Wall clock time and date at job start Sat Apr 11 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42906 * 109.47183 * 2 1 4 4 C 1.42892 * 113.99952 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46864 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47211 * 64.99751 * 5 4 3 7 7 C 1.46198 * 118.77652 * 270.01612 * 6 5 4 8 8 C 1.52432 * 109.93886 * 162.46601 * 7 6 5 9 9 C 1.53781 * 110.31207 * 285.77615 * 8 7 6 10 10 C 1.54504 * 104.88226 * 240.73917 * 9 8 7 11 11 N 1.48602 * 104.60615 * 23.78500 * 10 9 8 12 12 C 1.46907 * 110.99760 * 201.21755 * 11 10 9 13 13 C 1.52999 * 109.46976 * 290.12582 * 12 11 10 14 14 C 1.52996 * 109.47092 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47442 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00462 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99905 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00208 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47471 * 59.99762 * 19 17 15 21 21 H 1.48499 * 109.47070 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46821 * 299.99487 * 19 17 15 23 23 C 1.48669 * 104.29891 * 320.81541 * 11 10 9 24 24 O 1.42387 * 110.09122 * 47.68748 * 8 7 6 25 25 C 1.43040 * 113.27061 * 293.22284 * 24 8 7 26 26 C 1.33844 * 118.77587 * 90.00338 * 6 5 4 27 27 O 1.21281 * 118.69399 * 2.41053 * 26 6 5 28 28 H 1.08994 * 109.46885 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47003 * 300.00047 * 1 2 3 30 30 H 1.08999 * 109.46658 * 60.00267 * 1 2 3 31 31 H 1.08993 * 109.47003 * 239.99953 * 2 1 3 32 32 H 1.08999 * 109.46658 * 119.99733 * 2 1 3 33 33 H 1.08995 * 109.47310 * 59.99659 * 4 3 2 34 34 H 1.09005 * 109.46853 * 299.99856 * 4 3 2 35 35 H 1.09001 * 109.47344 * 304.99630 * 5 4 3 36 36 H 1.09007 * 109.46742 * 184.99703 * 5 4 3 37 37 H 1.08992 * 109.39846 * 282.61164 * 7 6 5 38 38 H 1.08998 * 109.38781 * 42.42537 * 7 6 5 39 39 H 1.09001 * 110.35860 * 359.59244 * 9 8 7 40 40 H 1.08997 * 110.35458 * 121.88822 * 9 8 7 41 41 H 1.08999 * 110.40578 * 142.56827 * 10 9 8 42 42 H 1.08996 * 110.40897 * 265.00045 * 10 9 8 43 43 H 1.09003 * 109.47009 * 50.12347 * 12 11 10 44 44 H 1.08997 * 109.47028 * 170.12683 * 12 11 10 45 45 H 1.09003 * 109.47060 * 299.99734 * 13 12 11 46 46 H 1.08997 * 109.47159 * 60.00181 * 13 12 11 47 47 H 1.08996 * 109.47698 * 300.00256 * 14 13 12 48 48 H 1.09001 * 109.47418 * 59.99942 * 14 13 12 49 49 H 0.96992 * 119.99953 * 180.02562 * 18 17 15 50 50 H 1.09000 * 110.43659 * 280.27683 * 23 11 10 51 51 H 1.08998 * 110.43235 * 157.77891 * 23 11 10 52 52 H 1.09002 * 109.39853 * 288.59183 * 25 24 8 53 53 H 1.09003 * 109.39853 * 168.77039 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 3.3878 3.5600 1.2525 7 6 2.0551 4.1581 1.3133 8 6 1.6362 4.3475 2.7666 9 6 1.2625 2.9947 3.3951 10 6 -0.2178 3.1458 3.8111 11 7 -0.7471 4.2188 2.9297 12 6 -1.9523 4.8282 3.5078 13 6 -3.1068 3.8257 3.4538 14 6 -4.3618 4.4602 4.0564 15 6 -5.4991 3.4730 4.0027 16 1 -5.3424 2.4909 3.5813 17 6 -6.7398 3.8233 4.4915 18 7 -6.9306 5.0189 5.0052 19 14 -8.1494 2.5993 4.4256 20 1 -7.7879 1.3856 5.2011 21 1 -9.3676 3.2152 5.0104 22 1 -8.4133 2.2239 3.0132 23 6 0.3615 5.2058 2.8465 24 8 2.6898 4.9593 3.5036 25 6 3.8439 4.1251 3.6382 26 6 4.2229 3.5590 2.2984 27 8 5.3296 3.0828 2.1595 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8333 0.9767 -0.8907 34 1 3.8340 0.9764 0.8892 35 1 3.3492 3.4420 -0.8412 36 1 4.9082 3.0255 -0.0898 37 1 2.0693 5.1256 0.8117 38 1 1.3412 3.5024 0.8149 39 1 1.3709 2.1938 2.6637 40 1 1.8837 2.7980 4.2689 41 1 -0.7573 2.2140 3.6416 42 1 -0.2902 3.4431 4.8573 43 1 -1.7586 5.1038 4.5444 44 1 -2.2177 5.7190 2.9385 45 1 -3.3005 3.5501 2.4171 46 1 -2.8414 2.9349 4.0231 47 1 -4.1679 4.7355 5.0930 48 1 -4.6275 5.3512 3.4875 49 1 -7.8033 5.2652 5.3494 50 1 0.3804 5.8330 3.7378 51 1 0.2589 5.8187 1.9510 52 1 3.6225 3.3093 4.3264 53 1 4.6729 4.7144 4.0300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040992.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:24 Heat of formation + Delta-G solvation = -141.832432 kcal Electronic energy + Delta-G solvation = -31523.809504 eV Core-core repulsion = 27394.696929 eV Total energy + Delta-G solvation = -4129.112574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28010 -40.21088 -38.99100 -38.21529 -36.55018 -35.89321 -34.05206 -32.69991 -31.67704 -30.88541 -30.50021 -28.42427 -27.82841 -26.39217 -24.75151 -24.14898 -23.64139 -22.72527 -21.87661 -21.43689 -19.65292 -18.77931 -18.42849 -18.08018 -17.58326 -17.18884 -16.95758 -16.87425 -16.54285 -16.44559 -15.97029 -15.77400 -15.39052 -15.21641 -14.87239 -14.71772 -14.36255 -14.35784 -14.14662 -14.00201 -13.63198 -13.50722 -13.47588 -13.15143 -12.89785 -12.87591 -12.78957 -12.55699 -12.51681 -12.37885 -12.28209 -12.23550 -12.17687 -12.05982 -11.79594 -11.47711 -11.37397 -11.28778 -11.07830 -10.63455 -10.52371 -10.39215 -9.82967 -9.48908 -8.18002 -6.28642 1.35488 1.41314 1.44199 1.52058 1.74511 2.37156 2.43768 2.72629 3.10376 3.15281 3.18892 3.46297 3.52451 3.66533 4.00544 4.07556 4.11117 4.15780 4.17684 4.20218 4.29112 4.30633 4.34856 4.43371 4.48703 4.51365 4.54416 4.57018 4.63590 4.69314 4.72017 4.75891 4.78763 4.80890 4.94142 4.96043 4.97462 5.03031 5.06724 5.12943 5.26655 5.29451 5.33992 5.54615 5.66550 5.79602 5.88931 5.94527 6.01477 6.20335 6.29377 6.30976 6.88398 6.90163 7.40462 8.93726 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.002575 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.971710 B =10870.176993 C =12324.188152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.397 6.397 4 C 0.051 3.949 5 C 0.110 3.890 6 N -0.591 5.591 7 C 0.108 3.892 8 C 0.103 3.897 9 C -0.141 4.141 10 C 0.036 3.964 11 N -0.506 5.506 12 C 0.058 3.942 13 C -0.085 4.085 14 C 0.026 3.974 15 C -0.542 4.542 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.050 3.950 24 O -0.367 6.367 25 C 0.048 3.952 26 C 0.485 3.515 27 O -0.581 6.581 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.029 0.971 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.047 0.953 47 H -0.011 1.011 48 H -0.007 1.007 49 H 0.263 0.737 50 H 0.059 0.941 51 H 0.106 0.894 52 H 0.104 0.896 53 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.187 -5.966 -9.860 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.317 6.317 4 C -0.027 4.027 5 C -0.012 4.012 6 N -0.322 5.322 7 C -0.015 4.015 8 C 0.063 3.937 9 C -0.179 4.179 10 C -0.091 4.091 11 N -0.230 5.230 12 C -0.070 4.070 13 C -0.123 4.123 14 C -0.012 4.012 15 C -0.580 4.580 16 H 0.077 0.923 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.191 1.191 23 C -0.079 4.079 24 O -0.286 6.286 25 C -0.030 4.030 26 C 0.274 3.726 27 O -0.463 6.463 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.007 0.993 48 H 0.011 0.989 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.124 0.876 52 H 0.121 0.879 53 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 24.312 -5.938 -10.308 27.066 hybrid contribution -0.677 -0.488 1.027 1.323 sum 23.636 -6.426 -9.281 26.193 Atomic orbital electron populations 1.21731 0.93473 1.02872 1.02624 1.22522 0.95658 0.83178 1.00418 1.87886 1.20926 1.27407 1.95492 1.22886 0.81684 0.97152 1.00957 1.21716 1.01607 0.91741 0.86158 1.47532 1.15945 1.56321 1.12412 1.22142 0.83183 0.99865 0.96285 1.22045 0.87745 0.93327 0.90591 1.22919 0.96123 0.97221 1.01640 1.23087 0.94470 0.96569 0.95020 1.65494 1.02964 1.09060 1.45518 1.22202 0.90101 0.97667 0.97061 1.21311 0.93417 0.97403 1.00197 1.18965 0.92765 0.95162 0.94271 1.21671 0.96089 1.00595 1.39634 0.92269 1.25968 1.01807 0.97207 0.94842 1.70087 1.24211 1.21347 1.41793 0.85535 0.77927 0.78936 0.78873 1.19207 1.20907 1.19115 1.22961 0.87259 0.94265 1.03380 1.88065 1.24219 1.41501 1.74799 1.22943 0.89841 0.97444 0.92810 1.21280 0.84440 0.79139 0.87773 1.90705 1.22243 1.49048 1.84310 0.89924 0.92943 0.92197 0.92243 0.93635 0.90444 0.94480 0.87782 0.88238 0.89708 0.87729 0.89750 0.89687 0.90090 0.93952 0.95261 0.90794 0.92769 0.93430 0.99260 0.98887 0.92807 0.92321 0.87627 0.87868 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.28 71.99 0.74 -1.70 16 2 C 0.06 0.89 6.66 71.99 0.48 1.37 16 3 O -0.40 -7.10 8.92 -148.98 -1.33 -8.43 16 4 C 0.05 0.78 6.28 71.98 0.45 1.23 16 5 C 0.11 1.69 5.74 86.38 0.50 2.18 16 6 N -0.59 -10.79 2.77 -825.58 -2.29 -13.08 16 7 C 0.11 1.90 4.97 86.25 0.43 2.33 16 8 C 0.10 2.01 1.03 -10.42 -0.01 2.00 16 9 C -0.14 -2.81 5.66 31.37 0.18 -2.64 16 10 C 0.04 0.90 5.75 86.49 0.50 1.40 16 11 N -0.51 -13.51 5.37 -881.83 -4.74 -18.25 16 12 C 0.06 1.90 4.81 86.30 0.41 2.31 16 13 C -0.09 -3.46 5.21 30.59 0.16 -3.30 16 14 C 0.03 1.36 4.97 29.85 0.15 1.51 16 15 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 18 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 19 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.05 1.09 5.78 86.26 0.50 1.59 16 24 O -0.37 -7.30 10.34 -148.98 -1.54 -8.84 16 25 C 0.05 0.83 6.43 71.11 0.46 1.28 16 26 C 0.48 10.17 7.42 87.68 0.65 10.82 16 27 O -0.58 -15.49 16.34 -3.03 -0.05 -15.54 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.10 1.26 8.04 -2.39 -0.02 1.25 16 36 H 0.10 1.60 7.22 -2.38 -0.02 1.58 16 37 H 0.08 1.33 7.93 -2.39 -0.02 1.31 16 38 H 0.10 2.03 6.68 -2.39 -0.02 2.01 16 39 H 0.08 1.74 7.62 -2.39 -0.02 1.72 16 40 H 0.08 1.53 6.16 -2.39 -0.01 1.52 16 41 H 0.08 2.08 7.78 -2.39 -0.02 2.07 16 42 H 0.04 1.09 7.82 -2.39 -0.02 1.08 16 43 H 0.03 0.99 7.88 -2.39 -0.02 0.97 16 44 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 45 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.05 1.89 7.26 -2.39 -0.02 1.87 16 47 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 50 H 0.06 1.37 7.92 -2.39 -0.02 1.35 16 51 H 0.11 2.05 7.70 -2.39 -0.02 2.03 16 52 H 0.10 1.52 6.50 -2.39 -0.02 1.50 16 53 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -68.71 413.68 -0.48 -69.19 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.86 Total: 15.22 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 6.28 Total: -9.80 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -6.74 Total: -87.97 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -2.92 Total: -32.81 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.71 -0.48 -69.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040992.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.640 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds