Wall clock time and date at job start Sat Apr 11 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46863 * 2 1 4 4 C 1.42900 * 113.99925 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47201 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47112 * 65.00012 * 5 4 3 7 7 C 1.46196 * 118.77685 * 269.97601 * 6 5 4 8 8 C 1.52443 * 109.94077 * 162.46837 * 7 6 5 9 9 C 1.54110 * 110.11831 * 169.29367 * 8 7 6 10 10 C 1.55041 * 102.81347 * 97.56173 * 9 8 7 11 11 N 1.48584 * 103.28613 * 37.01662 * 10 9 8 12 12 C 1.46895 * 111.00135 * 200.55829 * 11 10 9 13 13 C 1.53000 * 109.47030 * 287.41561 * 12 11 10 14 14 C 1.53002 * 109.46763 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.46900 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99885 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99978 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46869 * 90.00264 * 19 17 15 21 21 H 1.48496 * 109.47207 * 210.00235 * 19 17 15 22 22 H 1.48495 * 109.46962 * 330.00452 * 19 17 15 23 23 C 1.48040 * 105.83505 * 321.08111 * 11 10 9 24 24 O 1.42394 * 110.07037 * 47.71210 * 8 7 6 25 25 C 1.43035 * 113.27808 * 293.21693 * 24 8 7 26 26 C 1.33851 * 118.77635 * 90.00161 * 6 5 4 27 27 O 1.21285 * 118.69457 * 2.38436 * 26 6 5 28 28 H 1.08999 * 109.47266 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47391 * 300.00634 * 1 2 3 30 30 H 1.08996 * 109.46802 * 60.00791 * 1 2 3 31 31 H 1.08998 * 109.47391 * 239.99366 * 2 1 3 32 32 H 1.09004 * 109.46533 * 119.99396 * 2 1 3 33 33 H 1.09004 * 109.47350 * 59.99660 * 4 3 2 34 34 H 1.09002 * 109.47180 * 299.99682 * 4 3 2 35 35 H 1.08998 * 109.47309 * 304.99765 * 5 4 3 36 36 H 1.09008 * 109.47216 * 184.99937 * 5 4 3 37 37 H 1.09001 * 109.39581 * 282.61346 * 7 6 5 38 38 H 1.08998 * 109.39112 * 42.42251 * 7 6 5 39 39 H 1.09007 * 110.74042 * 215.89134 * 9 8 7 40 40 H 1.08998 * 110.74549 * 339.22976 * 9 8 7 41 41 H 1.08994 * 110.65952 * 278.57053 * 10 9 8 42 42 H 1.09001 * 110.80228 * 155.52952 * 10 9 8 43 43 H 1.09007 * 109.47184 * 47.41317 * 12 11 10 44 44 H 1.08993 * 109.47416 * 167.41305 * 12 11 10 45 45 H 1.08995 * 109.46905 * 299.99539 * 13 12 11 46 46 H 1.08997 * 109.47347 * 60.00118 * 13 12 11 47 47 H 1.09002 * 109.47310 * 299.99216 * 14 13 12 48 48 H 1.09000 * 109.47769 * 60.00146 * 14 13 12 49 49 H 0.96998 * 120.00203 * 179.97438 * 18 17 15 50 50 H 1.09001 * 109.97710 * 265.87724 * 23 11 10 51 51 H 1.08994 * 110.01252 * 144.60085 * 23 11 10 52 52 H 1.09002 * 109.39913 * 288.58565 * 25 24 8 53 53 H 1.09003 * 109.39520 * 168.76587 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 7 3.3866 3.5615 1.2511 7 6 2.0542 4.1604 1.3098 8 6 1.6337 4.3515 2.7626 9 6 0.3615 5.2181 2.8365 10 6 -0.7664 4.1626 2.9690 11 7 -0.1562 3.1173 3.8309 12 6 -0.8586 1.8359 3.6816 13 6 -2.2231 1.9192 4.3688 14 6 -2.9550 0.5846 4.2127 15 6 -4.2987 0.6664 4.8901 16 1 -4.6003 1.5788 5.3830 17 6 -5.1430 -0.4236 4.8806 18 7 -4.7756 -1.5348 4.2808 19 14 -6.8083 -0.3224 5.7208 20 1 -7.8238 0.1596 4.7505 21 1 -7.1957 -1.6679 6.2154 22 1 -6.7292 0.6215 6.8644 23 6 1.2531 3.0040 3.3922 24 8 2.6869 4.9640 3.4996 25 6 3.8406 4.1297 3.6365 26 6 4.2208 3.5617 2.2979 27 8 5.3275 3.0848 2.1607 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 3.8340 0.9764 -0.8891 34 1 3.8332 0.9768 0.8908 35 1 3.3499 3.4409 -0.8424 36 1 4.9082 3.0255 -0.0892 37 1 2.0696 5.1275 0.8073 38 1 1.3405 3.5047 0.8112 39 1 0.3872 5.8677 3.7116 40 1 0.2386 5.8021 1.9244 41 1 -1.0260 3.7527 1.9931 42 1 -1.6447 4.5930 3.4501 43 1 -0.9979 1.6191 2.6224 44 1 -0.2687 1.0425 4.1403 45 1 -2.0839 2.1359 5.4278 46 1 -2.8132 2.7125 3.9100 47 1 -3.0943 0.3683 3.1535 48 1 -2.3652 -0.2091 4.6711 49 1 -5.3694 -2.3017 4.2744 50 1 1.3506 2.2075 2.6545 51 1 1.8951 2.7987 4.2487 52 1 3.6186 3.3150 4.3257 53 1 4.6694 4.7195 4.0281 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040993.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:26 Heat of formation + Delta-G solvation = -142.342824 kcal Electronic energy + Delta-G solvation = -32058.242630 eV Core-core repulsion = 27929.107924 eV Total energy + Delta-G solvation = -4129.134707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32408 -40.21985 -39.07674 -38.17872 -36.59803 -35.91941 -34.13425 -32.78532 -32.00788 -30.75032 -29.85763 -28.97518 -27.79706 -26.48491 -24.79348 -24.11172 -23.75339 -22.66973 -22.01888 -21.38944 -19.66395 -18.85597 -18.48134 -18.17860 -17.65581 -17.26641 -17.00018 -16.81429 -16.54355 -16.36885 -16.07295 -15.85974 -15.53447 -15.22679 -14.97458 -14.53485 -14.40471 -14.28853 -14.15136 -14.04106 -13.72992 -13.51305 -13.33667 -13.23720 -12.97911 -12.92464 -12.87718 -12.66819 -12.59280 -12.45023 -12.33027 -12.25509 -12.17327 -12.10037 -11.80279 -11.50510 -11.39587 -11.33319 -11.06921 -10.70597 -10.53779 -10.43617 -9.88661 -9.39454 -8.18974 -6.29441 1.32054 1.40851 1.42009 1.53276 1.71163 2.41740 2.49806 2.63788 2.89701 3.14336 3.20823 3.39534 3.58400 3.65336 3.94869 4.02019 4.06450 4.09682 4.15698 4.17787 4.20820 4.26016 4.33615 4.37492 4.41184 4.42828 4.49248 4.52730 4.56282 4.61034 4.69291 4.70802 4.75396 4.84552 4.89535 4.94329 4.95778 4.97881 5.08015 5.11222 5.24698 5.26099 5.26947 5.53651 5.73843 5.81406 5.87071 5.92172 6.01311 6.11642 6.24570 6.28356 6.86664 6.87059 7.39645 8.92771 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.002892 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.165816 B = 9679.492112 C =10980.366355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.397 6.397 4 C 0.048 3.952 5 C 0.112 3.888 6 N -0.593 5.593 7 C 0.101 3.899 8 C 0.096 3.904 9 C -0.094 4.094 10 C 0.032 3.968 11 N -0.519 5.519 12 C 0.064 3.936 13 C -0.086 4.086 14 C 0.028 3.972 15 C -0.541 4.541 16 H 0.059 0.941 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.015 3.985 24 O -0.357 6.357 25 C 0.046 3.954 26 C 0.485 3.515 27 O -0.580 6.580 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.033 0.967 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.053 0.947 47 H -0.007 1.007 48 H -0.012 1.012 49 H 0.263 0.737 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.096 0.904 53 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.444 12.852 -11.132 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.317 6.317 4 C -0.030 4.030 5 C -0.010 4.010 6 N -0.325 5.325 7 C -0.022 4.022 8 C 0.055 3.945 9 C -0.132 4.132 10 C -0.096 4.096 11 N -0.243 5.243 12 C -0.064 4.064 13 C -0.124 4.124 14 C -0.009 4.009 15 C -0.579 4.579 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.113 4.113 24 O -0.275 6.275 25 C -0.033 4.033 26 C 0.273 3.727 27 O -0.462 6.462 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.011 0.989 48 H 0.006 0.994 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.095 0.905 52 H 0.114 0.886 53 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.775 12.930 -10.609 24.406 hybrid contribution -0.642 -1.615 -0.356 1.775 sum 17.132 11.314 -10.965 23.276 Atomic orbital electron populations 1.21740 0.93781 1.02822 1.02397 1.22470 0.95291 0.83334 1.00421 1.87834 1.21198 1.27127 1.95509 1.22945 0.81453 0.97652 1.00927 1.21721 1.01782 0.91271 0.86246 1.47530 1.16036 1.56433 1.12485 1.22295 0.83294 1.00178 0.96384 1.22303 0.89148 0.93150 0.89876 1.22466 0.88711 0.96760 1.05265 1.23393 0.98236 0.92171 0.95752 1.64811 1.01272 1.06892 1.51349 1.22157 0.95124 0.90802 0.98287 1.21323 0.93728 0.97796 0.99527 1.18950 0.94188 0.92856 0.94955 1.21681 1.02486 0.98824 1.34901 0.92312 1.25954 1.02595 0.95009 0.96188 1.70091 1.38411 1.03685 1.45104 0.85479 0.79246 0.77525 0.79015 1.19629 1.20838 1.18848 1.23432 0.91535 0.97055 0.99316 1.88098 1.23909 1.40689 1.74814 1.22925 0.90268 0.97445 0.92623 1.21312 0.84488 0.79128 0.87737 1.90706 1.22326 1.48888 1.84253 0.90574 0.93826 0.91263 0.91603 0.94349 0.90182 0.94959 0.87247 0.88071 0.88307 0.88519 0.88798 0.86978 0.93008 0.89266 0.94893 0.92586 0.93296 0.92814 0.98896 0.99396 0.92831 0.93278 0.90513 0.88635 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.06 1.23 6.66 71.98 0.48 1.71 16 3 O -0.40 -8.17 8.92 -148.98 -1.33 -9.50 16 4 C 0.05 0.84 6.28 71.98 0.45 1.29 16 5 C 0.11 1.79 5.74 86.38 0.50 2.29 16 6 N -0.59 -11.26 2.77 -825.55 -2.29 -13.55 16 7 C 0.10 1.68 4.96 86.25 0.43 2.11 16 8 C 0.10 1.85 0.96 -10.43 -0.01 1.84 16 9 C -0.09 -1.62 6.34 31.67 0.20 -1.42 16 10 C 0.03 0.73 5.92 86.68 0.51 1.25 16 11 N -0.52 -14.75 5.25 -883.27 -4.64 -19.39 16 12 C 0.06 2.22 4.71 86.30 0.41 2.62 16 13 C -0.09 -3.55 5.24 30.59 0.16 -3.39 16 14 C 0.03 1.48 4.97 29.85 0.15 1.63 16 15 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 19 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 23 C 0.01 0.37 5.41 86.26 0.47 0.83 16 24 O -0.36 -7.21 10.33 -148.98 -1.54 -8.75 16 25 C 0.05 0.87 6.43 71.11 0.46 1.33 16 26 C 0.48 10.90 7.43 87.67 0.65 11.55 16 27 O -0.58 -16.46 16.34 -3.05 -0.05 -16.51 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.17 7.20 -2.39 -0.02 1.15 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 1.28 8.04 -2.39 -0.02 1.26 16 36 H 0.10 1.69 7.22 -2.38 -0.02 1.67 16 37 H 0.10 1.24 7.93 -2.39 -0.02 1.22 16 38 H 0.10 1.75 6.67 -2.39 -0.02 1.73 16 39 H 0.09 1.69 8.07 -2.38 -0.02 1.67 16 40 H 0.11 1.30 7.69 -2.39 -0.02 1.28 16 41 H 0.05 1.17 7.81 -2.39 -0.02 1.16 16 42 H 0.09 2.11 7.81 -2.39 -0.02 2.09 16 43 H 0.03 1.13 6.89 -2.38 -0.02 1.12 16 44 H 0.06 2.02 8.08 -2.39 -0.02 2.01 16 45 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 2.14 7.37 -2.39 -0.02 2.12 16 47 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 49 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 50 H 0.05 1.31 7.23 -2.39 -0.02 1.29 16 51 H 0.08 1.96 6.08 -2.39 -0.01 1.94 16 52 H 0.10 1.78 6.48 -2.39 -0.02 1.77 16 53 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -70.09 411.70 -0.38 -70.48 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.87 Total: 16.45 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 6.28 Total: -9.19 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -6.64 Total: -89.25 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -2.92 Total: -34.75 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.09 -0.38 -70.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040993.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.867 kcal (2) G-P(sol) polarization free energy of solvation -70.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds