Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46638 * 2 1 4 4 C 1.42902 * 113.99697 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47322 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46965 * 54.99947 * 5 4 3 7 7 O 1.42905 * 109.47377 * 295.00608 * 5 4 3 8 8 C 1.52997 * 109.47573 * 175.00187 * 5 4 3 9 9 N 1.46896 * 109.47545 * 185.00346 * 8 5 4 10 10 C 1.48625 * 110.99865 * 287.45163 * 9 8 5 11 11 C 1.55164 * 103.35955 * 200.85197 * 10 9 8 12 12 C 1.53612 * 102.65806 * 36.58509 * 11 10 9 13 13 C 1.53634 * 110.82468 * 99.45566 * 12 11 10 14 14 C 1.54880 * 101.43218 * 96.68117 * 13 12 11 15 15 N 1.46880 * 105.42958 * 24.88213 * 14 13 12 16 16 C 1.46500 * 124.37410 * 163.04653 * 15 14 13 17 17 C 1.52997 * 109.47473 * 269.72824 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.34754 * 111.25553 * 342.78590 * 15 14 13 27 27 O 1.21285 * 125.13533 * 181.28276 * 26 15 14 28 28 C 1.48184 * 111.00154 * 170.00026 * 9 8 5 29 29 H 1.08997 * 109.47145 * 299.99604 * 1 2 3 30 30 H 1.09003 * 109.47134 * 59.99867 * 1 2 3 31 31 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47145 * 240.00396 * 2 1 3 33 33 H 1.08996 * 109.47428 * 119.99875 * 2 1 3 34 34 H 1.09006 * 109.47276 * 60.00469 * 4 3 2 35 35 H 1.09002 * 109.47666 * 300.00565 * 4 3 2 36 36 H 0.96700 * 113.99587 * 299.99970 * 7 5 4 37 37 H 1.09004 * 109.47055 * 65.00194 * 8 5 4 38 38 H 1.09001 * 109.46999 * 305.00739 * 8 5 4 39 39 H 1.09001 * 110.64152 * 319.32254 * 10 9 8 40 40 H 1.09002 * 110.64194 * 82.22425 * 10 9 8 41 41 H 1.08993 * 110.77434 * 278.29590 * 11 10 9 42 42 H 1.09000 * 110.77321 * 154.87992 * 11 10 9 43 43 H 1.08998 * 111.01883 * 214.95100 * 13 12 11 44 44 H 1.08997 * 111.02252 * 338.84395 * 13 12 11 45 45 H 1.08997 * 110.39509 * 265.84579 * 14 13 12 46 46 H 1.09000 * 110.17573 * 143.80788 * 14 13 12 47 47 H 1.09002 * 109.47129 * 149.72567 * 16 15 14 48 48 H 1.08998 * 109.46845 * 29.73374 * 16 15 14 49 49 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 50 50 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 51 51 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 52 52 H 1.09001 * 110.02174 * 26.33676 * 28 9 8 53 53 H 1.09001 * 110.05914 * 264.95918 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 1 3.3491 3.4420 0.8412 7 8 3.3985 3.5449 -1.2217 8 6 5.3452 3.0609 0.1262 9 7 5.7141 4.4777 0.2460 10 6 5.5490 5.1826 -1.0520 11 6 6.4560 6.4323 -0.8992 12 6 7.6459 5.8882 -0.0943 13 6 8.8325 5.5744 -1.0183 14 6 9.6804 6.8628 -0.8775 15 7 9.3172 7.4289 0.4282 16 6 10.1061 8.4365 1.1413 17 6 11.1171 7.7403 2.0546 18 6 11.9290 8.7769 2.7876 19 1 11.7424 9.8273 2.6192 20 6 12.9095 8.3844 3.6739 21 7 13.1364 7.1054 3.8793 22 14 13.9154 9.6693 4.5830 23 1 13.2432 10.0100 5.8625 24 1 15.2701 9.1297 4.8640 25 1 14.0328 10.8898 3.7453 26 6 8.1616 6.9058 0.8831 27 8 7.6194 7.2108 1.9242 28 6 7.1434 4.6255 0.6083 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8340 0.9766 -0.8892 35 1 3.8333 0.9767 0.8907 36 1 3.7836 3.1464 -2.0141 37 1 5.8187 2.6357 -0.7588 38 1 5.6807 2.5218 1.0122 39 1 5.8926 4.5568 -1.8756 40 1 4.5096 5.4751 -1.2009 41 1 5.9418 7.2178 -0.3456 42 1 6.7820 6.7949 -1.8740 43 1 9.3810 4.7004 -0.6671 44 1 8.5012 5.4383 -2.0478 45 1 9.4376 7.5662 -1.6740 46 1 10.7424 6.6184 -0.9002 47 1 9.4428 9.0593 1.7415 48 1 10.6361 9.0596 0.4208 49 1 11.7803 7.1175 1.4543 50 1 10.5870 7.1173 2.7750 51 1 13.8265 6.8293 4.5027 52 1 7.7070 3.7580 0.2649 53 1 7.2461 4.7334 1.6881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274564472.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -157.120604 kcal Electronic energy + Delta-G solvation = -30297.979332 eV Core-core repulsion = 26168.203812 eV Total energy + Delta-G solvation = -4129.775519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13410 -39.97689 -38.89397 -37.59497 -37.30323 -35.67976 -34.18764 -32.76737 -32.04900 -30.60236 -30.10600 -29.13073 -27.07873 -26.09749 -24.32337 -23.68751 -23.57647 -22.83110 -22.10308 -21.48122 -19.93488 -18.70661 -18.12377 -17.69669 -17.33744 -17.24917 -16.99992 -16.68012 -16.30131 -16.21190 -16.00124 -15.84157 -15.31649 -15.08374 -14.67497 -14.56913 -14.41394 -14.29420 -14.08227 -13.75507 -13.57218 -13.48841 -13.31387 -13.19296 -12.95222 -12.90196 -12.81898 -12.68333 -12.55720 -12.28675 -12.24760 -12.18559 -12.02825 -11.98654 -11.79421 -11.69087 -11.54030 -11.41693 -10.82558 -10.66040 -10.59065 -10.56319 -9.56361 -9.31659 -8.25538 -6.38495 1.37853 1.40610 1.51069 1.57157 2.14406 2.40066 2.48601 3.07980 3.09802 3.21489 3.43394 3.52587 3.59781 3.91266 3.98452 4.06508 4.07186 4.14091 4.16573 4.26291 4.29950 4.33849 4.36305 4.39792 4.47172 4.49774 4.50989 4.59304 4.62701 4.68479 4.73370 4.81260 4.86097 4.86893 4.91174 4.97278 5.01739 5.08061 5.11119 5.19505 5.23665 5.26729 5.31698 5.44874 5.58592 5.80596 5.89287 6.09114 6.13785 6.27877 6.30356 6.76623 6.91156 7.23269 7.31514 8.86625 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.001886 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.935545 B =14842.794156 C =15491.974043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.035 3.965 5 C 0.124 3.876 6 H 0.083 0.917 7 O -0.561 6.561 8 C 0.023 3.977 9 N -0.533 5.533 10 C 0.053 3.947 11 C -0.099 4.099 12 C -0.099 4.099 13 C -0.107 4.107 14 C 0.093 3.907 15 N -0.621 5.621 16 C 0.141 3.859 17 C 0.025 3.975 18 C -0.547 4.547 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.971 3.029 23 H -0.278 1.278 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.509 3.491 27 O -0.585 6.585 28 C 0.064 3.936 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.383 0.617 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.135 0.865 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.092 0.908 49 H 0.003 0.997 50 H -0.029 1.029 51 H 0.265 0.735 52 H 0.078 0.922 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.281 -15.766 -19.290 30.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.328 6.328 4 C -0.042 4.042 5 C 0.064 3.936 6 H 0.101 0.899 7 O -0.368 6.368 8 C -0.106 4.106 9 N -0.258 5.258 10 C -0.074 4.074 11 C -0.137 4.137 12 C -0.103 4.103 13 C -0.144 4.144 14 C -0.029 4.029 15 N -0.352 5.352 16 C 0.020 3.980 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.795 3.205 23 H -0.203 1.203 24 H -0.203 1.203 25 H -0.181 1.181 26 C 0.298 3.702 27 O -0.465 6.465 28 C -0.064 4.064 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.153 0.847 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.021 0.979 50 H -0.011 1.011 51 H 0.073 0.927 52 H 0.096 0.904 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.188 -14.916 -17.834 30.145 hybrid contribution 1.737 -0.315 0.660 1.884 sum -17.451 -15.231 -17.175 28.836 Atomic orbital electron populations 1.21769 0.93361 1.03254 1.02481 1.22655 0.96133 0.82956 1.00896 1.87936 1.21436 1.27820 1.95585 1.23217 0.81662 0.97171 1.02192 1.21691 0.92579 0.91232 0.88103 0.89910 1.86665 1.72929 1.61389 1.15772 1.22872 0.95660 0.89104 1.02959 1.64665 1.18196 1.12699 1.30218 1.23379 1.00715 0.93499 0.89787 1.22432 0.93063 0.98312 0.99903 1.21512 0.98414 0.94705 0.95652 1.22834 0.93084 0.96928 1.01603 1.22487 1.00905 0.95951 0.83519 1.48767 1.22955 1.41594 1.21914 1.21348 0.92409 0.89507 0.94784 1.19200 0.93110 0.95448 0.93544 1.21559 1.18315 0.93712 1.24955 0.91576 1.26019 0.98499 0.97650 0.97546 1.70113 1.33525 1.16837 1.36682 0.85360 0.77513 0.78986 0.78656 1.20340 1.20341 1.18065 1.21215 0.80588 0.82575 0.85823 1.90655 1.63323 1.65594 1.26949 1.22560 0.89088 0.95419 0.99361 0.92789 0.92389 0.89137 0.92162 0.92794 0.90868 0.91700 0.76774 0.91170 0.89791 0.90547 0.88875 0.93395 0.86929 0.89600 0.84699 0.88240 0.90268 0.93331 0.88984 0.97873 1.01101 0.92673 0.90416 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.41 -7.39 10.31 -144.35 -1.49 -8.88 16 4 C 0.03 0.45 5.57 71.98 0.40 0.85 16 5 C 0.12 2.02 3.46 30.59 0.11 2.13 16 6 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 7 O -0.56 -9.07 10.68 -144.35 -1.54 -10.61 16 8 C 0.02 0.34 4.53 86.30 0.39 0.73 16 9 N -0.53 -11.92 5.26 -883.55 -4.64 -16.56 16 10 C 0.05 0.92 5.33 86.71 0.46 1.38 16 11 C -0.10 -2.09 6.11 31.54 0.19 -1.90 16 12 C -0.10 -2.56 0.77 -52.66 -0.04 -2.60 16 13 C -0.11 -1.94 6.08 31.45 0.19 -1.75 16 14 C 0.09 2.23 7.37 86.95 0.64 2.88 16 15 N -0.62 -23.02 2.94 -817.82 -2.41 -25.43 16 16 C 0.14 6.26 5.89 86.38 0.51 6.77 16 17 C 0.02 1.39 5.30 29.85 0.16 1.54 16 18 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 19 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 20 C 0.00 0.06 5.46 84.66 0.46 0.52 16 21 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 22 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 C 0.51 20.13 6.63 87.51 0.58 20.71 16 27 O -0.58 -29.75 17.17 -3.05 -0.05 -29.80 16 28 C 0.06 1.65 5.97 86.05 0.51 2.17 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.38 2.95 9.05 -74.06 -0.67 2.28 16 37 H 0.07 0.68 7.83 -2.39 -0.02 0.66 16 38 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 39 H 0.08 0.82 7.80 -2.39 -0.02 0.80 16 40 H 0.09 1.80 6.82 -2.39 -0.02 1.78 16 41 H 0.05 1.34 7.92 -2.39 -0.02 1.32 16 42 H 0.11 1.59 7.64 -2.39 -0.02 1.57 16 43 H 0.09 1.55 7.62 -2.39 -0.02 1.54 16 44 H 0.13 1.23 7.67 -2.39 -0.02 1.21 16 45 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 47 H 0.05 2.33 7.93 -2.39 -0.02 2.32 16 48 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 49 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 50 H -0.03 -1.90 8.14 -2.39 -0.02 -1.92 16 51 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 52 H 0.08 1.55 7.06 -2.39 -0.02 1.54 16 53 H 0.04 1.58 7.46 -2.39 -0.02 1.56 16 Total: -1.00 -85.04 419.81 -1.60 -86.64 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.21 Total: 13.52 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.02 Total: 1.82 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -6.77 Total: -99.75 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -3.08 Total: -49.29 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -85.04 -1.60 -86.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274564472.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.486 kcal (2) G-P(sol) polarization free energy of solvation -85.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds