2.7867 -7.4981 22 7 7.1834 2.6586 -7.5937 23 14 4.7616 1.3695 -7.9846 24 1 4.4180 1.4818 -9.4250 25 1 5.4617 0.0826 -7.7417 26 1 3.5182 1.4172 -7.1740 27 6 1.9069 5.5182 -6.6595 28 6 2.3773 6.3081 -7.8922 29 6 3.6725 6.5975 -7.1150 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.6866 0.5771 1.9498 36 1 3.4735 2.3444 1.9656 37 1 6.8860 2.9523 0.8795 38 1 5.3576 3.7430 1.3352 39 1 5.8390 2.0659 -1.1704 40 1 5.6623 3.8366 -1.1108 41 1 2.3358 2.4786 -2.2373 42 1 3.9469 1.8696 -2.6862 43 1 2.9993 3.4292 -4.6698 44 1 4.7646 5.6633 -4.7018 45 1 3.1003 6.2132 -4.3918 46 1 3.3870 3.4082 -7.2723 47 1 7.5670 1.8283 -7.9163 48 1 1.3805 4.5963 -6.9064 49 1 1.3762 6.1268 -5.9274 50 1 1.7812 7.1980 -8.0942 51 1 2.5279 5.6886 -8.7764 52 1 3.6244 7.5012 -6.5075 53 1 4.5712 6.5467 -7.7297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273122130.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:25 Heat of formation + Delta-G solvation = -127.479041 kcal Electronic energy + Delta-G solvation = -31426.035289 eV Core-core repulsion = 27297.545124 eV Total energy + Delta-G solvation = -4128.490165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39111 -40.62953 -39.72828 -38.44152 -35.56768 -35.27760 -35.04955 -32.54973 -32.44886 -31.00866 -30.13832 -28.36317 -26.68685 -25.60726 -24.78491 -24.32810 -23.48903 -22.89276 -21.45826 -21.03754 -19.90263 -19.54344 -18.34978 -17.91455 -17.39018 -17.26000 -16.68996 -16.61254 -16.40731 -16.21088 -16.04324 -15.85786 -15.57200 -15.29346 -14.73605 -14.62028 -14.53294 -14.46276 -13.99814 -13.85078 -13.55113 -13.49383 -13.19906 -13.12570 -13.09927 -12.98782 -12.75034 -12.45149 -12.38387 -12.21650 -12.15121 -11.98071 -11.78722 -11.72744 -11.65236 -11.57674 -11.41912 -10.98904 -10.96471 -10.90937 -10.68037 -10.15690 -9.87943 -9.30370 -7.98329 -5.33741 1.37185 1.42187 1.49556 1.73520 2.35173 2.48052 2.50271 3.00761 3.31620 3.44547 3.59067 3.60395 3.74359 3.76426 3.91863 3.95097 4.02511 4.08541 4.16171 4.19590 4.21332 4.28399 4.33583 4.41876 4.48114 4.52209 4.62862 4.67747 4.70728 4.74951 4.79827 4.80391 4.86231 4.89846 4.91127 4.98965 5.02233 5.06840 5.12752 5.16748 5.22457 5.31076 5.32078 5.38406 5.55834 5.68971 5.86018 6.01258 6.24779 6.32310 6.68862 7.11095 7.35995 7.84159 8.04391 9.23439 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.003164 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.935649 B = 8846.760241 C = 9039.207853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.388 6.388 4 C 0.069 3.931 5 H 0.073 0.927 6 C 0.042 3.958 7 O -0.391 6.391 8 C 0.063 3.937 9 C -0.153 4.153 10 C -0.061 4.061 11 H 0.074 0.926 12 C -0.126 4.126 13 C 0.506 3.494 14 O -0.584 6.584 15 N -0.702 5.702 16 C 0.131 3.869 17 C 0.161 3.839 18 N -0.721 5.721 19 C -0.210 4.210 20 H 0.046 0.954 21 C -0.063 4.063 22 N -0.987 5.987 23 Si 0.950 3.050 24 H -0.284 1.284 25 H -0.305 1.305 26 H -0.238 1.238 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.153 4.153 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.405 0.595 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.369 0.631 47 H 0.255 0.745 48 H 0.075 0.925 49 H 0.107 0.893 50 H 0.086 0.914 51 H 0.066 0.934 52 H 0.092 0.908 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 -3.227 14.740 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.307 6.307 4 C 0.011 3.989 5 H 0.091 0.909 6 C -0.035 4.035 7 O -0.310 6.310 8 C -0.014 4.014 9 C -0.191 4.191 10 C -0.080 4.080 11 H 0.093 0.907 12 C -0.166 4.166 13 C 0.294 3.706 14 O -0.465 6.465 15 N -0.352 5.352 16 C 0.005 3.995 17 C 0.070 3.930 18 N -0.364 5.364 19 C -0.341 4.341 20 H 0.064 0.936 21 C -0.253 4.253 22 N -0.638 5.638 23 Si 0.778 3.222 24 H -0.210 1.210 25 H -0.232 1.232 26 H -0.161 1.161 27 C -0.162 4.162 28 C -0.159 4.159 29 C -0.193 4.193 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.241 0.759 44 H 0.043 0.957 45 H 0.091 0.909 46 H 0.204 0.796 47 H 0.063 0.937 48 H 0.094 0.906 49 H 0.126 0.874 50 H 0.105 0.895 51 H 0.085 0.915 52 H 0.110 0.890 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.192 -2.520 15.262 22.393 hybrid contribution 0.371 -1.131 -1.128 1.640 sum -15.820 -3.651 14.134 21.526 Atomic orbital electron populations 1.21754 0.92757 1.03304 1.02785 1.22763 0.96400 0.82857 1.00993 1.87915 1.19763 1.27995 1.95074 1.22665 0.81890 0.97877 0.96477 0.90855 1.23095 0.81106 1.03361 0.95906 1.87918 1.21932 1.41911 1.79224 1.22658 1.00845 0.86649 0.91222 1.22335 0.95037 1.03374 0.98314 1.20925 0.95616 0.97515 0.93981 0.90745 1.21642 1.04876 0.94448 0.95619 1.21082 0.77316 0.90169 0.82042 1.90598 1.45173 1.45174 1.65573 1.45739 1.62101 1.17247 1.10066 1.21597 0.98820 0.85548 0.93549 1.21111 0.94902 0.87912 0.89105 1.42249 1.02605 1.19885 1.71672 1.18708 0.82811 0.97881 1.34724 0.93579 1.25461 0.96641 1.00501 1.02746 1.69900 1.11673 1.27272 1.54909 0.85486 0.79431 0.78723 0.78573 1.21006 1.23203 1.16144 1.23178 0.93418 1.01161 0.98440 1.22604 0.96101 1.00453 0.96699 1.23318 0.98515 0.97938 0.99502 0.89353 0.92046 0.92372 0.92804 0.92204 0.87171 0.92185 0.87633 0.92391 0.91841 0.90467 0.86618 0.88698 0.75943 0.95720 0.90857 0.79627 0.93660 0.90618 0.87432 0.89521 0.91487 0.89006 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.68 6.47 71.98 0.47 1.14 16 3 O -0.39 -7.77 9.39 -148.98 -1.40 -9.17 16 4 C 0.07 1.45 2.21 30.68 0.07 1.52 16 5 H 0.07 1.50 7.79 -2.39 -0.02 1.48 16 6 C 0.04 0.84 6.47 72.01 0.47 1.30 16 7 O -0.39 -9.35 10.77 -148.98 -1.60 -10.95 16 8 C 0.06 1.47 6.84 72.01 0.49 1.97 16 9 C -0.15 -4.20 5.12 30.69 0.16 -4.04 16 10 C -0.06 -1.55 1.64 -10.67 -0.02 -1.57 16 11 H 0.07 2.08 7.96 -2.39 -0.02 2.06 16 12 C -0.13 -3.28 5.12 29.85 0.15 -3.12 16 13 C 0.51 16.92 7.57 87.66 0.66 17.58 16 14 O -0.58 -23.14 13.97 -3.04 -0.04 -23.19 16 15 N -0.70 -23.04 5.38 -463.05 -2.49 -25.53 16 16 C 0.13 4.61 5.03 86.38 0.43 5.04 16 17 C 0.16 5.38 0.90 4.13 0.00 5.38 16 18 N -0.72 -29.79 4.38 -300.98 -1.32 -31.11 16 19 C -0.21 -11.26 9.73 84.03 0.82 -10.44 16 20 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 21 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 22 N -0.99 -62.40 13.97 21.65 0.30 -62.10 16 23 Si 0.95 42.71 27.68 68.60 1.90 44.61 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.24 -8.99 6.61 99.48 0.66 -8.34 16 27 C -0.12 -3.03 7.37 31.12 0.23 -2.80 16 28 C -0.12 -3.14 7.99 31.12 0.25 -2.89 16 29 C -0.15 -4.92 7.28 31.12 0.23 -4.69 16 30 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 34 H 0.06 0.73 7.96 -2.39 -0.02 0.71 16 35 H 0.11 1.74 7.96 -2.39 -0.02 1.72 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.08 2.56 6.03 -2.39 -0.01 2.55 16 41 H 0.12 2.56 7.66 -2.39 -0.02 2.54 16 42 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.41 12.17 8.13 -92.71 -0.75 11.41 16 44 H 0.02 1.07 8.13 -2.39 -0.02 1.05 16 45 H 0.07 2.28 7.95 -2.39 -0.02 2.26 16 46 H 0.37 14.33 5.81 -92.71 -0.54 13.79 16 47 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 49 H 0.11 2.14 7.97 -2.39 -0.02 2.12 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.09 2.55 8.10 -2.39 -0.02 2.54 16 53 H 0.04 1.63 7.83 -2.39 -0.02 1.61 16 Total: -1.00 -71.08 415.13 0.51 -70.56 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: -0.45 Total: 46.64 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.62 Total: 0.24 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -3.51 Total: -118.74 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -3.05 Total: -43.31 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.90 Total: 44.61 kcal Total: -71.08 0.51 -70.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273122130.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.914 kcal (2) G-P(sol) polarization free energy of solvation -71.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds