Wall clock time and date at job start Sat Apr 11 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99775 * 2 1 4 4 C 1.50699 * 120.00214 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.46959 * 354.99924 * 4 2 1 6 6 C 1.52997 * 109.47078 * 114.99836 * 4 2 1 7 7 C 1.50705 * 109.47390 * 184.99841 * 6 4 2 8 8 O 1.21282 * 119.99239 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00371 * 180.02562 * 7 6 4 10 10 C 1.46919 * 120.63068 * 359.71828 * 9 7 6 11 11 C 1.53621 * 108.54478 * 126.37131 * 10 9 7 12 12 C 1.53036 * 109.24057 * 54.85688 * 11 10 9 13 13 O 1.42897 * 109.44954 * 58.52562 * 12 11 10 14 14 C 1.53003 * 109.46119 * 178.49617 * 12 11 10 15 15 N 1.46505 * 109.46960 * 305.06473 * 14 12 11 16 16 C 1.36936 * 120.00140 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99984 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00163 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00253 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46976 * 60.00088 * 20 18 16 22 22 H 1.48499 * 109.47406 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47160 * 300.00502 * 20 18 16 24 24 C 1.53044 * 109.53966 * 298.50973 * 12 11 10 25 25 C 1.46929 * 120.63116 * 180.02562 * 9 7 6 26 26 O 1.42898 * 109.46964 * 234.99953 * 4 2 1 27 27 C 1.42899 * 114.00025 * 90.00040 * 26 4 2 28 28 C 1.53006 * 109.47075 * 179.97438 * 27 26 4 29 29 H 1.08002 * 119.99735 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00224 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46762 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47247 * 299.99773 * 3 2 1 33 33 H 1.09000 * 109.47069 * 60.00360 * 3 2 1 34 34 H 1.09001 * 109.47630 * 305.00104 * 6 4 2 35 35 H 1.09004 * 109.47346 * 65.00234 * 6 4 2 36 36 H 1.09003 * 109.59510 * 246.20719 * 10 9 7 37 37 H 1.09002 * 109.58975 * 6.63058 * 10 9 7 38 38 H 1.09003 * 109.63501 * 294.86575 * 11 10 9 39 39 H 1.09004 * 109.43484 * 174.72766 * 11 10 9 40 40 H 0.96706 * 114.00048 * 59.94536 * 13 12 11 41 41 H 1.08996 * 109.47377 * 65.06809 * 14 12 11 42 42 H 1.08997 * 109.47241 * 185.07216 * 14 12 11 43 43 H 0.97005 * 119.99729 * 0.02562 * 15 14 12 44 44 H 0.96999 * 120.00192 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.50094 * 301.42126 * 24 12 11 46 46 H 1.08992 * 109.49700 * 181.31320 * 24 12 11 47 47 H 1.09001 * 109.58245 * 353.36435 * 25 9 7 48 48 H 1.08988 * 109.58809 * 113.79560 * 25 9 7 49 49 H 1.09000 * 109.47064 * 299.99806 * 27 26 4 50 50 H 1.09007 * 109.47276 * 60.00167 * 27 26 4 51 51 H 1.09000 * 109.47373 * 300.00053 * 28 27 26 52 52 H 1.08998 * 109.46522 * 60.00416 * 28 27 26 53 53 H 1.08999 * 109.46850 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0006 5 1 1.3586 -2.1317 0.0886 6 6 2.8465 -1.4413 -1.3080 7 6 3.5010 -2.7977 -1.3626 8 8 3.3552 -3.5786 -0.4462 9 7 4.2484 -3.1429 -2.4297 10 6 4.4292 -2.2100 -3.5502 11 6 5.9344 -2.0380 -3.8047 12 6 6.5693 -3.4131 -4.0236 13 8 5.9377 -4.0579 -5.1314 14 6 8.0619 -3.2450 -4.3147 15 7 8.2388 -2.3316 -5.4464 16 6 9.4979 -2.0275 -5.8905 17 1 10.3606 -2.4612 -5.4067 18 6 9.6656 -1.1616 -6.9625 19 7 8.6142 -0.6326 -7.5518 20 14 11.3831 -0.7473 -7.5687 21 1 12.0687 -1.9914 -8.0018 22 1 11.2903 0.1921 -8.7151 23 1 12.1559 -0.1128 -6.4708 24 6 6.3882 -4.2665 -2.7661 25 6 4.8923 -4.4618 -2.4976 26 8 2.9710 -1.3316 1.1030 27 6 2.4140 -1.8775 2.3004 28 6 3.4684 -1.8569 3.4090 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 3.1352 1.1059 -0.0005 32 1 1.8002 1.8767 -0.8900 33 1 1.8002 1.8767 0.8900 34 1 2.1658 -1.3321 -2.1523 35 1 3.6117 -0.6665 -1.3557 36 1 3.9487 -2.6124 -4.4421 37 1 3.9873 -1.2460 -3.2981 38 1 6.3985 -1.5557 -2.9444 39 1 6.0842 -1.4227 -4.6920 40 1 6.0128 -3.5722 -5.9643 41 1 8.5596 -2.8352 -3.4358 42 1 8.4959 -4.2145 -4.5591 43 1 7.4639 -1.9417 -5.8807 44 1 8.7313 -0.0279 -8.3011 45 1 6.8479 -3.7632 -1.9156 46 1 6.8609 -5.2373 -2.9141 47 1 4.7561 -4.9840 -1.5505 48 1 4.4488 -5.0438 -3.3053 49 1 1.5538 -1.2815 2.6056 50 1 2.0982 -2.9049 2.1189 51 1 4.3283 -2.4530 3.1036 52 1 3.7844 -0.8296 3.5906 53 1 3.0434 -2.2728 4.3224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281613221.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:16 Heat of formation + Delta-G solvation = -128.383830 kcal Electronic energy + Delta-G solvation = -31198.383141 eV Core-core repulsion = 27069.853742 eV Total energy + Delta-G solvation = -4128.529399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50640 -40.10962 -39.05413 -36.73264 -36.09763 -35.77519 -33.57055 -33.05179 -32.23941 -31.73742 -30.82600 -28.30165 -28.15345 -25.93605 -24.81265 -24.43896 -23.65118 -23.06265 -21.40859 -19.96604 -19.80524 -19.43276 -18.12832 -17.82448 -17.25506 -17.00083 -16.73095 -16.58030 -16.27365 -15.84748 -15.67915 -15.54767 -15.00570 -14.99050 -14.81941 -14.73102 -14.42651 -14.22135 -14.11707 -13.94254 -13.60098 -13.37757 -13.20978 -13.14636 -12.99047 -12.83302 -12.76177 -12.69176 -12.56417 -12.45764 -12.29620 -12.21204 -12.10695 -11.98000 -11.93975 -11.76206 -11.30044 -10.96623 -10.88350 -10.67477 -10.45667 -10.07110 -9.60909 -9.02100 -7.96598 -5.24699 1.19694 1.48545 1.49867 1.56080 1.65341 2.02365 2.55138 2.80334 3.25936 3.40161 3.43719 3.66019 3.74659 3.87399 3.91731 3.94624 4.01621 4.10628 4.20821 4.24303 4.32441 4.35173 4.39279 4.46293 4.50614 4.53445 4.61509 4.72123 4.73182 4.77439 4.81085 4.84119 4.85998 4.89378 4.93364 4.99496 5.02704 5.07710 5.08130 5.18127 5.18355 5.24804 5.33480 5.49020 5.55171 5.64765 5.82373 6.25573 6.35161 6.44561 6.75672 7.18645 7.33731 8.03985 8.30559 9.25787 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.002447 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.926419 B =11441.352826 C =12016.941207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.157 4.157 3 C -0.113 4.113 4 C 0.143 3.857 5 H 0.062 0.938 6 C -0.133 4.133 7 C 0.515 3.485 8 O -0.574 6.574 9 N -0.608 5.608 10 C 0.117 3.883 11 C -0.150 4.150 12 C 0.139 3.861 13 O -0.561 6.561 14 C 0.128 3.872 15 N -0.735 5.735 16 C -0.250 4.250 17 H 0.069 0.931 18 C -0.066 4.066 19 N -0.962 5.962 20 Si 0.969 3.031 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.281 1.281 24 C -0.111 4.111 25 C 0.125 3.875 26 O -0.387 6.387 27 C 0.062 3.938 28 C -0.146 4.146 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.382 0.618 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.378 0.622 44 H 0.253 0.747 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.038 0.962 51 H 0.047 0.953 52 H 0.062 0.938 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.076 0.300 16.414 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.169 4.169 4 C 0.084 3.916 5 H 0.080 0.920 6 C -0.172 4.172 7 C 0.305 3.695 8 O -0.454 6.454 9 N -0.341 5.341 10 C -0.005 4.005 11 C -0.189 4.189 12 C 0.098 3.902 13 O -0.368 6.368 14 C 0.001 3.999 15 N -0.380 5.380 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.259 4.259 19 N -0.612 5.612 20 Si 0.798 3.202 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.150 4.150 25 C 0.002 3.998 26 O -0.307 6.307 27 C -0.015 4.015 28 C -0.203 4.203 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.213 0.787 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.066 0.934 52 H 0.081 0.919 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.914 -0.501 17.338 24.935 hybrid contribution 1.006 0.621 -1.199 1.684 sum -16.908 0.121 16.139 23.374 Atomic orbital electron populations 1.23921 0.94720 1.03026 0.99526 1.22229 0.95805 0.96047 1.01698 1.20735 0.99954 0.93755 1.02487 1.20783 0.90521 0.94302 0.85963 0.92033 1.21896 1.01822 0.94396 0.99120 1.20975 0.78333 0.89531 0.80700 1.90642 1.62938 1.54182 1.37638 1.48202 1.49716 1.16725 1.19470 1.21876 0.95432 0.93927 0.89245 1.22491 0.96245 0.97203 1.02937 1.21195 0.89880 0.91936 0.87192 1.86375 1.78397 1.52131 1.19943 1.21442 0.95446 0.92780 0.90252 1.42409 1.05073 1.54217 1.36325 1.19497 0.86294 1.21444 1.10899 0.91319 1.25440 1.00586 1.00525 0.99316 1.69746 1.29465 1.36151 1.25827 0.85294 0.80062 0.77478 0.77389 1.20739 1.21922 1.20685 1.21809 0.96976 1.00986 0.95184 1.21388 0.91634 0.84418 1.02358 1.87886 1.39376 1.83390 1.20016 1.22474 0.96897 0.96888 0.85192 1.21715 0.98732 1.02630 0.97189 0.88064 0.86549 0.92547 0.90410 0.91352 0.85238 0.87132 0.89968 0.87436 0.91323 0.90658 0.76884 0.95843 0.96222 0.78726 0.93822 0.90442 0.89576 0.89958 0.90769 0.92754 0.94318 0.93418 0.91888 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 13.95 67.78 0.95 -1.33 16 2 C -0.16 -2.51 5.05 -16.49 -0.08 -2.59 16 3 C -0.11 -1.65 9.69 71.24 0.69 -0.96 16 4 C 0.14 2.89 1.78 29.85 0.05 2.94 16 5 H 0.06 1.34 7.25 -2.39 -0.02 1.32 16 6 C -0.13 -2.55 3.59 29.85 0.11 -2.45 16 7 C 0.51 13.36 7.58 87.66 0.66 14.02 16 8 O -0.57 -18.64 14.83 10.74 0.16 -18.48 16 9 N -0.61 -15.04 2.97 -818.01 -2.43 -17.47 16 10 C 0.12 2.60 6.13 86.51 0.53 3.13 16 11 C -0.15 -4.23 4.89 30.82 0.15 -4.08 16 12 C 0.14 4.27 0.71 -10.77 -0.01 4.26 16 13 O -0.56 -17.57 11.70 -148.98 -1.74 -19.31 16 14 C 0.13 4.98 5.43 86.38 0.47 5.44 16 15 N -0.74 -34.89 5.07 -343.44 -1.74 -36.63 16 16 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 17 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 18 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 19 N -0.96 -55.59 13.06 21.65 0.28 -55.31 16 20 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.11 -3.01 5.11 30.69 0.16 -2.86 16 25 C 0.12 3.25 6.19 86.37 0.53 3.78 16 26 O -0.39 -9.45 9.01 -135.21 -1.22 -10.67 16 27 C 0.06 1.28 6.46 71.98 0.46 1.75 16 28 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 29 H 0.10 1.23 7.84 -2.91 -0.02 1.20 16 30 H 0.12 1.17 8.05 -2.91 -0.02 1.15 16 31 H 0.06 0.96 7.50 -2.38 -0.02 0.94 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.13 1.81 7.93 -2.39 -0.02 1.79 16 35 H 0.11 2.01 7.22 -2.39 -0.02 2.00 16 36 H 0.08 1.77 7.81 -2.39 -0.02 1.75 16 37 H 0.11 1.83 5.93 -2.39 -0.01 1.81 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.41 6.53 -2.38 -0.02 2.40 16 40 H 0.38 12.02 8.19 -74.05 -0.61 11.41 16 41 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.38 18.21 5.55 -92.70 -0.51 17.69 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.08 2.26 7.01 -2.39 -0.02 2.24 16 48 H 0.07 1.94 7.81 -2.39 -0.02 1.92 16 49 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.04 0.88 8.09 -2.38 -0.02 0.86 16 51 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.70 418.24 1.84 -64.87 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.23 Total: 42.67 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 6.72 Total: 3.36 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.88 Total: -109.41 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -2.80 Total: -48.46 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.70 1.84 -64.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281613221.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.517 kcal (2) G-P(sol) polarization free energy of solvation -66.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds