Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99971 * 2 1 4 4 C 1.50699 * 119.99846 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.47103 * 5.00074 * 4 2 1 6 6 C 1.52997 * 109.47078 * 244.99943 * 4 2 1 7 7 C 1.50708 * 109.46993 * 175.00050 * 6 4 2 8 8 O 1.21278 * 120.00093 * 0.02562 * 7 6 4 9 9 N 1.34771 * 119.99670 * 180.02562 * 7 6 4 10 10 C 1.46924 * 120.63404 * 359.72138 * 9 7 6 11 11 C 1.52764 * 109.00950 * 233.58389 * 10 9 7 12 12 C 1.53040 * 109.38003 * 305.58746 * 11 10 9 13 13 O 1.42897 * 109.45312 * 301.22266 * 12 11 10 14 14 C 1.53005 * 109.45937 * 181.25794 * 12 11 10 15 15 N 1.46508 * 109.46825 * 59.93103 * 14 12 11 16 16 C 1.36936 * 119.99500 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00578 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99421 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99924 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47210 * 90.00271 * 20 18 16 22 22 H 1.48508 * 109.47199 * 210.00035 * 20 18 16 23 23 H 1.48498 * 109.47442 * 330.00099 * 20 18 16 24 24 C 1.53047 * 109.54167 * 61.24104 * 12 11 10 25 25 C 1.46933 * 120.62625 * 180.02562 * 9 7 6 26 26 O 1.42905 * 109.46972 * 124.99888 * 4 2 1 27 27 C 1.42900 * 113.99924 * 269.99954 * 26 4 2 28 28 C 1.53000 * 109.46558 * 180.02562 * 27 26 4 29 29 H 1.07998 * 119.99970 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00021 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46961 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46948 * 299.99504 * 3 2 1 33 33 H 1.09001 * 109.47211 * 60.00010 * 3 2 1 34 34 H 1.08998 * 109.47192 * 294.99945 * 6 4 2 35 35 H 1.09000 * 109.46875 * 55.00348 * 6 4 2 36 36 H 1.09001 * 109.58633 * 353.41495 * 10 9 7 37 37 H 1.08998 * 109.58859 * 113.84676 * 10 9 7 38 38 H 1.08999 * 109.56383 * 185.55180 * 11 10 9 39 39 H 1.09000 * 109.36043 * 65.49563 * 11 10 9 40 40 H 0.96703 * 113.99892 * 300.06777 * 13 12 11 41 41 H 1.09003 * 109.47509 * 179.97438 * 14 12 11 42 42 H 1.08997 * 109.47219 * 299.93527 * 14 12 11 43 43 H 0.96991 * 120.00004 * 0.02562 * 15 14 12 44 44 H 0.96998 * 119.99897 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.49620 * 178.68187 * 24 12 11 46 46 H 1.08998 * 109.49455 * 58.58085 * 24 12 11 47 47 H 1.09004 * 109.58201 * 246.15573 * 25 9 7 48 48 H 1.08996 * 109.58695 * 6.58245 * 25 9 7 49 49 H 1.08998 * 109.46882 * 299.99937 * 27 26 4 50 50 H 1.08995 * 109.47077 * 60.00255 * 27 26 4 51 51 H 1.08995 * 109.47421 * 60.00218 * 28 27 26 52 52 H 1.09007 * 109.46927 * 180.02562 * 28 27 26 53 53 H 1.08998 * 109.47270 * 299.99451 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1317 -0.0886 6 6 2.8464 -1.4414 1.3080 7 6 3.5008 -2.7979 1.3625 8 8 3.3557 -3.5785 0.4458 9 7 4.2473 -3.1434 2.4301 10 6 4.4374 -2.2063 3.5456 11 6 5.9334 -2.0386 3.8052 12 6 6.5682 -3.4139 4.0240 13 8 5.9367 -4.0586 5.1319 14 6 8.0608 -3.2458 4.3153 15 7 8.2345 -2.4289 5.5190 16 6 9.4931 -2.1424 5.9762 17 1 10.3576 -2.5188 5.4497 18 6 9.6576 -1.3689 7.1170 19 7 10.8674 -1.0930 7.5562 20 14 8.1623 -0.7184 8.0281 21 1 7.7427 -1.7031 9.0575 22 1 8.5041 0.5690 8.6848 23 1 7.0513 -0.5038 7.0664 24 6 6.3871 -4.2672 2.7665 25 6 4.8920 -4.4620 2.4974 26 8 2.9709 -1.3317 -1.1031 27 6 2.4138 -1.8776 -2.3005 28 6 3.4682 -1.8570 -3.4089 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 3.1352 1.1059 -0.0005 32 1 1.8002 1.8766 -0.8901 33 1 1.8002 1.8767 0.8900 34 1 3.6116 -0.6667 1.3557 35 1 2.1656 -1.3322 2.1522 36 1 4.0019 -1.2404 3.2897 37 1 3.9561 -2.6009 4.4404 38 1 6.0832 -1.4234 4.6924 39 1 6.3976 -1.5564 2.9449 40 1 6.0117 -3.5728 5.9647 41 1 8.5131 -4.2252 4.4716 42 1 8.5428 -2.7544 3.4701 43 1 7.4581 -2.0912 5.9921 44 1 10.9823 -0.5522 8.3532 45 1 6.8597 -5.2381 2.9146 46 1 6.8470 -3.7639 1.9161 47 1 4.4486 -5.0447 3.3049 48 1 4.7564 -4.9839 1.5502 49 1 2.0980 -2.9049 -2.1188 50 1 1.5537 -1.2816 -2.6056 51 1 4.3281 -2.4532 -3.1036 52 1 3.0432 -2.2730 -4.3225 53 1 3.7844 -0.8299 -3.5907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281613214.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -126.058375 kcal Electronic energy + Delta-G solvation = -31299.596132 eV Core-core repulsion = 27171.167572 eV Total energy + Delta-G solvation = -4128.428560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54237 -40.16685 -39.08504 -36.84053 -36.10464 -35.84108 -33.68586 -33.20718 -32.33990 -31.97851 -30.86498 -28.53999 -28.21596 -25.85008 -24.67219 -24.42699 -23.65843 -22.99218 -21.49539 -20.02739 -19.98397 -19.79668 -18.14349 -17.83052 -17.31306 -17.02670 -16.71738 -16.60460 -16.25151 -16.06650 -15.68176 -15.55575 -15.01804 -14.91668 -14.82329 -14.77232 -14.52236 -14.29492 -14.22037 -13.95746 -13.64947 -13.49627 -13.39855 -13.17382 -13.14401 -12.86125 -12.80827 -12.70901 -12.57201 -12.46499 -12.28594 -12.20297 -12.11222 -11.95728 -11.88008 -11.76925 -11.37528 -11.01954 -10.91162 -10.69883 -10.46293 -10.07740 -9.62370 -9.34822 -8.02918 -5.39117 1.19054 1.36894 1.44947 1.51567 1.65204 2.01396 2.49222 2.79796 3.19538 3.30940 3.41396 3.45970 3.69434 3.81895 3.89601 3.91941 3.95523 4.09207 4.10559 4.20295 4.31566 4.34109 4.37781 4.45190 4.49794 4.52094 4.59631 4.69166 4.72411 4.75008 4.80860 4.83427 4.85258 4.85886 4.92804 4.97849 5.02159 5.03769 5.07344 5.11861 5.17772 5.24295 5.29499 5.53662 5.64264 5.73223 5.81763 6.18494 6.34375 6.43930 6.71382 7.05706 7.18688 7.76829 7.98516 9.18551 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.002633 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.509725 B =10631.739537 C =11319.403963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.157 4.157 3 C -0.113 4.113 4 C 0.141 3.859 5 H 0.061 0.939 6 C -0.132 4.132 7 C 0.515 3.485 8 O -0.575 6.575 9 N -0.609 5.609 10 C 0.115 3.885 11 C -0.158 4.158 12 C 0.137 3.863 13 O -0.558 6.558 14 C 0.131 3.869 15 N -0.747 5.747 16 C -0.240 4.240 17 H 0.049 0.951 18 C -0.066 4.066 19 N -0.986 5.986 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.238 1.238 24 C -0.112 4.112 25 C 0.125 3.875 26 O -0.387 6.387 27 C 0.062 3.938 28 C -0.146 4.146 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.381 0.619 41 H 0.024 0.976 42 H 0.029 0.971 43 H 0.367 0.633 44 H 0.258 0.742 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.038 0.962 50 H 0.054 0.946 51 H 0.047 0.953 52 H 0.087 0.913 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.664 1.821 -16.360 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.083 3.917 5 H 0.079 0.921 6 C -0.172 4.172 7 C 0.304 3.696 8 O -0.454 6.454 9 N -0.342 5.342 10 C -0.008 4.008 11 C -0.196 4.196 12 C 0.096 3.904 13 O -0.365 6.365 14 C 0.005 3.995 15 N -0.395 5.395 16 C -0.370 4.370 17 H 0.067 0.933 18 C -0.257 4.257 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.161 1.161 24 C -0.151 4.151 25 C 0.002 3.998 26 O -0.306 6.306 27 C -0.014 4.014 28 C -0.203 4.203 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.131 0.869 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.230 0.770 41 H 0.042 0.958 42 H 0.047 0.953 43 H 0.202 0.798 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.106 0.894 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.465 1.011 -17.306 30.806 hybrid contribution 0.241 0.593 1.259 1.412 sum -25.224 1.604 -16.048 29.939 Atomic orbital electron populations 1.23920 0.94766 1.02994 0.99580 1.22229 0.95774 0.96072 1.01652 1.20736 0.99985 0.93717 1.02484 1.20798 0.90563 0.94268 0.86054 0.92115 1.21897 1.01855 0.94375 0.99047 1.20990 0.78389 0.89528 0.80656 1.90651 1.62929 1.54222 1.37624 1.48195 1.49715 1.16542 1.19704 1.21745 0.95400 0.94054 0.89561 1.22452 0.96621 0.97046 1.03492 1.21247 0.89559 0.92240 0.87402 1.86432 1.78246 1.52076 1.19784 1.21425 0.95641 0.93824 0.88653 1.42481 1.03608 1.62822 1.30588 1.18955 0.85081 1.25947 1.07065 0.93284 1.25632 0.99701 1.00994 0.99392 1.69910 1.22883 1.44425 1.26356 0.85369 0.79716 0.77379 0.79049 1.20080 1.22579 1.16145 1.21796 0.97048 1.01038 0.95182 1.21366 0.91544 0.84490 1.02394 1.87886 1.39364 1.83386 1.20008 1.22462 0.96864 0.96874 0.85206 1.21715 0.98745 1.02635 0.97201 0.86595 0.88113 0.92454 0.91475 0.90325 0.86941 0.85103 0.87177 0.89689 0.90117 0.90742 0.76997 0.95816 0.95304 0.79764 0.93281 0.89636 0.90339 0.90625 0.90120 0.94337 0.92784 0.93410 0.89409 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 13.95 67.78 0.95 -1.10 16 2 C -0.16 -2.26 5.05 -16.49 -0.08 -2.34 16 3 C -0.11 -1.46 9.69 71.24 0.69 -0.77 16 4 C 0.14 2.63 1.78 29.85 0.05 2.69 16 5 H 0.06 1.23 7.25 -2.38 -0.02 1.22 16 6 C -0.13 -2.23 3.59 29.85 0.11 -2.13 16 7 C 0.51 12.22 7.58 87.66 0.66 12.89 16 8 O -0.57 -17.72 14.83 10.77 0.16 -17.56 16 9 N -0.61 -13.40 2.98 -819.81 -2.44 -15.84 16 10 C 0.11 2.08 6.08 86.22 0.52 2.61 16 11 C -0.16 -3.72 4.91 30.53 0.15 -3.57 16 12 C 0.14 3.75 0.71 -10.76 -0.01 3.74 16 13 O -0.56 -15.23 11.71 -148.98 -1.74 -16.98 16 14 C 0.13 4.80 5.40 86.38 0.47 5.26 16 15 N -0.75 -32.35 4.87 -343.43 -1.67 -34.02 16 16 C -0.24 -13.34 10.47 84.03 0.88 -12.45 16 17 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 18 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 19 N -0.99 -62.33 13.97 21.65 0.30 -62.03 16 20 Si 0.96 42.25 27.73 68.60 1.90 44.16 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.24 -8.75 6.52 99.48 0.65 -8.10 16 24 C -0.11 -2.80 5.11 30.66 0.16 -2.64 16 25 C 0.12 2.97 6.19 86.35 0.53 3.51 16 26 O -0.39 -8.91 9.01 -135.19 -1.22 -10.13 16 27 C 0.06 1.23 6.46 71.98 0.46 1.69 16 28 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 29 H 0.12 1.02 8.05 -2.91 -0.02 1.00 16 30 H 0.10 1.10 7.84 -2.91 -0.02 1.08 16 31 H 0.06 0.87 7.50 -2.38 -0.02 0.85 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 1.74 7.20 -2.39 -0.02 1.72 16 35 H 0.13 1.49 7.95 -2.39 -0.02 1.47 16 36 H 0.11 1.42 5.94 -2.39 -0.01 1.40 16 37 H 0.08 1.44 7.81 -2.39 -0.02 1.42 16 38 H 0.08 2.01 6.82 -2.39 -0.02 1.99 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.38 9.65 7.85 -74.06 -0.58 9.06 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.37 14.26 3.44 -92.72 -0.32 13.95 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 1.80 7.81 -2.38 -0.02 1.78 16 48 H 0.08 2.08 7.00 -2.39 -0.02 2.06 16 49 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 50 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 53 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -73.17 415.07 1.97 -71.20 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -0.07 Total: 38.90 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.75 Total: 2.31 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -3.81 Total: -111.89 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.80 Total: -44.67 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.90 Total: 44.16 kcal Total: -73.17 1.97 -71.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281613214.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.860 kcal (2) G-P(sol) polarization free energy of solvation -73.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds