Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47426 * 2 1 4 4 C 1.42895 * 114.00083 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.57730 * 29.84396 * 4 3 2 6 6 C 1.53088 * 109.52266 * 269.68441 * 4 3 2 7 7 O 1.42902 * 109.41830 * 297.70244 * 6 4 3 8 8 C 1.42901 * 114.10118 * 298.84615 * 7 6 4 9 9 C 1.53092 * 109.41734 * 61.15258 * 8 7 6 10 10 C 1.53176 * 109.52035 * 150.00075 * 4 3 2 11 11 H 1.09002 * 109.61652 * 182.83386 * 10 4 3 12 12 C 1.52998 * 109.54613 * 303.05989 * 10 4 3 13 13 C 1.50698 * 109.47300 * 184.55749 * 12 10 4 14 14 O 1.21281 * 120.00164 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99720 * 179.97438 * 13 12 10 16 16 C 1.46508 * 120.00013 * 180.02562 * 15 13 12 17 17 C 1.52991 * 109.47429 * 180.02562 * 16 15 13 18 18 H 1.08999 * 112.90686 * 316.25260 * 17 16 15 19 19 C 1.53781 * 113.61611 * 87.50116 * 17 16 15 20 20 C 1.54049 * 87.08031 * 139.97702 * 19 17 16 21 21 H 1.09000 * 113.61076 * 89.06984 * 20 19 17 22 22 N 1.46494 * 113.69866 * 220.05561 * 20 19 17 23 23 C 1.36939 * 119.99621 * 252.42359 * 22 20 19 24 24 H 1.07999 * 120.00346 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99701 * 180.02562 * 23 22 20 26 26 N 1.31611 * 120.00114 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99994 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47155 * 89.99518 * 27 25 23 29 29 H 1.48498 * 109.47274 * 209.99561 * 27 25 23 30 30 H 1.48506 * 109.46913 * 329.99906 * 27 25 23 31 31 C 1.53781 * 113.61529 * 184.99923 * 17 16 15 32 32 H 1.09002 * 109.47327 * 299.99728 * 1 2 3 33 33 H 1.09002 * 109.47293 * 59.99947 * 1 2 3 34 34 H 1.09005 * 109.47517 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46684 * 239.99877 * 2 1 3 36 36 H 1.09002 * 109.47293 * 120.00053 * 2 1 3 37 37 H 1.08999 * 109.48009 * 177.72106 * 6 4 3 38 38 H 1.08995 * 109.49190 * 57.69512 * 6 4 3 39 39 H 1.09004 * 109.47863 * 301.17159 * 8 7 6 40 40 H 1.08998 * 109.48327 * 181.13749 * 8 7 6 41 41 H 1.08996 * 109.52382 * 182.49437 * 9 8 7 42 42 H 1.08999 * 109.51995 * 62.29601 * 9 8 7 43 43 H 1.08993 * 109.47246 * 64.55425 * 12 10 4 44 44 H 1.09005 * 109.46616 * 304.55680 * 12 10 4 45 45 H 0.96996 * 120.00851 * 359.97438 * 15 13 12 46 46 H 1.08997 * 109.46666 * 59.99730 * 16 15 13 47 47 H 1.09002 * 109.46731 * 300.00370 * 16 15 13 48 48 H 1.09005 * 113.61471 * 254.53285 * 19 17 16 49 49 H 1.09003 * 113.61469 * 25.43063 * 19 17 16 50 50 H 0.97000 * 120.00537 * 72.42383 * 22 20 19 51 51 H 0.97002 * 120.00116 * 180.02562 * 26 25 23 52 52 H 1.09002 * 113.61445 * 334.56787 * 31 17 16 53 53 H 1.09002 * 113.61408 * 105.38518 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8651 0.6009 -0.5120 6 6 3.9408 1.5081 1.4421 7 8 3.4163 2.6670 2.0930 8 6 3.8069 3.9022 1.4898 9 6 3.2915 3.9504 0.0490 10 6 3.8421 2.7469 -0.7224 11 1 4.9294 2.8095 -0.7679 12 6 3.2698 2.7432 -2.1413 13 6 3.7669 3.9549 -2.8867 14 8 4.5059 4.7441 -2.3370 15 7 3.3903 4.1616 -4.1641 16 6 3.8740 5.3394 -4.8891 17 6 3.3016 5.3357 -6.3078 18 1 3.3427 4.3539 -6.7794 19 6 1.9266 6.0154 -6.4191 20 6 2.4190 6.6161 -7.7495 21 1 2.2193 5.9836 -8.6145 22 7 2.0103 8.0079 -7.9541 23 6 1.0423 8.3088 -8.8749 24 1 0.5806 7.5202 -9.4504 25 6 0.6554 9.6277 -9.0692 26 7 1.2184 10.5888 -8.3682 27 14 -0.6645 10.0384 -10.3257 28 1 -1.9977 10.0039 -9.6724 29 1 -0.4183 11.3952 -10.8768 30 1 -0.6269 9.0425 -11.4266 31 6 3.8456 6.4682 -7.1945 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8932 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 5.0299 1.5533 1.4413 38 1 3.6146 0.6139 1.9731 39 1 4.8942 3.9788 1.4897 40 1 3.3839 4.7326 2.0551 41 1 3.6261 4.8721 -0.4269 42 1 2.2021 3.9145 0.0505 43 1 2.1811 2.7671 -2.0940 44 1 3.5912 1.8402 -2.6603 45 1 2.7996 3.5304 -4.6040 46 1 4.9627 5.3152 -4.9360 47 1 3.5527 6.2426 -4.3703 48 1 1.1008 5.3136 -6.5359 49 1 1.7439 6.7605 -5.6447 50 1 2.4252 8.7163 -7.4375 51 1 0.9478 11.5104 -8.5037 52 1 4.1876 7.3371 -6.6322 53 1 4.5701 6.1323 -7.9364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316618876.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -135.815892 kcal Electronic energy + Delta-G solvation = -29900.891821 eV Core-core repulsion = 25772.040143 eV Total energy + Delta-G solvation = -4128.851678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36872 -40.44807 -39.65945 -38.08830 -36.10143 -35.24678 -34.95515 -32.30953 -32.23136 -31.01970 -30.09347 -28.20108 -26.45130 -25.87204 -24.67858 -24.32931 -23.53442 -22.40679 -21.54487 -20.90153 -20.40208 -19.05129 -18.08476 -17.63877 -17.46648 -17.14255 -16.86304 -16.60491 -16.58656 -16.20555 -16.05760 -15.75825 -15.42186 -15.10086 -15.06336 -14.84033 -14.52973 -14.06572 -13.86021 -13.61643 -13.40172 -13.24024 -13.17949 -13.09392 -13.00595 -12.91425 -12.71493 -12.60506 -12.35113 -12.20654 -12.10777 -12.08162 -11.97075 -11.66978 -11.57592 -11.53044 -11.25954 -11.07421 -10.90915 -10.83397 -10.67352 -10.04092 -9.96383 -8.97907 -7.94835 -5.23255 1.46906 1.48764 1.57125 1.70242 2.25536 2.56530 2.68476 3.05783 3.36882 3.59898 3.70562 3.74169 3.76647 3.81638 3.90560 3.94407 4.16604 4.24660 4.25818 4.28645 4.35219 4.36575 4.42997 4.44381 4.48452 4.54686 4.55913 4.57545 4.59869 4.74687 4.77860 4.83532 4.88964 4.96126 4.98155 4.99595 5.05428 5.06910 5.10503 5.18169 5.22911 5.33474 5.34369 5.39248 5.48759 5.55506 5.74176 6.17907 6.27448 6.45856 6.63078 7.32707 7.33055 8.11363 8.32869 9.28691 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.001792 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.576103 B =15619.996939 C =16069.653939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.388 6.388 4 C 0.063 3.937 5 H 0.097 0.903 6 C 0.034 3.966 7 O -0.395 6.395 8 C 0.062 3.938 9 C -0.147 4.147 10 C -0.067 4.067 11 H 0.087 0.913 12 C -0.122 4.122 13 C 0.506 3.494 14 O -0.582 6.582 15 N -0.717 5.717 16 C 0.139 3.861 17 C -0.094 4.094 18 H 0.123 0.877 19 C -0.154 4.154 20 C 0.143 3.857 21 H 0.082 0.918 22 N -0.730 5.730 23 C -0.242 4.242 24 H 0.080 0.920 25 C -0.082 4.082 26 N -0.972 5.972 27 Si 0.974 3.026 28 H -0.288 1.288 29 H -0.298 1.298 30 H -0.266 1.266 31 C -0.137 4.137 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.415 0.585 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.371 0.629 51 H 0.250 0.750 52 H 0.064 0.936 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -28.532 17.873 34.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.308 6.308 4 C 0.005 3.995 5 H 0.115 0.885 6 C -0.043 4.043 7 O -0.314 6.314 8 C -0.014 4.014 9 C -0.184 4.184 10 C -0.085 4.085 11 H 0.105 0.895 12 C -0.161 4.161 13 C 0.294 3.706 14 O -0.462 6.462 15 N -0.369 5.369 16 C 0.015 3.985 17 C -0.113 4.113 18 H 0.141 0.859 19 C -0.195 4.195 20 C 0.033 3.967 21 H 0.100 0.900 22 N -0.368 5.368 23 C -0.374 4.374 24 H 0.098 0.902 25 C -0.274 4.274 26 N -0.623 5.623 27 Si 0.803 3.197 28 H -0.216 1.216 29 H -0.224 1.224 30 H -0.191 1.191 31 C -0.177 4.177 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.139 0.861 45 H 0.252 0.748 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.203 0.797 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.026 -27.835 18.237 33.819 hybrid contribution -0.577 0.944 -0.777 1.352 sum 5.449 -26.891 17.461 32.522 Atomic orbital electron populations 1.21748 0.93815 1.02986 1.02289 1.22676 0.95729 0.83295 1.00902 1.87994 1.20349 1.27382 1.95027 1.22806 0.82391 0.98256 0.96006 0.88516 1.23257 0.98572 0.89080 0.93373 1.87912 1.74684 1.14452 1.54397 1.22593 0.99006 0.86511 0.93309 1.22175 1.00846 0.99343 0.96084 1.21029 1.00454 0.93953 0.93112 0.89451 1.21623 1.03369 0.96186 0.94961 1.21266 0.79847 0.87797 0.81695 1.90659 1.38541 1.48815 1.68213 1.45978 1.51033 1.26767 1.13116 1.21164 0.98534 0.87694 0.91124 1.22457 0.95820 0.99427 0.93572 0.85925 1.23768 0.96791 0.99186 0.99718 1.22012 0.93984 0.85319 0.95352 0.90027 1.42641 1.44863 1.03559 1.45701 1.19740 1.12283 0.92267 1.13062 0.90225 1.25623 1.03110 0.95937 1.02686 1.69826 1.47262 0.99475 1.45768 0.85128 0.78729 0.76935 0.78906 1.21564 1.22444 1.19092 1.23328 0.97626 0.97894 0.98833 0.93153 0.92446 0.89490 0.91788 0.92858 0.91042 0.87754 0.92656 0.88911 0.91129 0.92239 0.87724 0.86061 0.74827 0.91763 0.94033 0.91392 0.92908 0.79710 0.94132 0.91696 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.51 6.47 71.98 0.47 0.97 16 3 O -0.39 -6.02 8.70 -141.82 -1.23 -7.26 16 4 C 0.06 0.80 2.43 30.68 0.07 0.87 16 5 H 0.10 0.68 7.79 -2.39 -0.02 0.66 16 6 C 0.03 0.46 6.49 72.01 0.47 0.93 16 7 O -0.40 -8.12 10.70 -141.82 -1.52 -9.64 16 8 C 0.06 1.21 6.84 72.01 0.49 1.70 16 9 C -0.15 -3.09 4.97 30.69 0.15 -2.94 16 10 C -0.07 -1.07 1.76 -10.67 -0.02 -1.09 16 11 H 0.09 1.47 7.96 -2.39 -0.02 1.45 16 12 C -0.12 -1.75 4.94 29.85 0.15 -1.60 16 13 C 0.51 10.98 7.57 87.66 0.66 11.64 16 14 O -0.58 -17.50 13.98 -3.03 -0.04 -17.54 16 15 N -0.72 -13.80 5.56 -463.06 -2.57 -16.37 16 16 C 0.14 3.38 5.51 86.37 0.48 3.86 16 17 C -0.09 -2.22 3.76 -10.27 -0.04 -2.26 16 18 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 19 C -0.15 -4.85 7.44 31.21 0.23 -4.61 16 20 C 0.14 5.35 4.49 45.61 0.20 5.55 16 21 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 22 N -0.73 -36.90 5.41 -320.01 -1.73 -38.63 16 23 C -0.24 -13.39 9.97 84.03 0.84 -12.55 16 24 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 25 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 26 N -0.97 -60.50 13.06 21.65 0.28 -60.21 16 27 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 29 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 30 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 31 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.06 0.43 8.09 -2.39 -0.02 0.41 16 36 H 0.05 0.45 7.86 -2.39 -0.02 0.43 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 1.12 7.86 -2.39 -0.02 1.10 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 1.82 6.03 -2.39 -0.01 1.81 16 42 H 0.06 1.40 7.83 -2.39 -0.02 1.38 16 43 H 0.10 1.52 7.76 -2.39 -0.02 1.50 16 44 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.42 5.43 8.47 -92.71 -0.79 4.65 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.04 1.26 7.84 -2.39 -0.02 1.24 16 48 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 50 H 0.37 20.47 7.92 -92.71 -0.73 19.73 16 51 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 52 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 53 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.80 419.27 0.18 -73.62 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.63 Total: 36.26 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 5.59 Total: -8.54 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.02 Total: -115.21 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -2.79 Total: -34.44 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -73.80 0.18 -73.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316618876.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.194 kcal (2) G-P(sol) polarization free energy of solvation -73.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds