Wall clock time and date at job start Sat Apr 11 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47033 * 2 1 4 4 C 1.42898 * 114.00216 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47508 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46716 * 54.99769 * 5 4 3 7 7 O 1.42899 * 109.47096 * 295.00323 * 5 4 3 8 8 C 1.52996 * 109.47618 * 174.99871 * 5 4 3 9 9 N 1.46890 * 109.47388 * 185.00250 * 8 5 4 10 10 C 1.48726 * 111.00215 * 52.84521 * 9 8 5 11 11 C 1.55002 * 103.35304 * 158.81664 * 10 9 8 12 12 C 1.54795 * 102.94202 * 323.04274 * 11 10 9 13 13 C 1.47082 * 111.00106 * 170.00287 * 9 8 5 14 14 C 1.54035 * 110.85858 * 93.71860 * 13 9 8 15 15 C 1.54648 * 101.50173 * 264.09544 * 14 13 9 16 16 N 1.46853 * 105.50543 * 335.02988 * 15 14 13 17 17 C 1.46507 * 124.36907 * 196.84657 * 16 15 14 18 18 C 1.52997 * 109.47235 * 270.02535 * 17 16 15 19 19 C 1.50692 * 109.47049 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00367 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99987 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99735 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00158 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46850 * 59.99916 * 23 21 19 25 25 H 1.48497 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46765 * 300.00033 * 23 21 19 27 27 C 1.34668 * 111.26435 * 16.86759 * 16 15 14 28 28 O 1.21283 * 125.07831 * 179.14127 * 27 16 15 29 29 H 1.08992 * 109.47339 * 300.00070 * 1 2 3 30 30 H 1.09003 * 109.46551 * 60.00603 * 1 2 3 31 31 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47339 * 239.99930 * 2 1 3 33 33 H 1.08998 * 109.47210 * 119.99206 * 2 1 3 34 34 H 1.08999 * 109.46940 * 59.99859 * 4 3 2 35 35 H 1.09006 * 109.47216 * 299.99728 * 4 3 2 36 36 H 0.96700 * 113.99475 * 299.99836 * 7 5 4 37 37 H 1.09006 * 109.46958 * 64.99850 * 8 5 4 38 38 H 1.09000 * 109.46941 * 305.00814 * 8 5 4 39 39 H 1.08997 * 110.64374 * 40.34365 * 10 9 8 40 40 H 1.09001 * 110.78320 * 277.34656 * 10 9 8 41 41 H 1.09009 * 110.71642 * 204.68054 * 11 10 9 42 42 H 1.08999 * 110.87241 * 81.47887 * 11 10 9 43 43 H 1.09011 * 110.37042 * 263.06280 * 12 11 10 44 44 H 1.09004 * 110.37033 * 140.73509 * 12 11 10 45 45 H 1.09000 * 111.23589 * 145.96877 * 14 13 9 46 46 H 1.09001 * 110.88242 * 22.07392 * 14 13 9 47 47 H 1.09001 * 110.24141 * 216.02300 * 15 14 13 48 48 H 1.08996 * 110.23985 * 94.03549 * 15 14 13 49 49 H 1.09003 * 109.46387 * 30.02433 * 17 16 15 50 50 H 1.08993 * 109.46698 * 150.02113 * 17 16 15 51 51 H 1.09002 * 109.47121 * 300.00058 * 18 17 16 52 52 H 1.09003 * 109.47211 * 59.99730 * 18 17 16 53 53 H 0.97007 * 120.00044 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9385 -0.0001 6 1 3.3491 3.4420 0.8412 7 8 3.3986 3.5448 -1.2217 8 6 5.3452 3.0609 0.1263 9 7 5.7141 4.4777 0.2460 10 6 4.9530 5.1359 1.3412 11 6 5.8179 6.3759 1.6831 12 6 7.2632 5.8456 1.5222 13 6 7.1327 4.6244 0.6057 14 6 8.0026 4.7985 -0.6536 15 6 8.4802 3.3487 -0.9013 16 7 8.4211 2.6867 0.4082 17 6 9.1020 1.4304 0.7314 18 6 8.1767 0.2532 0.4168 19 6 8.8774 -1.0390 0.7486 20 1 9.8819 -1.0224 1.1447 21 6 8.2355 -2.2426 0.5476 22 7 7.0116 -2.2628 0.0667 23 14 9.1037 -3.8445 0.9595 24 1 9.4533 -3.8610 2.4027 25 1 8.2052 -4.9870 0.6553 26 1 10.3425 -3.9587 0.1487 27 6 7.6598 3.3832 1.2736 28 8 7.4293 3.0562 2.4186 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8340 0.9765 -0.8891 35 1 3.8333 0.9768 0.8909 36 1 3.7837 3.1463 -2.0141 37 1 5.8188 2.6356 -0.7587 38 1 5.6807 2.5219 1.0123 39 1 4.8713 4.4746 2.2038 40 1 3.9646 5.4400 0.9968 41 1 5.6381 6.7007 2.7080 42 1 5.6252 7.1888 0.9830 43 1 7.6696 5.5518 2.4901 44 1 7.8957 6.6024 1.0581 45 1 8.8469 5.4606 -0.4617 46 1 7.4062 5.1618 -1.4906 47 1 9.5029 3.3478 -1.2784 48 1 7.8169 2.8485 -1.6069 49 1 10.0115 1.3467 0.1364 50 1 9.3583 1.4182 1.7907 51 1 7.2672 0.3369 1.0116 52 1 7.9204 0.2655 -0.6426 53 1 6.5601 -3.1096 -0.0751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274566840.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:46 Heat of formation + Delta-G solvation = -151.467240 kcal Electronic energy + Delta-G solvation = -32407.011781 eV Core-core repulsion = 28277.481410 eV Total energy + Delta-G solvation = -4129.530371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.53883 -39.81356 -38.78416 -37.60736 -37.48237 -35.59258 -33.84652 -33.39732 -32.48492 -30.78851 -30.13172 -28.89659 -27.00037 -26.23173 -24.57818 -23.83013 -23.71093 -23.16597 -21.78212 -21.47654 -19.92354 -18.74703 -18.34431 -17.74299 -17.63727 -17.19911 -17.14223 -16.74865 -16.61526 -16.21767 -16.12191 -15.77066 -15.44143 -15.15094 -14.81199 -14.54411 -14.33888 -14.23484 -14.19342 -13.85249 -13.79466 -13.50853 -13.41627 -13.17896 -13.11744 -12.88090 -12.86518 -12.67632 -12.42481 -12.37873 -12.30737 -12.14275 -12.05724 -11.96856 -11.87238 -11.60139 -11.57949 -11.44458 -11.09478 -10.98625 -10.75620 -10.62969 -9.65835 -9.53230 -8.27574 -6.39644 1.35727 1.39013 1.42932 1.46778 2.06300 2.28256 2.37511 2.87626 3.06234 3.26785 3.34427 3.41387 3.62178 3.71126 3.84083 3.90503 3.99172 4.03799 4.09312 4.12688 4.21131 4.25477 4.27868 4.31037 4.35353 4.40703 4.48850 4.54897 4.58345 4.68892 4.73126 4.78570 4.81557 4.86116 4.87003 4.95094 4.96444 5.05407 5.13330 5.16138 5.18595 5.24637 5.28759 5.40912 5.54315 5.69015 5.73350 5.77855 6.04462 6.11191 6.21933 6.73932 6.74198 7.12526 7.29924 8.83716 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006942 B = 0.004987 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4032.543687 B = 5613.313347 C = 8870.558639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 O -0.390 6.390 4 C 0.036 3.964 5 C 0.136 3.864 6 H 0.101 0.899 7 O -0.543 6.543 8 C 0.018 3.982 9 N -0.456 5.456 10 C 0.022 3.978 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.057 3.943 14 C -0.099 4.099 15 C 0.090 3.910 16 N -0.614 5.614 17 C 0.139 3.861 18 C 0.032 3.968 19 C -0.547 4.547 20 H 0.064 0.936 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C 0.491 3.509 28 O -0.585 6.585 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.385 0.615 37 H 0.082 0.918 38 H 0.018 0.982 39 H 0.023 0.977 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.103 0.897 48 H 0.065 0.935 49 H 0.092 0.908 50 H 0.048 0.952 51 H -0.029 1.029 52 H 0.001 0.999 53 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 16.496 -4.913 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 O -0.310 6.310 4 C -0.042 4.042 5 C 0.076 3.924 6 H 0.119 0.881 7 O -0.349 6.349 8 C -0.111 4.111 9 N -0.180 5.180 10 C -0.106 4.106 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.037 4.037 14 C -0.136 4.136 15 C -0.032 4.032 16 N -0.345 5.345 17 C 0.018 3.982 18 C -0.006 4.006 19 C -0.586 4.586 20 H 0.082 0.918 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.789 3.211 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.184 1.184 27 C 0.278 3.722 28 O -0.465 6.465 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.234 0.766 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.041 0.959 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.140 0.860 47 H 0.121 0.879 48 H 0.083 0.917 49 H 0.110 0.890 50 H 0.067 0.933 51 H -0.011 1.011 52 H 0.019 0.981 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.214 16.899 -4.489 18.246 hybrid contribution 0.928 -2.984 1.060 3.300 sum -4.286 13.915 -3.429 14.959 Atomic orbital electron populations 1.21719 0.91410 1.03545 1.03134 1.22710 0.97326 0.82953 1.00197 1.87848 1.20049 1.27634 1.95469 1.23111 0.82180 0.98329 1.00555 1.21565 0.91294 0.90236 0.89337 0.88129 1.86546 1.72089 1.61136 1.15143 1.22887 0.96733 0.90347 1.01140 1.65060 1.00820 1.11249 1.40858 1.23491 0.99417 0.95956 0.91690 1.22505 0.92299 0.96774 1.03021 1.22373 0.99517 0.94857 0.98126 1.22387 0.90772 0.93228 0.97271 1.22763 0.99265 0.94832 0.96773 1.22485 1.03734 0.93453 0.83543 1.48762 1.48711 1.23068 1.13998 1.21407 0.95537 0.81542 0.99753 1.19124 0.93893 0.92778 0.94848 1.21488 1.01484 0.91925 1.43659 0.91813 1.25917 0.95548 1.03109 0.94623 1.70083 1.13485 1.27342 1.45720 0.85511 0.78702 0.77981 0.78945 1.19774 1.20756 1.18437 1.21889 0.77976 0.87138 0.85227 1.90656 1.61273 1.74651 1.19901 0.91940 0.91467 0.89104 0.93166 0.94176 0.92694 0.94752 0.76598 0.90003 0.96348 0.95878 0.88204 0.89959 0.87930 0.92834 0.86675 0.86770 0.86044 0.87870 0.91662 0.89021 0.93297 1.01064 0.98075 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 10.28 71.98 0.74 -2.25 16 2 C 0.04 1.25 6.66 71.98 0.48 1.73 16 3 O -0.39 -12.76 10.31 -144.35 -1.49 -14.24 16 4 C 0.04 1.22 5.57 71.98 0.40 1.62 16 5 C 0.14 4.12 2.98 30.59 0.09 4.21 16 6 H 0.10 3.13 6.53 -2.39 -0.02 3.12 16 7 O -0.54 -14.75 13.25 -144.35 -1.91 -16.66 16 8 C 0.02 0.58 3.86 86.30 0.33 0.91 16 9 N -0.46 -12.22 4.98 -839.44 -4.18 -16.40 16 10 C 0.02 0.55 5.09 86.63 0.44 0.99 16 11 C -0.11 -2.05 7.07 31.89 0.23 -1.82 16 12 C -0.11 -2.37 6.18 31.29 0.19 -2.18 16 13 C 0.06 1.49 0.80 3.11 0.00 1.50 16 14 C -0.10 -1.84 6.33 31.51 0.20 -1.64 16 15 C 0.09 2.21 6.84 86.87 0.59 2.81 16 16 N -0.61 -21.96 2.93 -818.12 -2.39 -24.35 16 17 C 0.14 5.95 5.88 86.38 0.51 6.46 16 18 C 0.03 1.68 5.30 29.84 0.16 1.84 16 19 C -0.55 -31.09 9.11 25.60 0.23 -30.86 16 20 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.01 0.38 5.46 84.66 0.46 0.85 16 22 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 23 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 C 0.49 18.41 4.46 87.61 0.39 18.80 16 28 O -0.58 -27.82 16.57 -3.04 -0.05 -27.87 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.39 8.18 9.04 -74.06 -0.67 7.51 16 37 H 0.08 2.70 7.05 -2.38 -0.02 2.68 16 38 H 0.02 0.78 5.91 -2.39 -0.01 0.77 16 39 H 0.02 0.71 7.99 -2.39 -0.02 0.69 16 40 H 0.10 2.32 7.61 -2.39 -0.02 2.30 16 41 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.42 7.44 -2.38 -0.02 1.40 16 44 H 0.11 1.65 7.41 -2.38 -0.02 1.64 16 45 H 0.11 1.50 7.59 -2.39 -0.02 1.48 16 46 H 0.12 1.84 8.07 -2.39 -0.02 1.82 16 47 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.07 1.69 7.44 -2.39 -0.02 1.67 16 49 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 50 H 0.05 2.27 7.94 -2.39 -0.02 2.25 16 51 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 52 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 53 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -76.56 415.98 -2.05 -78.61 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.21 Total: 27.35 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.45 Total: 2.98 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -6.29 Total: -96.23 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -3.45 Total: -58.78 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -76.56 -2.05 -78.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274566840.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.856 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds