Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 119.99955 * 2 1 4 4 C 1.50697 * 119.99812 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47337 * 355.00227 * 4 2 1 6 6 C 1.53005 * 109.46902 * 115.00281 * 4 2 1 7 7 C 1.50699 * 109.46993 * 185.00218 * 6 4 2 8 8 O 1.21280 * 120.00227 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00219 * 179.97438 * 7 6 4 10 10 C 1.46932 * 120.62586 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77197 * 233.62510 * 10 9 7 12 12 C 1.53103 * 109.33643 * 305.36933 * 11 10 9 13 13 C 1.53042 * 109.50469 * 61.33744 * 12 11 10 14 14 C 1.52999 * 109.49905 * 178.68843 * 13 12 11 15 15 O 1.42908 * 109.46749 * 299.93591 * 14 13 12 16 16 N 1.46506 * 109.49433 * 58.62143 * 13 12 11 17 17 C 1.36938 * 119.99589 * 60.06738 * 16 13 12 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 13 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47211 * 119.99797 * 21 19 17 24 24 H 1.48493 * 109.47327 * 239.99664 * 21 19 17 25 25 C 1.46928 * 120.63516 * 179.97438 * 9 7 6 26 26 O 1.42903 * 109.46983 * 234.99595 * 4 2 1 27 27 C 1.42904 * 113.99589 * 90.00517 * 26 4 2 28 28 C 1.52996 * 109.47032 * 179.97438 * 27 26 4 29 29 H 1.08004 * 120.00003 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99782 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47225 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47638 * 299.99969 * 3 2 1 33 33 H 1.09001 * 109.47607 * 60.00370 * 3 2 1 34 34 H 1.08994 * 109.47245 * 64.99812 * 6 4 2 35 35 H 1.09007 * 109.46979 * 304.99599 * 6 4 2 36 36 H 1.08992 * 109.58580 * 353.41696 * 10 9 7 37 37 H 1.09004 * 109.58757 * 113.70175 * 10 9 7 38 38 H 1.09005 * 109.49336 * 65.32205 * 11 10 9 39 39 H 1.09002 * 109.49679 * 185.37768 * 11 10 9 40 40 H 1.09004 * 109.44467 * 301.34847 * 12 11 10 41 41 H 1.08990 * 109.50906 * 181.36848 * 12 11 10 42 42 H 1.08991 * 109.46846 * 59.93708 * 14 13 12 43 43 H 1.09001 * 109.47011 * 179.97438 * 14 13 12 44 44 H 0.96699 * 113.99169 * 180.02562 * 15 14 13 45 45 H 0.96999 * 120.00080 * 240.06228 * 16 13 12 46 46 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.58344 * 6.58161 * 25 9 7 48 48 H 1.08993 * 109.70445 * 246.22743 * 25 9 7 49 49 H 1.08998 * 109.46936 * 299.99507 * 27 26 4 50 50 H 1.08994 * 109.47172 * 59.99820 * 27 26 4 51 51 H 1.08997 * 109.47193 * 180.02562 * 28 27 26 52 52 H 1.09005 * 109.47157 * 299.99898 * 28 27 26 53 53 H 1.08998 * 109.47537 * 59.99536 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3585 -2.1317 0.0886 6 6 2.8465 -1.4413 -1.3080 7 6 3.5008 -2.7977 -1.3626 8 8 3.3556 -3.5784 -0.4460 9 7 4.2474 -3.1433 -2.4302 10 6 4.4320 -2.2086 -3.5487 11 6 4.0349 -2.9124 -4.8501 12 6 4.8264 -4.2162 -4.9833 13 6 4.4894 -5.1406 -3.8111 14 6 5.2555 -6.4563 -3.9616 15 8 4.8809 -7.0881 -5.1875 16 7 3.0496 -5.4115 -3.8004 17 6 2.4588 -6.0166 -4.8774 18 1 3.0541 -6.2937 -5.7349 19 6 1.0946 -6.2728 -4.8675 20 7 0.3699 -5.9392 -3.8206 21 14 0.2885 -7.0975 -6.3370 22 1 1.3147 -7.3739 -7.3740 23 1 -0.3375 -8.3736 -5.9067 24 1 -0.7529 -6.2001 -6.8986 25 6 4.8920 -4.4619 -2.4977 26 8 2.9709 -1.3317 1.1030 27 6 2.4139 -1.8776 2.3004 28 6 3.4683 -1.8571 3.4089 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 3.1352 1.1059 0.0005 32 1 1.8002 1.8767 -0.8899 33 1 1.8002 1.8767 0.8900 34 1 3.6116 -0.6666 -1.3557 35 1 2.1656 -1.3321 -2.1523 36 1 3.8015 -1.3320 -3.4002 37 1 5.4769 -1.9026 -3.6005 38 1 2.9679 -3.1350 -4.8324 39 1 4.2570 -2.2634 -5.6972 40 1 5.8938 -3.9950 -4.9760 41 1 4.5639 -4.7073 -5.9201 42 1 6.3265 -6.2542 -3.9695 43 1 5.0155 -7.1142 -3.1263 44 1 5.3286 -7.9299 -5.3489 45 1 2.5149 -5.1624 -3.0303 46 1 -0.5833 -6.1185 -3.8135 47 1 4.5650 -5.0720 -1.6557 48 1 5.9750 -4.3436 -2.4644 49 1 1.5538 -1.2816 2.6056 50 1 2.0981 -2.9049 2.1188 51 1 3.0435 -2.2739 4.3221 52 1 4.3282 -2.4533 3.1035 53 1 3.7845 -0.8300 3.5906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273884872.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -121.954572 kcal Electronic energy + Delta-G solvation = -32382.238748 eV Core-core repulsion = 28253.988142 eV Total energy + Delta-G solvation = -4128.250606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41138 -39.89615 -38.82087 -37.08336 -36.10227 -35.53473 -33.81574 -32.74644 -32.51406 -31.21231 -30.30514 -28.22015 -26.85936 -26.55899 -25.60710 -24.35048 -23.65643 -23.03058 -20.57452 -19.84012 -19.59577 -19.14563 -18.04463 -17.91106 -17.76611 -16.92616 -16.71805 -16.44219 -16.21395 -15.79255 -15.53223 -15.30957 -15.25450 -14.93568 -14.72629 -14.65111 -14.39239 -14.08595 -13.93737 -13.79811 -13.46062 -13.34309 -13.24259 -13.13145 -12.88656 -12.79459 -12.77379 -12.58475 -12.56463 -12.45556 -11.97942 -11.96332 -11.83064 -11.73990 -11.66047 -11.48925 -11.30689 -10.82880 -10.64964 -10.54512 -10.46665 -10.08585 -9.46976 -8.86547 -7.78282 -5.03182 1.17504 1.45507 1.46709 1.56758 1.74411 2.12486 2.64655 2.76903 3.43761 3.49792 3.69706 3.79382 3.90911 3.92521 4.01152 4.10454 4.18118 4.21612 4.29134 4.34066 4.38532 4.42271 4.47550 4.50004 4.54958 4.61560 4.66327 4.71105 4.72856 4.79204 4.82585 4.87590 4.92949 4.95889 5.02215 5.03885 5.06645 5.07760 5.18370 5.24353 5.34738 5.59477 5.61488 5.64603 5.72162 5.82380 5.92081 6.31413 6.43880 6.54243 7.13824 7.30583 7.50393 8.22293 8.45860 9.46371 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.003624 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.562107 B = 7725.247657 C = 8461.881593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.106 4.106 4 C 0.142 3.858 5 H 0.039 0.961 6 C -0.124 4.124 7 C 0.511 3.489 8 O -0.580 6.580 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.126 4.126 12 C -0.108 4.108 13 C 0.175 3.825 14 C 0.076 3.924 15 O -0.566 6.566 16 N -0.714 5.714 17 C -0.175 4.175 18 H 0.095 0.905 19 C -0.096 4.096 20 N -0.983 5.983 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.307 1.307 24 H -0.302 1.302 25 C 0.121 3.879 26 O -0.377 6.377 27 C 0.060 3.940 28 C -0.140 4.140 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.020 0.980 44 H 0.376 0.624 45 H 0.363 0.637 46 H 0.239 0.761 47 H 0.059 0.941 48 H 0.101 0.899 49 H 0.053 0.947 50 H 0.025 0.975 51 H 0.086 0.914 52 H 0.049 0.951 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.576 15.358 6.171 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.152 4.152 3 C -0.163 4.163 4 C 0.084 3.916 5 H 0.057 0.943 6 C -0.163 4.163 7 C 0.301 3.699 8 O -0.460 6.460 9 N -0.334 5.334 10 C -0.011 4.011 11 C -0.164 4.164 12 C -0.147 4.147 13 C 0.084 3.916 14 C -0.004 4.004 15 O -0.372 6.372 16 N -0.352 5.352 17 C -0.308 4.308 18 H 0.113 0.887 19 C -0.286 4.286 20 N -0.638 5.638 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.235 1.235 24 H -0.231 1.231 25 C -0.002 4.002 26 O -0.297 6.297 27 C -0.017 4.017 28 C -0.197 4.197 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.223 0.777 45 H 0.195 0.805 46 H 0.048 0.952 47 H 0.078 0.922 48 H 0.119 0.881 49 H 0.071 0.929 50 H 0.044 0.956 51 H 0.104 0.896 52 H 0.068 0.932 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.343 15.468 6.403 20.222 hybrid contribution -1.397 -1.863 -0.365 2.357 sum 9.946 13.604 6.038 17.901 Atomic orbital electron populations 1.23915 0.95229 1.02629 1.00371 1.22274 0.95584 0.96354 1.00969 1.20722 1.00099 0.92731 1.02741 1.20711 0.90483 0.94029 0.86374 0.94288 1.21783 1.01611 0.94727 0.98185 1.21000 0.77854 0.89702 0.81345 1.90651 1.62278 1.54271 1.38821 1.47984 1.50039 1.16018 1.19317 1.21988 1.03247 0.91485 0.84343 1.21763 1.00185 0.96811 0.97636 1.21740 0.99224 0.95377 0.98405 1.20397 0.84474 0.92492 0.94211 1.22620 0.97317 0.94518 0.85953 1.86725 1.70419 1.39875 1.40136 1.42572 1.03075 1.70774 1.18819 1.19869 0.90206 1.24800 0.95890 0.88738 1.25401 0.97760 1.05464 0.99939 1.69874 1.05241 1.57353 1.31328 0.85236 0.78261 0.77187 0.80259 1.19146 1.23501 1.23050 1.21568 0.97852 0.84085 0.96719 1.87823 1.39004 1.83197 1.19657 1.22474 0.97276 0.96379 0.85555 1.21682 0.98387 1.03020 0.96620 0.89739 0.85797 0.91664 0.90110 0.90947 0.85396 0.87095 0.88392 0.88289 0.94366 0.89312 0.90262 0.93538 0.91403 0.96124 0.77670 0.80531 0.95227 0.92238 0.88068 0.92917 0.95628 0.89556 0.93226 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.05 13.95 67.78 0.95 -3.10 16 2 C -0.15 -3.45 5.05 -16.49 -0.08 -3.53 16 3 C -0.11 -1.79 9.69 71.23 0.69 -1.10 16 4 C 0.14 4.16 1.78 29.85 0.05 4.21 16 5 H 0.04 1.40 7.25 -2.39 -0.02 1.38 16 6 C -0.12 -3.40 3.59 29.85 0.11 -3.29 16 7 C 0.51 18.29 7.58 87.66 0.66 18.95 16 8 O -0.58 -25.85 14.83 10.76 0.16 -25.69 16 9 N -0.60 -19.11 2.87 -818.84 -2.35 -21.45 16 10 C 0.11 2.64 6.34 86.36 0.55 3.19 16 11 C -0.13 -3.75 5.93 30.69 0.18 -3.57 16 12 C -0.11 -3.48 4.39 30.64 0.13 -3.35 16 13 C 0.18 6.53 0.68 3.69 0.00 6.53 16 14 C 0.08 2.58 6.08 71.98 0.44 3.01 16 15 O -0.57 -20.49 9.97 -148.98 -1.48 -21.97 16 16 N -0.71 -35.75 4.22 -302.94 -1.28 -37.03 16 17 C -0.18 -9.70 8.29 84.03 0.70 -9.01 16 18 H 0.10 5.16 5.31 -2.91 -0.02 5.15 16 19 C -0.10 -5.73 5.50 84.86 0.47 -5.27 16 20 N -0.98 -63.55 13.06 21.65 0.28 -63.27 16 21 Si 0.96 48.95 29.55 68.60 2.03 50.97 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 24 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 25 C 0.12 4.06 5.15 86.37 0.44 4.51 16 26 O -0.38 -11.35 9.01 -135.19 -1.22 -12.57 16 27 C 0.06 1.64 6.46 71.98 0.46 2.11 16 28 C -0.14 -3.05 10.28 71.98 0.74 -2.31 16 29 H 0.08 2.10 7.84 -2.91 -0.02 2.07 16 30 H 0.12 2.10 8.05 -2.91 -0.02 2.07 16 31 H 0.06 1.13 7.50 -2.38 -0.02 1.11 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.13 2.67 7.46 -2.39 -0.02 2.66 16 35 H 0.11 2.93 7.69 -2.38 -0.02 2.92 16 36 H 0.10 1.94 5.93 -2.39 -0.01 1.93 16 37 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.04 1.54 7.53 -2.38 -0.02 1.52 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.05 1.77 6.83 -2.39 -0.02 1.75 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.38 9.79 9.12 -74.06 -0.68 9.12 16 45 H 0.36 20.98 7.65 -92.71 -0.71 20.27 16 46 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 47 H 0.06 2.40 7.01 -2.39 -0.02 2.39 16 48 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 49 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 50 H 0.03 0.83 8.08 -2.39 -0.02 0.81 16 51 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 53 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -79.54 414.82 2.15 -77.39 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -0.49 Total: 45.63 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 6.49 Total: 8.00 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -3.34 Total: -121.75 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: -2.54 Total: -60.23 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.97 kcal Total: -79.54 2.15 -77.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273884872.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.567 kcal (2) G-P(sol) polarization free energy of solvation -79.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds